Wall clock time and date at job start Wed Apr 1 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38602 * 120.32423 * 2 1 4 4 N 1.31502 * 120.90022 * 179.76185 * 3 2 1 5 5 C 1.32738 * 121.64199 * 0.53295 * 4 3 2 6 6 C 1.48169 * 119.72435 * 179.74809 * 5 4 3 7 7 O 1.21514 * 120.00440 * 179.72134 * 6 5 4 8 8 N 1.34777 * 119.99804 * 359.72405 * 6 5 4 9 9 C 1.46501 * 120.00323 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.70396 * 35.59574 * 9 8 6 11 11 C 1.53292 * 109.71224 * 275.00354 * 9 8 6 12 12 C 1.52626 * 108.49810 * 176.48056 * 11 9 8 13 13 C 1.52986 * 110.92287 * 62.22148 * 12 11 9 14 14 H 1.08997 * 112.43167 * 73.36206 * 13 12 11 15 15 C 1.55840 * 106.37516 * 198.08458 * 13 12 11 16 16 N 1.47616 * 104.47445 * 77.06791 * 15 13 12 17 17 C 1.36932 * 125.72785 * 204.86363 * 16 15 13 18 18 H 1.08001 * 120.00120 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99961 * 359.97438 * 17 16 15 20 20 N 1.31611 * 119.99819 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47156 * 60.00224 * 21 19 17 23 23 H 1.48499 * 109.46987 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47623 * 299.99966 * 21 19 17 25 25 C 1.47435 * 108.54828 * 24.86177 * 16 15 13 26 26 C 1.53377 * 106.51090 * 359.33352 * 25 16 15 27 27 H 1.08997 * 108.14475 * 91.62014 * 26 25 16 28 28 C 1.50892 * 113.08127 * 212.46257 * 26 25 16 29 29 C 1.39273 * 120.55599 * 359.46347 * 5 4 3 30 30 C 1.38589 * 120.32547 * 180.02562 * 2 1 3 31 31 C 1.50695 * 120.75539 * 359.97438 * 30 2 1 32 32 H 1.09007 * 109.47047 * 269.97566 * 1 2 3 33 33 H 1.08994 * 109.47160 * 29.97621 * 1 2 3 34 34 H 1.08997 * 109.47002 * 149.98203 * 1 2 3 35 35 H 1.08000 * 119.54935 * 0.02562 * 3 2 1 36 36 H 0.97009 * 119.99772 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.63845 * 56.77866 * 11 9 8 38 38 H 1.09002 * 109.79530 * 296.27854 * 11 9 8 39 39 H 1.08998 * 109.19064 * 301.84882 * 12 11 9 40 40 H 1.08997 * 109.15343 * 182.56499 * 12 11 9 41 41 H 1.09003 * 110.43716 * 195.81900 * 15 13 12 42 42 H 1.09000 * 110.43225 * 318.32206 * 15 13 12 43 43 H 0.97009 * 119.99596 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.04887 * 240.06914 * 25 16 15 45 45 H 1.08997 * 110.08826 * 118.61421 * 25 16 15 46 46 H 1.08998 * 109.06079 * 305.33680 * 28 26 25 47 47 H 1.08996 * 109.00101 * 186.36946 * 28 26 25 48 48 H 1.08005 * 120.47216 * 180.27457 * 29 5 4 49 49 H 1.09002 * 109.47322 * 269.98162 * 31 30 2 50 50 H 1.09004 * 109.47029 * 29.97633 * 31 30 2 51 51 H 1.09003 * 109.47352 * 149.97804 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0047 5 6 4.2294 0.0866 -0.0009 6 6 5.7097 0.1511 -0.0009 7 8 6.3626 -0.8737 -0.0010 8 7 6.3321 1.3466 -0.0009 9 6 7.7957 1.4105 -0.0004 10 1 8.1995 0.5928 -0.5974 11 6 8.3172 1.3076 1.4375 12 6 9.8429 1.2883 1.3990 13 6 10.3908 2.5872 0.8047 14 1 10.2978 3.4298 1.4898 15 6 11.8615 2.2912 0.3828 16 7 11.7382 1.5287 -0.8751 17 6 12.6656 0.6532 -1.3737 18 1 12.4792 0.1426 -2.3070 19 6 13.8452 0.4219 -0.6795 20 7 14.0725 1.0444 0.4575 21 14 15.1099 -0.7730 -1.3593 22 1 15.5645 -0.3065 -2.6938 23 1 16.2713 -0.8425 -0.4365 24 1 14.4991 -2.1205 -1.4877 25 6 10.4489 1.8680 -1.5047 26 6 9.7584 2.8701 -0.5713 27 1 10.0353 3.8756 -0.8882 28 6 8.2544 2.7479 -0.5807 29 6 3.5923 -1.1518 -0.0008 30 6 2.2067 -1.1963 -0.0005 31 6 1.4780 -2.5153 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5134 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6647 2.1305 0.0004 36 1 5.8109 2.1648 -0.0012 37 1 7.9509 0.3887 1.8951 38 1 7.9763 2.1661 2.0162 39 1 10.1754 0.4476 0.7902 40 1 10.2247 1.1693 2.4129 41 1 12.4032 3.2216 0.2123 42 1 12.3623 1.6921 1.1434 43 1 14.8967 0.8825 0.9428 44 1 9.8370 0.9720 -1.6095 45 1 10.6171 2.3217 -2.4814 46 1 7.8969 2.8320 -1.6069 47 1 7.8289 3.5577 0.0119 48 1 4.1695 -2.0647 -0.0010 49 1 1.3030 -2.8338 1.0271 50 1 0.5229 -2.4027 -0.5136 51 1 2.0809 -3.2635 -0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980171422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:35 Heat of formation + Delta-G solvation = 9.911644 kcal Electronic energy + Delta-G solvation = -30050.682198 eV Core-core repulsion = 26142.721271 eV Total energy + Delta-G solvation = -3907.960927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.00284 -39.80380 -38.58425 -35.49116 -35.01940 -33.22861 -32.76979 -31.57035 -30.69936 -29.12585 -28.67397 -27.53558 -25.90353 -24.85629 -23.22565 -23.13553 -22.11454 -21.27320 -20.27987 -19.80750 -18.46503 -17.56407 -17.28545 -16.69317 -15.96286 -15.52439 -15.43665 -15.22737 -14.71256 -14.70378 -14.31702 -13.86390 -13.76901 -13.64008 -13.52501 -13.36114 -13.33525 -13.13081 -12.88565 -12.41515 -12.38015 -12.13773 -11.98770 -11.91167 -11.66694 -11.43671 -11.03126 -10.97082 -10.82668 -10.55554 -10.44448 -10.32990 -9.98270 -9.83900 -9.79631 -9.73252 -9.60898 -9.35962 -9.32764 -9.26957 -8.79422 -8.56069 -6.72994 -5.56823 -2.97655 0.36867 0.85984 2.62483 3.08094 3.46470 3.50366 3.51680 3.62453 3.91399 4.23408 4.37860 4.43825 4.47729 4.56604 4.90816 4.97250 4.99713 5.04062 5.06706 5.12864 5.20533 5.33103 5.40888 5.48174 5.51389 5.53947 5.57336 5.66034 5.66383 5.71174 5.78609 5.90465 5.95276 5.97136 6.08140 6.19366 6.27470 6.28003 6.39306 6.50535 6.54166 6.64404 6.72680 6.79445 6.94337 7.07163 7.22792 7.35222 7.57664 7.66358 7.70665 7.95226 8.23017 8.45320 9.30764 9.91544 10.57722 11.46771 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002217 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.328664 B =12625.544820 C =13359.094928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C 0.101 3.899 4 N -0.460 5.460 5 C 0.079 3.921 6 C 0.567 3.433 7 O -0.529 6.529 8 N -0.703 5.703 9 C 0.143 3.857 10 H 0.096 0.904 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.114 4.114 14 H 0.072 0.928 15 C 0.156 3.844 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.075 0.925 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.138 3.862 26 C -0.090 4.090 27 H 0.066 0.934 28 C -0.106 4.106 29 C -0.109 4.109 30 C -0.052 4.052 31 C -0.119 4.119 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.406 0.594 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.007 0.993 42 H 0.109 0.891 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.149 0.851 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.399 0.839 1.495 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.059 4.059 4 N -0.171 5.171 5 C -0.058 4.058 6 C 0.351 3.649 7 O -0.404 6.404 8 N -0.353 5.353 9 C 0.039 3.961 10 H 0.114 0.886 11 C -0.161 4.161 12 C -0.139 4.139 13 C -0.134 4.134 14 H 0.090 0.910 15 C 0.031 3.969 16 N -0.327 5.327 17 C -0.347 4.347 18 H 0.093 0.907 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.013 3.987 26 C -0.110 4.110 27 H 0.085 0.915 28 C -0.144 4.144 29 C -0.130 4.130 30 C -0.060 4.060 31 C -0.176 4.176 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.127 0.873 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.166 0.834 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.178 0.799 1.531 28.231 hybrid contribution -0.021 -0.807 -0.417 0.908 sum -28.200 -0.008 1.114 28.222 Atomic orbital electron populations 1.20822 0.89945 1.03487 1.02904 1.21018 0.97766 0.93658 1.00046 1.22672 0.89324 0.97594 0.96356 1.67540 1.08633 1.30316 1.10594 1.21214 0.94415 0.89580 1.00634 1.17857 0.85602 0.84263 0.77133 1.90824 1.65726 1.34108 1.49786 1.45973 1.07983 1.08209 1.73156 1.21173 0.77498 0.99568 0.97834 0.88610 1.21894 0.97520 1.01238 0.95491 1.21362 0.92318 0.99180 1.01045 1.22593 0.99838 0.96444 0.94476 0.91018 1.22237 0.89379 0.94899 0.90348 1.44580 1.16367 1.49269 1.22532 1.19035 0.95937 1.15705 1.03994 0.90669 1.24756 0.98123 1.00425 0.97478 1.69774 1.25809 1.45609 1.16000 0.86174 0.80910 0.80818 0.77744 1.21345 1.21652 1.21210 1.21249 0.88296 0.94984 0.94218 1.21236 0.92322 0.99922 0.97490 0.91528 1.21166 0.96686 0.95858 1.00714 1.22045 0.94149 0.99283 0.97478 1.20212 0.93258 0.95889 0.96655 1.20894 1.00440 0.93033 1.03190 0.90499 0.90901 0.90772 0.82155 0.75826 0.92258 0.92443 0.90333 0.92506 0.97462 0.87294 0.93802 0.95778 0.96300 0.91867 0.91802 0.83373 0.90228 0.90531 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 9.65 36.00 0.35 -0.10 16 2 C -0.12 -0.89 5.91 -104.36 -0.62 -1.50 16 3 C 0.10 0.83 10.86 -17.56 -0.19 0.64 16 4 N -0.46 -5.08 9.54 -9.80 -0.09 -5.17 16 5 C 0.08 1.00 6.75 -83.01 -0.56 0.44 16 6 C 0.57 8.56 7.78 -12.18 -0.09 8.47 16 7 O -0.53 -9.75 16.00 5.35 0.09 -9.66 16 8 N -0.70 -9.61 5.09 -54.58 -0.28 -9.89 16 9 C 0.14 2.21 2.31 -67.86 -0.16 2.05 16 10 H 0.10 1.79 6.22 -51.93 -0.32 1.46 16 11 C -0.12 -1.96 5.52 -26.77 -0.15 -2.11 16 12 C -0.10 -1.90 4.81 -26.93 -0.13 -2.02 16 13 C -0.11 -2.17 3.72 -88.56 -0.33 -2.50 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 3.83 5.17 -1.91 -0.01 3.82 16 16 N -0.60 -15.66 2.93 -169.58 -0.50 -16.16 16 17 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.14 2.98 6.25 -3.34 -0.02 2.96 16 26 C -0.09 -1.59 2.69 -90.93 -0.24 -1.83 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 C -0.11 -1.51 4.83 -27.87 -0.13 -1.64 16 29 C -0.11 -1.19 9.34 -39.05 -0.36 -1.55 16 30 C -0.05 -0.43 5.91 -104.35 -0.62 -1.05 16 31 C -0.12 -0.63 9.67 36.00 0.35 -0.28 16 32 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 33 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.07 0.23 6.06 -51.93 -0.31 -0.08 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.41 4.73 7.93 -40.82 -0.32 4.40 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.76 7.17 -51.93 -0.37 1.39 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.11 3.00 5.69 -51.93 -0.30 2.70 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.53 6.50 -51.93 -0.34 0.19 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.15 1.62 7.64 -52.48 -0.40 1.22 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.28 6.07 -51.93 -0.32 -0.03 16 51 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -33.15 394.70 -10.61 -43.76 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.14 Total: 3.33 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.17 Total: -3.06 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.31 Total: -57.98 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.15 -10.61 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980171422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.673 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds