Wall clock time and date at job start Wed Apr 1 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38602 * 120.32423 * 2 1 4 4 N 1.31502 * 120.90022 * 179.76185 * 3 2 1 5 5 C 1.32738 * 121.64199 * 0.53295 * 4 3 2 6 6 C 1.48169 * 119.72435 * 179.74809 * 5 4 3 7 7 O 1.21514 * 120.00440 * 179.72134 * 6 5 4 8 8 N 1.34777 * 119.99804 * 359.72405 * 6 5 4 9 9 C 1.46501 * 120.00323 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.70396 * 35.59574 * 9 8 6 11 11 C 1.53292 * 109.71224 * 275.00354 * 9 8 6 12 12 C 1.52626 * 108.49810 * 176.48056 * 11 9 8 13 13 C 1.52986 * 110.92287 * 62.22148 * 12 11 9 14 14 H 1.08997 * 112.43167 * 73.36206 * 13 12 11 15 15 C 1.55840 * 106.37516 * 198.08458 * 13 12 11 16 16 N 1.47616 * 104.47445 * 77.06791 * 15 13 12 17 17 C 1.36932 * 125.72785 * 204.86363 * 16 15 13 18 18 H 1.08001 * 120.00120 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99961 * 359.97438 * 17 16 15 20 20 N 1.31611 * 119.99819 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47156 * 60.00224 * 21 19 17 23 23 H 1.48499 * 109.46987 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47623 * 299.99966 * 21 19 17 25 25 C 1.47435 * 108.54828 * 24.86177 * 16 15 13 26 26 C 1.53377 * 106.51090 * 359.33352 * 25 16 15 27 27 H 1.08997 * 108.14475 * 91.62014 * 26 25 16 28 28 C 1.50892 * 113.08127 * 212.46257 * 26 25 16 29 29 C 1.39273 * 120.55599 * 359.46347 * 5 4 3 30 30 C 1.38589 * 120.32547 * 180.02562 * 2 1 3 31 31 C 1.50695 * 120.75539 * 359.97438 * 30 2 1 32 32 H 1.09007 * 109.47047 * 269.97566 * 1 2 3 33 33 H 1.08994 * 109.47160 * 29.97621 * 1 2 3 34 34 H 1.08997 * 109.47002 * 149.98203 * 1 2 3 35 35 H 1.08000 * 119.54935 * 0.02562 * 3 2 1 36 36 H 0.97009 * 119.99772 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.63845 * 56.77866 * 11 9 8 38 38 H 1.09002 * 109.79530 * 296.27854 * 11 9 8 39 39 H 1.08998 * 109.19064 * 301.84882 * 12 11 9 40 40 H 1.08997 * 109.15343 * 182.56499 * 12 11 9 41 41 H 1.09003 * 110.43716 * 195.81900 * 15 13 12 42 42 H 1.09000 * 110.43225 * 318.32206 * 15 13 12 43 43 H 0.97009 * 119.99596 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.04887 * 240.06914 * 25 16 15 45 45 H 1.08997 * 110.08826 * 118.61421 * 25 16 15 46 46 H 1.08998 * 109.06079 * 305.33680 * 28 26 25 47 47 H 1.08996 * 109.00101 * 186.36946 * 28 26 25 48 48 H 1.08005 * 120.47216 * 180.27457 * 29 5 4 49 49 H 1.09002 * 109.47322 * 269.98162 * 31 30 2 50 50 H 1.09004 * 109.47029 * 29.97633 * 31 30 2 51 51 H 1.09003 * 109.47352 * 149.97804 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0047 5 6 4.2294 0.0866 -0.0009 6 6 5.7097 0.1511 -0.0009 7 8 6.3626 -0.8737 -0.0010 8 7 6.3321 1.3466 -0.0009 9 6 7.7957 1.4105 -0.0004 10 1 8.1995 0.5928 -0.5974 11 6 8.3172 1.3076 1.4375 12 6 9.8429 1.2883 1.3990 13 6 10.3908 2.5872 0.8047 14 1 10.2978 3.4298 1.4898 15 6 11.8615 2.2912 0.3828 16 7 11.7382 1.5287 -0.8751 17 6 12.6656 0.6532 -1.3737 18 1 12.4792 0.1426 -2.3070 19 6 13.8452 0.4219 -0.6795 20 7 14.0725 1.0444 0.4575 21 14 15.1099 -0.7730 -1.3593 22 1 15.5645 -0.3065 -2.6938 23 1 16.2713 -0.8425 -0.4365 24 1 14.4991 -2.1205 -1.4877 25 6 10.4489 1.8680 -1.5047 26 6 9.7584 2.8701 -0.5713 27 1 10.0353 3.8756 -0.8882 28 6 8.2544 2.7479 -0.5807 29 6 3.5923 -1.1518 -0.0008 30 6 2.2067 -1.1963 -0.0005 31 6 1.4780 -2.5153 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5134 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6647 2.1305 0.0004 36 1 5.8109 2.1648 -0.0012 37 1 7.9509 0.3887 1.8951 38 1 7.9763 2.1661 2.0162 39 1 10.1754 0.4476 0.7902 40 1 10.2247 1.1693 2.4129 41 1 12.4032 3.2216 0.2123 42 1 12.3623 1.6921 1.1434 43 1 14.8967 0.8825 0.9428 44 1 9.8370 0.9720 -1.6095 45 1 10.6171 2.3217 -2.4814 46 1 7.8969 2.8320 -1.6069 47 1 7.8289 3.5577 0.0119 48 1 4.1695 -2.0647 -0.0010 49 1 1.3030 -2.8338 1.0271 50 1 0.5229 -2.4027 -0.5136 51 1 2.0809 -3.2635 -0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980171422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:34 Heat of formation + Delta-G solvation = -10.613894 kcal Electronic energy + Delta-G solvation = -30051.572252 eV Core-core repulsion = 26142.721271 eV Total energy + Delta-G solvation = -3908.850981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.87282 -41.07145 -39.89240 -37.02402 -35.71040 -34.88462 -33.46814 -33.24625 -32.21512 -30.70307 -29.39962 -28.27332 -27.50835 -26.64978 -24.25382 -23.77716 -23.64861 -22.58376 -21.67007 -21.31456 -19.76930 -19.01238 -18.44760 -18.12562 -17.09092 -16.79798 -16.50888 -16.29322 -16.09851 -15.72149 -15.53147 -15.38912 -15.22581 -14.88206 -14.79502 -14.04760 -13.95054 -13.80790 -13.74285 -13.70580 -13.64403 -13.48167 -13.30865 -13.06583 -12.92681 -12.70803 -12.65862 -12.52211 -12.46857 -12.22880 -12.15111 -11.80906 -11.74703 -11.50936 -11.20096 -11.02298 -10.89165 -10.71135 -10.54007 -10.50944 -10.15770 -9.85444 -8.84508 -7.76212 -5.19455 -0.40839 0.19138 1.43020 1.46753 1.52813 1.65475 2.00254 2.48956 2.79563 3.10707 3.32009 3.63898 3.68150 3.69931 3.74373 3.76586 3.87039 3.90474 4.04626 4.16276 4.23117 4.25083 4.31731 4.51201 4.54202 4.56045 4.64017 4.65092 4.69030 4.72069 4.75250 4.78759 4.89516 4.92734 4.99973 5.04949 5.10535 5.12312 5.16227 5.22569 5.22957 5.34997 5.37659 5.43916 5.45220 5.50931 5.56076 5.69041 5.73890 5.87519 6.34587 6.39550 6.79013 7.12632 7.14328 7.80120 8.44921 9.24788 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002217 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.328664 B =12625.544820 C =13359.094928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C 0.095 3.905 4 N -0.470 5.470 5 C 0.052 3.948 6 C 0.563 3.437 7 O -0.576 6.576 8 N -0.690 5.690 9 C 0.148 3.852 10 H 0.056 0.944 11 C -0.110 4.110 12 C -0.093 4.093 13 C -0.097 4.097 14 H 0.106 0.894 15 C 0.157 3.843 16 N -0.622 5.622 17 C -0.238 4.238 18 H 0.073 0.927 19 C -0.067 4.067 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.133 3.867 26 C -0.077 4.077 27 H 0.082 0.918 28 C -0.095 4.095 29 C -0.124 4.124 30 C -0.057 4.057 31 C -0.118 4.118 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.195 0.805 36 H 0.420 0.580 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.055 0.945 41 H -0.015 1.015 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.015 0.985 45 H 0.020 0.980 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.465 2.476 1.469 33.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.065 4.065 4 N -0.182 5.182 5 C -0.085 4.085 6 C 0.349 3.651 7 O -0.455 6.455 8 N -0.340 5.340 9 C 0.044 3.956 10 H 0.074 0.926 11 C -0.149 4.149 12 C -0.131 4.131 13 C -0.116 4.116 14 H 0.124 0.876 15 C 0.032 3.968 16 N -0.348 5.348 17 C -0.367 4.367 18 H 0.091 0.909 19 C -0.260 4.260 20 N -0.596 5.596 21 Si 0.806 3.194 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.008 3.992 26 C -0.096 4.096 27 H 0.101 0.899 28 C -0.133 4.133 29 C -0.145 4.145 30 C -0.065 4.065 31 C -0.174 4.174 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.212 0.788 36 H 0.258 0.742 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.003 0.997 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.152 0.848 49 H 0.108 0.892 50 H 0.117 0.883 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -32.283 2.469 1.489 32.411 hybrid contribution 1.124 -1.351 -0.427 1.809 sum -31.159 1.118 1.062 31.197 Atomic orbital electron populations 1.20947 0.86990 1.04974 1.04135 1.21459 0.99741 0.92710 0.97256 1.23322 0.88493 0.99482 0.95245 1.67481 1.10040 1.29506 1.11183 1.20826 0.92909 0.90827 1.03900 1.18344 0.86939 0.83802 0.75993 1.90791 1.67099 1.35639 1.52016 1.45764 1.07085 1.08549 1.72575 1.20916 0.78592 0.99220 0.96876 0.92612 1.21767 0.94975 1.01876 0.96273 1.21208 0.94537 0.97468 0.99909 1.22510 0.95683 0.97423 0.95992 0.87606 1.22047 0.92761 0.92885 0.89124 1.44850 1.17378 1.49055 1.23535 1.19371 0.96893 1.16350 1.04116 0.90893 1.25583 1.00083 1.02328 0.97985 1.70034 1.25874 1.46752 1.16928 0.85168 0.78292 0.78706 0.77275 1.20393 1.21616 1.20793 1.21436 0.86780 0.95849 0.95179 1.21181 0.94270 0.99154 0.95013 0.89919 1.21101 0.93921 0.95900 1.02419 1.22091 0.95640 0.98344 0.98418 1.20557 0.92173 0.97876 0.95878 1.20979 1.00980 0.91368 1.04114 0.89114 0.89195 0.89598 0.78840 0.74194 0.93769 0.89247 0.95010 0.92624 0.99745 0.90795 0.94379 0.96720 0.96205 0.90330 0.87900 0.84776 0.89194 0.88283 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.38 9.65 71.24 0.69 0.31 16 2 C -0.11 -1.24 5.91 -19.69 -0.12 -1.36 16 3 C 0.10 1.28 10.86 84.83 0.92 2.21 16 4 N -0.47 -9.62 9.54 -184.91 -1.76 -11.38 16 5 C 0.05 1.30 6.75 41.90 0.28 1.58 16 6 C 0.56 17.53 7.78 86.88 0.68 18.21 16 7 O -0.58 -22.77 16.00 -3.76 -0.06 -22.83 16 8 N -0.69 -18.35 5.09 -444.89 -2.27 -20.62 16 9 C 0.15 4.53 2.31 45.03 0.10 4.64 16 10 H 0.06 2.19 6.22 -2.39 -0.01 2.17 16 11 C -0.11 -3.47 5.52 30.57 0.17 -3.30 16 12 C -0.09 -3.57 4.81 30.47 0.15 -3.42 16 13 C -0.10 -3.62 3.72 -9.46 -0.04 -3.65 16 14 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.16 7.97 5.17 87.15 0.45 8.42 16 16 N -0.62 -33.79 2.93 -690.42 -2.02 -35.81 16 17 C -0.24 -14.18 10.28 84.03 0.86 -13.31 16 18 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 20 N -0.95 -58.40 10.09 21.65 0.22 -58.18 16 21 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 25 C 0.13 5.83 6.25 86.33 0.54 6.37 16 26 C -0.08 -2.59 2.69 -10.99 -0.03 -2.62 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 C -0.10 -2.45 4.83 29.85 0.14 -2.31 16 29 C -0.12 -2.76 9.34 22.61 0.21 -2.55 16 30 C -0.06 -0.85 5.91 -19.69 -0.12 -0.97 16 31 C -0.12 -1.00 9.67 71.23 0.69 -0.31 16 32 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 33 H 0.09 0.06 8.09 -2.39 -0.02 0.04 16 34 H 0.09 0.13 6.06 -2.39 -0.01 0.12 16 35 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.42 8.84 7.93 -92.70 -0.74 8.11 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.50 7.17 -2.39 -0.02 1.49 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H -0.02 -0.84 8.14 -2.39 -0.02 -0.85 16 42 H 0.07 4.30 5.69 -2.39 -0.01 4.28 16 43 H 0.25 14.78 8.31 -92.70 -0.77 14.00 16 44 H 0.01 0.68 6.50 -2.39 -0.02 0.66 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.13 3.23 7.64 -2.91 -0.02 3.21 16 49 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.10 0.39 6.07 -2.39 -0.01 0.37 16 51 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 Total: -1.00 -78.76 394.70 2.39 -76.37 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.20 Total: 17.91 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.05 Total: 4.40 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.83 Total: -125.99 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -78.76 2.39 -76.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980171422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.754 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds