Wall clock time and date at job start Wed Apr 1 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38223 * 119.61702 * 2 1 4 4 C 1.38630 * 119.15675 * 179.75012 * 3 2 1 5 5 C 1.38675 * 118.42095 * 0.50784 * 4 3 2 6 6 C 1.50703 * 120.41670 * 179.78330 * 5 4 3 7 7 C 1.50702 * 109.47244 * 269.72345 * 6 5 4 8 8 O 1.21277 * 119.99809 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99714 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.02114 * 33.93493 * 10 9 7 12 12 C 1.52523 * 109.03421 * 275.00145 * 10 9 7 13 13 C 1.53849 * 111.65610 * 293.47918 * 12 10 9 14 14 C 1.51445 * 107.03891 * 302.79907 * 13 12 10 15 15 H 1.09006 * 109.86857 * 305.81832 * 14 13 12 16 16 C 1.52323 * 117.45681 * 178.78261 * 14 13 12 17 17 N 1.48243 * 105.86579 * 214.67368 * 16 14 13 18 18 C 1.36936 * 125.78594 * 183.44882 * 17 16 14 19 19 H 1.07998 * 119.99762 * 172.81841 * 18 17 16 20 20 C 1.38810 * 120.00024 * 352.81902 * 18 17 16 21 21 N 1.31622 * 119.99961 * 6.09142 * 20 18 17 22 22 Si 1.86796 * 120.00244 * 186.09397 * 20 18 17 23 23 H 1.48498 * 109.47046 * 94.98498 * 22 20 18 24 24 H 1.48503 * 109.47027 * 214.98911 * 22 20 18 25 25 H 1.48506 * 109.46889 * 334.98738 * 22 20 18 26 26 C 1.48660 * 108.42890 * 3.18084 * 17 16 14 27 27 C 1.53067 * 103.44714 * 24.38460 * 26 17 16 28 28 H 1.08996 * 110.55785 * 75.65569 * 27 26 17 29 29 C 1.51613 * 116.67281 * 204.11682 * 27 26 17 30 30 C 1.38174 * 119.16415 * 359.51543 * 5 4 3 31 31 N 1.31852 * 119.61665 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47206 * 269.98361 * 1 2 3 33 33 H 1.09005 * 109.46722 * 29.98133 * 1 2 3 34 34 H 1.08996 * 109.47197 * 149.97500 * 1 2 3 35 35 H 1.08003 * 120.42196 * 0.03862 * 3 2 1 36 36 H 1.08003 * 120.78715 * 180.27304 * 4 3 2 37 37 H 1.08998 * 109.46790 * 149.72366 * 6 5 4 38 38 H 1.09003 * 109.46870 * 29.72607 * 6 5 4 39 39 H 0.96992 * 120.00257 * 0.02562 * 9 7 6 40 40 H 1.08993 * 109.04717 * 172.91607 * 12 10 9 41 41 H 1.09000 * 108.98510 * 53.99479 * 12 10 9 42 42 H 1.08997 * 109.93763 * 183.41920 * 13 12 10 43 43 H 1.08999 * 110.01487 * 62.21639 * 13 12 10 44 44 H 1.09001 * 110.17250 * 95.57344 * 16 14 13 45 45 H 1.09003 * 110.17105 * 333.76866 * 16 14 13 46 46 H 0.97001 * 120.00224 * 179.97438 * 21 20 18 47 47 H 1.09011 * 110.62308 * 142.86877 * 26 17 16 48 48 H 1.08996 * 110.63491 * 265.73161 * 26 17 16 49 49 H 1.09005 * 109.94411 * 295.61476 * 29 27 26 50 50 H 1.08999 * 109.94945 * 56.86466 * 29 27 26 51 51 H 1.07994 * 119.61830 * 180.24816 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1905 0.0053 5 6 4.2266 -0.0343 -0.0004 6 6 5.7323 -0.0989 0.0000 7 6 6.2346 -0.1202 -1.4206 8 8 5.4475 -0.0859 -2.3427 9 7 7.5586 -0.1775 -1.6664 10 6 8.0469 -0.1977 -3.0475 11 1 7.3851 0.4073 -3.6672 12 6 8.0321 -1.6344 -3.5594 13 6 9.0493 -2.5139 -2.8120 14 6 10.4074 -1.8663 -2.9848 15 1 10.6135 -1.7149 -4.0444 16 6 11.5960 -2.5357 -2.3071 17 7 12.4938 -1.4348 -1.8833 18 6 13.7191 -1.5840 -1.2904 19 1 14.3473 -0.7213 -1.1245 20 6 14.1537 -2.8440 -0.9027 21 7 13.4442 -3.9088 -1.2114 22 14 15.7455 -3.0285 0.0573 23 1 15.4445 -3.0738 1.5108 24 1 16.4245 -4.2858 -0.3471 25 1 16.6328 -1.8726 -0.2287 26 6 11.8413 -0.1414 -2.2170 27 6 10.3521 -0.4933 -2.2544 28 1 9.9609 -0.6102 -1.2438 29 6 9.4610 0.4062 -3.0884 30 6 3.4766 -1.1948 -0.0009 31 7 2.1586 -1.1463 -0.0005 32 1 -0.3633 -0.0003 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6508 2.1373 0.0006 36 1 4.1366 2.1139 0.0098 37 1 6.0569 -1.0037 0.5139 38 1 6.1332 0.7747 0.5142 39 1 8.1880 -0.2053 -0.9290 40 1 8.2739 -1.6358 -4.6222 41 1 7.0338 -2.0497 -3.4214 42 1 9.0586 -3.5165 -3.2394 43 1 8.7932 -2.5635 -1.7537 44 1 12.1103 -3.1903 -3.0108 45 1 11.2626 -3.1041 -1.4388 46 1 13.7481 -4.7893 -0.9408 47 1 12.0413 0.6003 -1.4436 48 1 12.1777 0.2190 -3.1891 49 1 9.4482 1.4113 -2.6667 50 1 9.8221 0.4377 -4.1163 51 1 3.9754 -2.1527 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980235805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:10 Heat of formation + Delta-G solvation = 11.190668 kcal Electronic energy + Delta-G solvation = -29915.540257 eV Core-core repulsion = 26007.634792 eV Total energy + Delta-G solvation = -3907.905465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.78623 -40.12622 -38.69038 -35.70343 -34.25248 -33.25736 -32.50083 -31.87820 -30.94147 -29.97318 -28.80346 -26.58566 -25.99148 -25.01387 -23.77234 -22.23076 -21.99289 -20.88134 -20.62913 -19.78387 -18.96018 -17.28741 -16.95336 -16.74083 -16.51570 -16.00155 -15.35517 -15.06305 -14.88184 -14.70885 -14.36512 -14.18936 -13.86186 -13.61534 -13.49783 -13.26566 -13.19985 -12.80200 -12.62341 -12.58842 -12.42023 -12.20232 -12.15269 -11.95794 -11.75454 -11.46926 -11.20099 -11.02877 -10.85402 -10.79446 -10.67165 -10.10574 -10.03146 -9.90867 -9.88579 -9.86183 -9.64810 -9.51291 -9.40048 -8.97367 -8.93884 -8.59546 -6.82627 -5.72467 -3.04729 0.86075 1.09431 2.57927 3.12367 3.38853 3.44187 3.46273 3.62905 4.06243 4.41173 4.46244 4.48021 4.66336 4.71688 4.75794 4.85236 4.93057 5.03179 5.03751 5.15397 5.26912 5.29254 5.29951 5.34654 5.37114 5.50573 5.54113 5.62673 5.66034 5.71486 5.74521 5.81985 5.88823 5.96819 6.02700 6.12447 6.14078 6.22935 6.25779 6.35499 6.48442 6.49771 6.57099 6.62413 6.62572 6.81283 6.98493 7.48436 7.54650 7.64775 7.79902 7.82472 8.18592 8.22493 9.19694 9.80531 10.49128 11.39852 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.002096 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.643487 B =13354.982200 C =13765.489370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.119 4.119 6 C -0.101 4.101 7 C 0.514 3.486 8 O -0.539 6.539 9 N -0.720 5.720 10 C 0.151 3.849 11 H 0.082 0.918 12 C -0.126 4.126 13 C -0.097 4.097 14 C -0.116 4.116 15 H 0.062 0.938 16 C 0.188 3.812 17 N -0.609 5.609 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.142 3.858 27 C -0.107 4.107 28 H 0.071 0.929 29 C -0.110 4.110 30 C 0.119 3.881 31 N -0.484 5.484 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.402 0.598 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.251 0.749 47 H 0.038 0.962 48 H 0.020 0.980 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.196 10.380 1.685 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.142 4.142 7 C 0.300 3.700 8 O -0.416 6.416 9 N -0.373 5.373 10 C 0.047 3.953 11 H 0.100 0.900 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.135 4.135 15 H 0.081 0.919 16 C 0.064 3.936 17 N -0.336 5.336 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.016 3.984 27 C -0.127 4.127 28 H 0.089 0.911 29 C -0.149 4.149 30 C -0.038 4.038 31 N -0.194 5.194 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.095 9.453 1.082 24.056 hybrid contribution 1.856 0.568 0.829 2.110 sum -20.239 10.020 1.911 22.664 Atomic orbital electron populations 1.20702 0.88961 1.03447 1.02936 1.21296 0.97016 0.88473 0.94839 1.21892 0.94720 0.99225 1.03309 1.21418 0.94417 0.97688 0.94966 1.20262 0.95234 0.94570 1.02096 1.20621 0.92238 1.05846 0.95476 1.20430 0.82488 0.76155 0.90917 1.90716 1.55318 1.49403 1.46170 1.46255 1.06793 1.74693 1.09548 1.21036 0.95281 0.96752 0.82264 0.90042 1.21924 0.99683 0.94719 1.00124 1.21216 0.93987 0.98224 1.00112 1.22165 0.95671 0.96183 0.99521 0.91914 1.20797 0.86640 0.89382 0.96800 1.45097 1.18088 0.99319 1.71095 1.19055 0.92123 0.93482 1.30894 0.90574 1.24820 0.98971 0.95551 1.01128 1.69975 1.39155 0.97394 1.50183 0.86145 0.82766 0.77134 0.80019 1.21680 1.21812 1.20691 1.21306 0.89767 0.89992 0.97347 1.22039 0.96064 0.96319 0.98263 0.91067 1.21635 0.93209 0.98611 1.01425 1.22577 0.89200 0.97892 0.94121 1.67522 1.09758 1.29361 1.12724 0.90503 0.90801 0.90492 0.84914 0.85008 0.87396 0.87705 0.76174 0.91452 0.92010 0.92013 0.92150 0.93872 0.93933 0.93819 0.94365 0.96273 0.91591 0.90292 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.01 0.37 -0.36 16 2 C 0.12 1.25 6.78 -82.59 -0.56 0.69 16 3 C -0.17 -1.55 9.74 -39.44 -0.38 -1.94 16 4 C -0.06 -0.56 9.86 -39.28 -0.39 -0.94 16 5 C -0.12 -1.22 4.39 -104.48 -0.46 -1.68 16 6 C -0.10 -0.85 5.86 -29.03 -0.17 -1.02 16 7 C 0.51 5.96 7.76 -10.98 -0.09 5.87 16 8 O -0.54 -8.35 15.67 5.56 0.09 -8.26 16 9 N -0.72 -7.85 4.66 -53.63 -0.25 -8.10 16 10 C 0.15 1.82 2.70 -67.75 -0.18 1.64 16 11 H 0.08 1.05 7.52 -51.93 -0.39 0.65 16 12 C -0.13 -1.63 5.42 -26.53 -0.14 -1.78 16 13 C -0.10 -1.44 5.57 -27.08 -0.15 -1.59 16 14 C -0.12 -2.01 2.31 -90.36 -0.21 -2.22 16 15 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 16 C 0.19 4.39 5.06 -3.43 -0.02 4.37 16 17 N -0.61 -15.09 3.45 -170.41 -0.59 -15.67 16 18 C -0.23 -6.24 10.29 -15.06 -0.15 -6.39 16 19 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.73 10.42 55.49 0.58 -26.15 16 22 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 C 0.14 2.75 6.89 -2.81 -0.02 2.73 16 27 C -0.11 -1.66 2.37 -89.89 -0.21 -1.88 16 28 H 0.07 1.10 6.30 -51.93 -0.33 0.77 16 29 C -0.11 -1.35 5.38 -27.01 -0.15 -1.49 16 30 C 0.12 1.35 10.86 -17.55 -0.19 1.16 16 31 N -0.48 -5.93 10.27 -9.48 -0.10 -6.03 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.40 3.94 6.83 -40.82 -0.28 3.66 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.90 7.91 -51.93 -0.41 0.49 16 44 H 0.04 1.14 7.53 -51.93 -0.39 0.75 16 45 H 0.04 1.10 7.42 -51.93 -0.39 0.71 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.95 7.98 -51.93 -0.41 0.54 16 51 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -33.77 401.37 -10.91 -44.68 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.47 Total: 1.79 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.20 Total: -5.16 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.36 Total: -55.96 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.77 -10.91 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980235805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.872 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds