Wall clock time and date at job start Wed Apr 1 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38229 * 119.61415 * 2 1 4 4 C 1.38627 * 119.15741 * 179.75072 * 3 2 1 5 5 C 1.38679 * 118.42062 * 0.50981 * 4 3 2 6 6 C 1.50694 * 120.41760 * 179.78225 * 5 4 3 7 7 C 1.50695 * 109.47544 * 269.72138 * 6 5 4 8 8 O 1.21285 * 119.99697 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00145 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.79120 * 35.48636 * 10 9 7 12 12 C 1.53300 * 109.63109 * 274.99853 * 10 9 7 13 13 C 1.52834 * 108.21768 * 176.50238 * 12 10 9 14 14 C 1.50894 * 111.56663 * 59.05747 * 13 12 10 15 15 H 1.09004 * 109.03527 * 186.18244 * 14 13 12 16 16 C 1.53378 * 113.07938 * 65.83257 * 14 13 12 17 17 N 1.47426 * 106.51180 * 212.47038 * 16 14 13 18 18 C 1.36946 * 125.72325 * 179.29313 * 17 16 14 19 19 H 1.07995 * 119.99633 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99886 * 0.02639 * 18 17 16 21 21 N 1.31620 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46959 * 90.00180 * 22 20 18 24 24 H 1.48503 * 109.47469 * 210.00267 * 22 20 18 25 25 H 1.48505 * 109.47343 * 330.00608 * 22 20 18 26 26 C 1.47624 * 108.55325 * 359.33235 * 17 16 14 27 27 C 1.54063 * 113.56337 * 307.87230 * 14 13 12 28 28 H 1.09002 * 112.60889 * 281.00670 * 27 14 13 29 29 C 1.51228 * 109.82222 * 155.53233 * 10 9 7 30 30 C 1.38179 * 119.16134 * 359.50733 * 5 4 3 31 31 N 1.31852 * 119.61732 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46924 * 269.97906 * 1 2 3 33 33 H 1.08999 * 109.47181 * 29.98095 * 1 2 3 34 34 H 1.09000 * 109.46977 * 149.98296 * 1 2 3 35 35 H 1.07999 * 120.42263 * 0.03859 * 3 2 1 36 36 H 1.07998 * 120.79093 * 180.26804 * 4 3 2 37 37 H 1.09004 * 109.47138 * 149.71741 * 6 5 4 38 38 H 1.09000 * 109.47289 * 29.72167 * 6 5 4 39 39 H 0.96997 * 120.00000 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.71680 * 56.81820 * 12 10 9 41 41 H 1.09008 * 109.74944 * 296.20548 * 12 10 9 42 42 H 1.08994 * 109.06161 * 298.51697 * 13 12 10 43 43 H 1.09002 * 109.00610 * 179.55358 * 13 12 10 44 44 H 1.09003 * 110.04597 * 331.73154 * 16 14 13 45 45 H 1.09000 * 110.04514 * 93.15782 * 16 14 13 46 46 H 0.96996 * 120.00306 * 180.02562 * 21 20 18 47 47 H 1.08993 * 110.43168 * 266.12383 * 26 17 16 48 48 H 1.08998 * 110.43647 * 143.60778 * 26 17 16 49 49 H 1.09001 * 108.73511 * 60.89792 * 29 10 9 50 50 H 1.09000 * 108.86735 * 302.09677 * 29 10 9 51 51 H 1.07996 * 119.61734 * 180.25783 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1907 0.0053 5 6 4.2267 -0.0342 -0.0005 6 6 5.7323 -0.0986 -0.0001 7 6 6.2346 -0.1200 -1.4207 8 8 5.4475 -0.0866 -2.3428 9 7 7.5585 -0.1772 -1.6665 10 6 8.0469 -0.1974 -3.0476 11 1 7.4092 0.4266 -3.6737 12 6 8.0378 -1.6364 -3.5761 13 6 8.4681 -1.6095 -5.0424 14 6 9.8444 -1.0128 -5.2057 15 1 10.0645 -0.9123 -6.2685 16 6 10.9487 -1.8647 -4.5676 17 7 11.9807 -0.9253 -4.0922 18 6 13.1382 -1.2690 -3.4461 19 1 13.8323 -0.5015 -3.1369 20 6 13.4194 -2.6037 -3.1887 21 7 12.5737 -3.5391 -3.5660 22 14 14.9986 -3.0726 -2.3081 23 1 14.7594 -3.0977 -0.8427 24 1 15.4377 -4.4169 -2.7611 25 1 16.0541 -2.0757 -2.6202 26 6 11.5565 0.4481 -4.4287 27 6 10.0037 0.3623 -4.5294 28 1 9.5734 1.1717 -5.1192 29 6 9.4629 0.3311 -3.0986 30 6 3.4767 -1.1947 -0.0008 31 7 2.1587 -1.1462 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6508 2.1374 0.0006 36 1 4.1366 2.1140 0.0097 37 1 6.0570 -1.0034 0.5138 38 1 6.1332 0.7749 0.5140 39 1 8.1880 -0.2042 -0.9290 40 1 7.0332 -2.0515 -3.4952 41 1 8.7345 -2.2449 -2.9995 42 1 7.7531 -1.0165 -5.6124 43 1 8.4738 -2.6286 -5.4293 44 1 10.5453 -2.4323 -3.7290 45 1 11.3724 -2.5430 -5.3082 46 1 12.7700 -4.4717 -3.3859 47 1 11.9834 0.7550 -5.3835 48 1 11.8490 1.1408 -3.6396 49 1 10.0986 -0.3115 -2.4893 50 1 9.4773 1.3408 -2.6881 51 1 3.9755 -2.1525 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980235811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:18 Heat of formation + Delta-G solvation = 7.121671 kcal Electronic energy + Delta-G solvation = -30004.891023 eV Core-core repulsion = 26096.809113 eV Total energy + Delta-G solvation = -3908.081910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.70353 -39.92919 -38.75921 -35.50174 -34.21810 -33.44162 -32.48253 -31.89365 -30.81870 -29.85072 -28.71260 -26.48663 -25.85328 -24.87980 -23.75428 -22.31966 -22.09318 -21.20375 -20.50484 -19.74833 -18.23033 -17.01826 -16.90720 -16.80314 -16.53438 -16.02034 -15.30231 -15.09399 -14.89944 -14.67343 -14.56141 -13.96274 -13.80737 -13.52593 -13.50970 -13.36804 -13.18764 -12.63485 -12.59599 -12.43951 -12.21543 -12.18918 -12.06670 -11.76834 -11.64385 -11.28056 -11.15680 -11.05316 -10.86064 -10.59259 -10.53663 -10.11361 -10.00727 -9.93146 -9.77830 -9.68201 -9.63671 -9.49677 -9.42665 -8.94120 -8.83013 -8.58279 -6.80874 -5.70995 -3.03842 0.87938 1.11313 2.64308 3.17216 3.37897 3.43722 3.45534 3.65416 4.08093 4.43196 4.48072 4.49392 4.68240 4.76526 4.83225 5.01843 5.04206 5.13267 5.16519 5.28680 5.31037 5.32838 5.38295 5.50483 5.52110 5.55863 5.62742 5.66203 5.74477 5.78134 5.89912 5.90724 5.95821 5.98878 6.04603 6.09931 6.33251 6.39283 6.48416 6.51615 6.53688 6.61504 6.68106 6.70373 6.76351 6.88928 7.03066 7.57669 7.58530 7.67061 7.81685 7.86113 8.25800 8.26359 9.22186 9.82779 10.50470 11.40443 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.002188 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.575722 B =12795.064413 C =13260.115629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.119 4.119 6 C -0.100 4.100 7 C 0.513 3.487 8 O -0.537 6.537 9 N -0.722 5.722 10 C 0.150 3.850 11 H 0.080 0.920 12 C -0.125 4.125 13 C -0.095 4.095 14 C -0.114 4.114 15 H 0.058 0.942 16 C 0.187 3.813 17 N -0.605 5.605 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.137 3.863 27 C -0.091 4.091 28 H 0.074 0.926 29 C -0.114 4.114 30 C 0.119 3.881 31 N -0.484 5.484 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.791 9.724 7.715 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.299 3.701 8 O -0.413 6.413 9 N -0.372 5.372 10 C 0.046 3.954 11 H 0.098 0.902 12 C -0.163 4.163 13 C -0.133 4.133 14 C -0.133 4.133 15 H 0.076 0.924 16 C 0.062 3.938 17 N -0.332 5.332 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.011 3.989 27 C -0.111 4.111 28 H 0.092 0.908 29 C -0.152 4.152 30 C -0.038 4.038 31 N -0.194 5.194 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.073 0.927 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.714 8.771 7.104 22.716 hybrid contribution 1.879 0.444 0.736 2.066 sum -17.835 9.215 7.840 21.552 Atomic orbital electron populations 1.20702 0.88962 1.03466 1.02907 1.21297 0.97013 0.88474 0.94853 1.21892 0.94719 0.99225 1.03302 1.21418 0.94421 0.97689 0.94965 1.20267 0.95259 0.94575 1.02075 1.20616 0.92233 1.05693 0.95550 1.20410 0.82505 0.76349 0.90863 1.90725 1.55244 1.49197 1.46160 1.46160 1.06772 1.74739 1.09564 1.20691 0.95769 0.97466 0.81463 0.90176 1.21916 1.01087 0.96208 0.97106 1.20808 0.95972 1.00902 0.95644 1.21676 0.96018 0.95907 0.99720 0.92386 1.21055 0.85622 0.90104 0.97011 1.44600 1.21025 0.99793 1.67736 1.19040 0.95453 0.91727 1.29191 0.90623 1.24779 0.98564 0.95736 1.01455 1.69963 1.35818 0.99524 1.51512 0.86161 0.82925 0.77660 0.79253 1.21726 1.21754 1.20806 1.21826 0.90988 0.88893 0.97205 1.22201 0.97289 0.97112 0.94536 0.90816 1.21419 0.94443 1.00824 0.98509 1.22576 0.89206 0.97885 0.94139 1.67521 1.09750 1.29359 1.12723 0.90526 0.90793 0.90486 0.84913 0.85011 0.87489 0.87785 0.76562 0.92374 0.90681 0.92874 0.91902 0.93273 0.94320 0.93845 0.96522 0.94307 0.89702 0.92706 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.12 1.27 6.78 -82.58 -0.56 0.71 16 3 C -0.17 -1.60 9.74 -39.44 -0.38 -1.98 16 4 C -0.06 -0.57 9.86 -39.28 -0.39 -0.96 16 5 C -0.12 -1.25 4.39 -104.48 -0.46 -1.71 16 6 C -0.10 -0.87 5.86 -29.04 -0.17 -1.04 16 7 C 0.51 6.41 7.79 -10.99 -0.09 6.32 16 8 O -0.54 -8.94 15.72 5.55 0.09 -8.85 16 9 N -0.72 -8.73 5.09 -54.53 -0.28 -9.00 16 10 C 0.15 2.17 2.38 -68.67 -0.16 2.01 16 11 H 0.08 1.25 7.61 -51.93 -0.40 0.85 16 12 C -0.12 -1.99 5.42 -26.66 -0.14 -2.13 16 13 C -0.09 -1.53 5.35 -27.87 -0.15 -1.68 16 14 C -0.11 -2.08 2.69 -90.93 -0.24 -2.32 16 15 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.19 4.35 4.39 -3.34 -0.01 4.33 16 17 N -0.61 -14.81 2.97 -169.57 -0.50 -15.31 16 18 C -0.23 -6.10 10.29 -15.05 -0.15 -6.26 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.43 10.34 55.49 0.57 -25.85 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.14 2.73 6.52 -1.91 -0.01 2.72 16 27 C -0.09 -1.53 3.69 -88.55 -0.33 -1.85 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 C -0.11 -1.75 4.23 -27.63 -0.12 -1.87 16 30 C 0.12 1.38 10.86 -17.55 -0.19 1.19 16 31 N -0.48 -6.04 10.27 -9.47 -0.10 -6.14 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.11 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.34 6.75 -51.92 -0.35 0.99 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.25 5.78 -51.93 -0.30 0.95 16 45 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 49 H 0.08 1.55 7.24 -51.93 -0.38 1.17 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -33.37 400.50 -10.96 -44.33 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.46 Total: 3.35 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.29 Total: -5.25 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.30 Total: -56.31 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.37 -10.96 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980235811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.449 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds