Wall clock time and date at job start Wed Apr 1 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38223 * 119.61702 * 2 1 4 4 C 1.38630 * 119.15675 * 179.75012 * 3 2 1 5 5 C 1.38675 * 118.42095 * 0.50784 * 4 3 2 6 6 C 1.50703 * 120.41670 * 179.78330 * 5 4 3 7 7 C 1.50702 * 109.47244 * 269.72345 * 6 5 4 8 8 O 1.21277 * 119.99809 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99714 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.02114 * 33.93493 * 10 9 7 12 12 C 1.52523 * 109.03421 * 275.00145 * 10 9 7 13 13 C 1.53849 * 111.65610 * 293.47918 * 12 10 9 14 14 C 1.51445 * 107.03891 * 302.79907 * 13 12 10 15 15 H 1.09006 * 109.86857 * 305.81832 * 14 13 12 16 16 C 1.52323 * 117.45681 * 178.78261 * 14 13 12 17 17 N 1.48243 * 105.86579 * 214.67368 * 16 14 13 18 18 C 1.36936 * 125.78594 * 183.44882 * 17 16 14 19 19 H 1.07998 * 119.99762 * 172.81841 * 18 17 16 20 20 C 1.38810 * 120.00024 * 352.81902 * 18 17 16 21 21 N 1.31622 * 119.99961 * 6.09142 * 20 18 17 22 22 Si 1.86796 * 120.00244 * 186.09397 * 20 18 17 23 23 H 1.48498 * 109.47046 * 94.98498 * 22 20 18 24 24 H 1.48503 * 109.47027 * 214.98911 * 22 20 18 25 25 H 1.48506 * 109.46889 * 334.98738 * 22 20 18 26 26 C 1.48660 * 108.42890 * 3.18084 * 17 16 14 27 27 C 1.53067 * 103.44714 * 24.38460 * 26 17 16 28 28 H 1.08996 * 110.55785 * 75.65569 * 27 26 17 29 29 C 1.51613 * 116.67281 * 204.11682 * 27 26 17 30 30 C 1.38174 * 119.16415 * 359.51543 * 5 4 3 31 31 N 1.31852 * 119.61665 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47206 * 269.98361 * 1 2 3 33 33 H 1.09005 * 109.46722 * 29.98133 * 1 2 3 34 34 H 1.08996 * 109.47197 * 149.97500 * 1 2 3 35 35 H 1.08003 * 120.42196 * 0.03862 * 3 2 1 36 36 H 1.08003 * 120.78715 * 180.27304 * 4 3 2 37 37 H 1.08998 * 109.46790 * 149.72366 * 6 5 4 38 38 H 1.09003 * 109.46870 * 29.72607 * 6 5 4 39 39 H 0.96992 * 120.00257 * 0.02562 * 9 7 6 40 40 H 1.08993 * 109.04717 * 172.91607 * 12 10 9 41 41 H 1.09000 * 108.98510 * 53.99479 * 12 10 9 42 42 H 1.08997 * 109.93763 * 183.41920 * 13 12 10 43 43 H 1.08999 * 110.01487 * 62.21639 * 13 12 10 44 44 H 1.09001 * 110.17250 * 95.57344 * 16 14 13 45 45 H 1.09003 * 110.17105 * 333.76866 * 16 14 13 46 46 H 0.97001 * 120.00224 * 179.97438 * 21 20 18 47 47 H 1.09011 * 110.62308 * 142.86877 * 26 17 16 48 48 H 1.08996 * 110.63491 * 265.73161 * 26 17 16 49 49 H 1.09005 * 109.94411 * 295.61476 * 29 27 26 50 50 H 1.08999 * 109.94945 * 56.86466 * 29 27 26 51 51 H 1.07994 * 119.61830 * 180.24816 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1905 0.0053 5 6 4.2266 -0.0343 -0.0004 6 6 5.7323 -0.0989 0.0000 7 6 6.2346 -0.1202 -1.4206 8 8 5.4475 -0.0859 -2.3427 9 7 7.5586 -0.1775 -1.6664 10 6 8.0469 -0.1977 -3.0475 11 1 7.3851 0.4073 -3.6672 12 6 8.0321 -1.6344 -3.5594 13 6 9.0493 -2.5139 -2.8120 14 6 10.4074 -1.8663 -2.9848 15 1 10.6135 -1.7149 -4.0444 16 6 11.5960 -2.5357 -2.3071 17 7 12.4938 -1.4348 -1.8833 18 6 13.7191 -1.5840 -1.2904 19 1 14.3473 -0.7213 -1.1245 20 6 14.1537 -2.8440 -0.9027 21 7 13.4442 -3.9088 -1.2114 22 14 15.7455 -3.0285 0.0573 23 1 15.4445 -3.0738 1.5108 24 1 16.4245 -4.2858 -0.3471 25 1 16.6328 -1.8726 -0.2287 26 6 11.8413 -0.1414 -2.2170 27 6 10.3521 -0.4933 -2.2544 28 1 9.9609 -0.6102 -1.2438 29 6 9.4610 0.4062 -3.0884 30 6 3.4766 -1.1948 -0.0009 31 7 2.1586 -1.1463 -0.0005 32 1 -0.3633 -0.0003 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6508 2.1373 0.0006 36 1 4.1366 2.1139 0.0098 37 1 6.0569 -1.0037 0.5139 38 1 6.1332 0.7747 0.5142 39 1 8.1880 -0.2053 -0.9290 40 1 8.2739 -1.6358 -4.6222 41 1 7.0338 -2.0497 -3.4214 42 1 9.0586 -3.5165 -3.2394 43 1 8.7932 -2.5635 -1.7537 44 1 12.1103 -3.1903 -3.0108 45 1 11.2626 -3.1041 -1.4388 46 1 13.7481 -4.7893 -0.9408 47 1 12.0413 0.6003 -1.4436 48 1 12.1777 0.2190 -3.1891 49 1 9.4482 1.4113 -2.6667 50 1 9.8221 0.4377 -4.1163 51 1 3.9754 -2.1527 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980235805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:09 Heat of formation + Delta-G solvation = -9.197877 kcal Electronic energy + Delta-G solvation = -29916.424371 eV Core-core repulsion = 26007.634792 eV Total energy + Delta-G solvation = -3908.789578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66720 -41.09655 -39.84892 -37.11369 -34.98337 -34.71369 -33.45629 -33.20230 -32.11176 -31.01277 -30.16262 -27.89825 -27.08633 -26.57895 -24.48439 -23.53981 -22.99717 -21.94534 -21.67348 -21.39760 -20.13293 -18.74030 -18.15861 -17.68185 -17.32040 -16.94947 -16.71239 -16.25979 -15.88669 -15.73808 -15.60858 -15.43187 -15.10335 -14.79675 -14.56739 -14.41461 -14.14487 -13.85712 -13.68981 -13.62471 -13.39059 -13.20238 -13.16794 -12.98379 -12.97011 -12.78260 -12.62538 -12.47557 -12.42041 -12.35422 -11.96162 -11.87327 -11.77381 -11.38086 -10.99241 -10.96589 -10.75933 -10.66360 -10.65247 -10.38896 -9.94964 -9.68255 -8.85305 -7.83544 -5.17257 0.14578 0.38275 1.46276 1.47521 1.56446 1.71343 2.28858 2.50559 2.88531 3.34430 3.40927 3.57063 3.66690 3.71645 3.76252 3.85328 3.87261 4.04483 4.06050 4.09277 4.16968 4.38725 4.42759 4.48624 4.50825 4.59270 4.62180 4.71739 4.73068 4.76096 4.77751 4.79972 4.89141 4.89632 4.97892 5.04173 5.11570 5.15265 5.18815 5.21147 5.22316 5.28910 5.34358 5.39910 5.50827 5.60066 5.63833 5.75370 5.82814 5.85345 6.20431 6.62920 7.06740 7.11072 7.32518 7.78677 8.46481 9.27499 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.002096 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.643487 B =13354.982200 C =13765.489370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.101 3.899 3 C -0.173 4.173 4 C -0.068 4.068 5 C -0.128 4.128 6 C -0.095 4.095 7 C 0.516 3.484 8 O -0.580 6.580 9 N -0.714 5.714 10 C 0.156 3.844 11 H 0.083 0.917 12 C -0.117 4.117 13 C -0.089 4.089 14 C -0.107 4.107 15 H 0.066 0.934 16 C 0.198 3.802 17 N -0.633 5.633 18 C -0.238 4.238 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.950 5.950 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.268 1.268 26 C 0.135 3.865 27 C -0.087 4.087 28 H 0.076 0.924 29 C -0.097 4.097 30 C 0.095 3.905 31 N -0.517 5.517 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.059 0.941 44 H -0.002 1.002 45 H 0.009 0.991 46 H 0.245 0.755 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.982 13.176 2.209 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.036 4.036 3 C -0.193 4.193 4 C -0.093 4.093 5 C -0.130 4.130 6 C -0.135 4.135 7 C 0.304 3.696 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.051 3.949 11 H 0.101 0.899 12 C -0.155 4.155 13 C -0.127 4.127 14 C -0.126 4.126 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.359 5.359 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.192 1.192 26 C 0.011 3.989 27 C -0.107 4.107 28 H 0.094 0.906 29 C -0.136 4.136 30 C -0.061 4.061 31 N -0.227 5.227 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.027 0.973 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.107 0.893 50 H 0.104 0.896 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.873 12.289 1.615 26.016 hybrid contribution 2.110 -0.283 0.637 2.222 sum -20.763 12.007 2.252 24.090 Atomic orbital electron populations 1.20772 0.87139 1.04022 1.03859 1.21856 0.98493 0.88561 0.94725 1.22250 0.94957 0.99923 1.02143 1.21805 0.94921 0.98297 0.94307 1.20449 0.96131 0.94520 1.01918 1.20666 0.91145 1.08036 0.93644 1.20897 0.82110 0.74886 0.91714 1.90704 1.56252 1.51342 1.47698 1.46205 1.06922 1.74222 1.09347 1.20918 0.95156 0.95813 0.82975 0.89923 1.21837 0.98361 0.94954 1.00383 1.21135 0.92938 0.98244 1.00421 1.21972 0.94478 0.97004 0.99133 0.91591 1.20507 0.88308 0.89067 0.94765 1.45450 1.17851 1.01774 1.70864 1.19460 0.93391 0.93626 1.30203 0.90055 1.25648 1.02443 0.95451 1.02619 1.70202 1.40829 0.97440 1.51492 0.85112 0.79209 0.76944 0.78417 1.21371 1.22528 1.19242 1.21530 0.91819 0.87927 0.97632 1.21917 0.94282 0.95437 0.99018 0.90571 1.21566 0.91941 0.98793 1.01251 1.22786 0.89414 0.98782 0.95140 1.67505 1.10429 1.30800 1.13942 0.89324 0.88711 0.91403 0.82118 0.82751 0.85781 0.84768 0.75275 0.90608 0.92610 0.92697 0.92225 0.98369 0.97307 0.94608 0.93466 0.95642 0.89266 0.89553 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.17 71.24 0.72 -0.58 16 2 C 0.10 1.99 6.78 42.55 0.29 2.28 16 3 C -0.17 -2.80 9.74 22.36 0.22 -2.58 16 4 C -0.07 -1.13 9.86 22.47 0.22 -0.91 16 5 C -0.13 -2.42 4.39 -19.77 -0.09 -2.51 16 6 C -0.09 -1.36 5.86 29.10 0.17 -1.19 16 7 C 0.52 10.80 7.76 87.66 0.68 11.48 16 8 O -0.58 -17.11 15.67 -3.02 -0.05 -17.16 16 9 N -0.71 -13.58 4.66 -441.97 -2.06 -15.64 16 10 C 0.16 3.32 2.70 45.11 0.12 3.44 16 11 H 0.08 1.86 7.52 -2.39 -0.02 1.85 16 12 C -0.12 -2.81 5.42 30.72 0.17 -2.65 16 13 C -0.09 -2.58 5.57 30.37 0.17 -2.41 16 14 C -0.11 -3.65 2.31 -10.62 -0.02 -3.67 16 15 H 0.07 2.23 7.92 -2.38 -0.02 2.21 16 16 C 0.20 9.57 5.06 85.82 0.43 10.01 16 17 N -0.63 -31.61 3.45 -693.06 -2.39 -34.01 16 18 C -0.24 -13.15 10.29 84.03 0.86 -12.29 16 19 H 0.08 4.30 7.84 -2.91 -0.02 4.27 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 21 N -0.95 -57.36 10.42 21.65 0.23 -57.14 16 22 Si 0.97 45.60 29.56 68.60 2.03 47.62 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.14 5.04 6.89 85.98 0.59 5.63 16 27 C -0.09 -2.51 2.37 -10.32 -0.02 -2.54 16 28 H 0.08 2.15 6.30 -2.39 -0.02 2.14 16 29 C -0.10 -2.03 5.38 30.41 0.16 -1.86 16 30 C 0.10 2.15 10.86 84.67 0.92 3.07 16 31 N -0.52 -12.72 10.27 -183.90 -1.89 -14.61 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.79 8.08 -2.38 -0.02 0.77 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.12 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.13 1.14 8.09 -2.39 -0.02 1.12 16 39 H 0.41 6.70 6.83 -92.71 -0.63 6.07 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.73 7.91 -2.39 -0.02 1.71 16 44 H 0.00 -0.11 7.53 -2.39 -0.02 -0.13 16 45 H 0.01 0.47 7.42 -2.39 -0.02 0.46 16 46 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.09 1.75 7.98 -2.39 -0.02 1.73 16 51 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.59 401.37 2.21 -74.37 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.28 Total: 17.27 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 6.07 Total: -0.71 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.12 Total: -121.40 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.59 2.21 -74.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980235805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.174 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds