Wall clock time and date at job start Wed Apr 1 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.46122 * 2 1 4 4 C 1.38362 * 119.30165 * 179.72017 * 3 2 1 5 5 C 1.40022 * 118.28496 * 0.52183 * 4 3 2 6 6 C 1.47846 * 120.55669 * 179.73270 * 5 4 3 7 7 O 1.21554 * 119.99713 * 173.75023 * 6 5 4 8 8 N 1.34773 * 119.99946 * 354.03133 * 6 5 4 9 9 C 1.46504 * 120.00075 * 179.72671 * 8 6 5 10 10 H 1.09000 * 109.01927 * 33.92718 * 9 8 6 11 11 C 1.52526 * 109.03009 * 274.99820 * 9 8 6 12 12 C 1.53846 * 111.65967 * 185.38441 * 11 9 8 13 13 C 1.51438 * 107.04200 * 57.19553 * 12 11 9 14 14 H 1.08999 * 109.87733 * 54.19097 * 13 12 11 15 15 C 1.52329 * 117.45025 * 181.23563 * 13 12 11 16 16 N 1.48240 * 105.86819 * 145.31595 * 15 13 12 17 17 C 1.36939 * 125.78732 * 176.77791 * 16 15 13 18 18 H 1.08002 * 120.00304 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99752 * 0.04367 * 17 16 15 20 20 N 1.31620 * 119.99837 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47338 * 59.99372 * 21 19 17 23 23 H 1.48498 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46894 * 299.99819 * 21 19 17 25 25 C 1.48659 * 108.43226 * 356.81227 * 16 15 13 26 26 C 1.53068 * 103.44281 * 335.62442 * 25 16 15 27 27 H 1.09001 * 110.55042 * 284.33596 * 26 25 16 28 28 C 1.51621 * 116.67706 * 155.88883 * 26 25 16 29 29 C 1.39522 * 118.88362 * 359.45547 * 5 4 3 30 30 C 1.50701 * 119.71505 * 180.27643 * 29 5 4 31 31 N 1.31685 * 120.56658 * 0.30215 * 29 5 4 32 32 H 1.09003 * 109.46981 * 270.02740 * 1 2 3 33 33 H 1.09004 * 109.46803 * 30.02310 * 1 2 3 34 34 H 1.08995 * 109.47597 * 150.02192 * 1 2 3 35 35 H 1.07993 * 120.34936 * 359.97438 * 3 2 1 36 36 H 1.07997 * 120.85447 * 180.27695 * 4 3 2 37 37 H 0.97005 * 119.99865 * 359.71731 * 8 6 5 38 38 H 1.09008 * 109.03987 * 305.93907 * 11 9 8 39 39 H 1.08997 * 109.05134 * 64.82010 * 11 9 8 40 40 H 1.09001 * 109.94116 * 176.58066 * 12 11 9 41 41 H 1.09003 * 109.93219 * 297.72745 * 12 11 9 42 42 H 1.09000 * 110.16920 * 264.41503 * 15 13 12 43 43 H 1.09004 * 110.17150 * 26.21098 * 15 13 12 44 44 H 0.97004 * 119.99919 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.62912 * 217.13397 * 25 16 15 46 46 H 1.08999 * 110.62967 * 94.10805 * 25 16 15 47 47 H 1.09002 * 109.94016 * 64.35866 * 28 26 25 48 48 H 1.08994 * 109.93977 * 303.11955 * 28 26 25 49 49 H 1.08995 * 109.46985 * 83.43115 * 30 29 5 50 50 H 1.09003 * 109.46858 * 203.42960 * 30 29 5 51 51 H 1.08998 * 109.47306 * 323.42648 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0059 5 6 4.2312 -0.0341 0.0004 6 6 5.7083 -0.0968 0.0004 7 8 6.2711 -1.1686 0.1103 8 7 6.4308 1.0350 -0.1158 9 6 7.8945 0.9735 -0.1098 10 1 8.2133 0.0502 -0.5934 11 6 8.3864 0.9743 1.3340 12 6 9.9213 1.0452 1.4109 13 6 10.3456 2.2951 0.6685 14 1 9.8196 3.1612 1.0701 15 6 11.8385 2.5825 0.5733 16 7 12.0465 3.2114 -0.7529 17 6 13.2353 3.6912 -1.2340 18 1 13.2805 4.1337 -2.2182 19 6 14.3826 3.6087 -0.4569 20 7 14.3275 3.0696 0.7426 21 14 16.0042 4.2639 -1.1129 22 1 15.8711 5.7141 -1.4032 23 1 17.0682 4.0584 -0.0976 24 1 16.3624 3.5405 -2.3593 25 6 10.7454 3.2335 -1.4717 26 6 9.9622 2.0882 -0.8254 27 1 10.3244 1.1255 -1.1862 28 6 8.4501 2.1701 -0.9006 29 6 3.4715 -1.2044 0.0009 30 6 4.1626 -2.5436 0.0014 31 7 2.1558 -1.1487 0.0005 32 1 -0.3633 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8901 -0.5135 35 1 1.6444 2.1381 -0.0004 36 1 4.1275 2.1263 0.0105 37 1 5.9816 1.8903 -0.2035 38 1 7.9643 1.8348 1.8531 39 1 8.0475 0.0625 1.8258 40 1 10.2390 1.1051 2.4518 41 1 10.3581 0.1648 0.9393 42 1 12.1407 3.2675 1.3656 43 1 12.4053 1.6539 0.6421 44 1 15.1291 3.0122 1.2858 45 1 10.8913 3.0466 -2.5356 46 1 10.2357 4.1840 -1.3142 47 1 8.1258 2.1119 -1.9396 48 1 8.1057 3.1029 -0.4543 49 1 4.4337 -2.8121 1.0224 50 1 3.4912 -3.2990 -0.4068 51 1 5.0626 -2.4883 -0.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980254286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:34 Heat of formation + Delta-G solvation = 15.208694 kcal Electronic energy + Delta-G solvation = -29835.751784 eV Core-core repulsion = 25928.020554 eV Total energy + Delta-G solvation = -3907.731230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16623 -39.87839 -38.70731 -35.82906 -34.02429 -33.86865 -32.94959 -31.79237 -30.63818 -29.37999 -28.86070 -27.51682 -26.12624 -24.94791 -23.35838 -22.61262 -22.00285 -21.26759 -20.50239 -19.77355 -19.44111 -18.02534 -17.09205 -16.70571 -15.86659 -15.78762 -15.48459 -15.02395 -14.90277 -14.71988 -14.32718 -14.10979 -13.85375 -13.74044 -13.64933 -13.41439 -13.23767 -12.69881 -12.59016 -12.41022 -12.33147 -12.26105 -12.20083 -12.00944 -11.86820 -11.59112 -11.28294 -10.94546 -10.82609 -10.70222 -10.54326 -10.25689 -10.19058 -10.03756 -9.92785 -9.87124 -9.69657 -9.55697 -9.38933 -9.24135 -8.95724 -8.57740 -6.80087 -5.67107 -3.00175 0.29625 0.80540 2.61623 2.91476 3.42480 3.44173 3.46585 3.47972 3.78184 4.19659 4.30068 4.36582 4.51631 4.59805 4.75761 4.87546 4.94345 5.04789 5.12213 5.15823 5.19964 5.31542 5.38507 5.39806 5.50787 5.53622 5.56428 5.58782 5.61859 5.66400 5.68064 5.77494 5.81731 5.95801 6.05469 6.13363 6.15148 6.23937 6.27994 6.32438 6.37850 6.44822 6.54813 6.63164 6.66757 6.84853 7.03606 7.29834 7.57517 7.58118 7.68104 7.86189 8.01823 8.26509 9.23810 9.84453 10.52466 11.44761 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.001943 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.673060 B =14406.609397 C =14768.388306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.190 4.190 4 C -0.035 4.035 5 C -0.198 4.198 6 C 0.562 3.438 7 O -0.526 6.526 8 N -0.720 5.720 9 C 0.149 3.851 10 H 0.088 0.912 11 C -0.123 4.123 12 C -0.097 4.097 13 C -0.117 4.117 14 H 0.062 0.938 15 C 0.188 3.812 16 N -0.609 5.609 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.144 3.856 26 C -0.105 4.105 27 H 0.077 0.923 28 C -0.107 4.107 29 C 0.196 3.804 30 C -0.111 4.111 31 N -0.493 5.493 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.252 0.748 45 H 0.038 0.962 46 H 0.019 0.981 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.454 -4.435 -0.143 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.016 3.984 3 C -0.209 4.209 4 C -0.061 4.061 5 C -0.203 4.203 6 C 0.349 3.651 7 O -0.404 6.404 8 N -0.371 5.371 9 C 0.045 3.955 10 H 0.107 0.893 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.136 4.136 14 H 0.080 0.920 15 C 0.064 3.936 16 N -0.336 5.336 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.018 3.982 26 C -0.125 4.125 27 H 0.096 0.904 28 C -0.145 4.145 29 C 0.058 3.942 30 C -0.168 4.168 31 N -0.203 5.203 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.231 0.769 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.087 0.913 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.268 -5.955 0.008 27.911 hybrid contribution 1.094 1.786 -0.255 2.110 sum -26.175 -4.169 -0.246 26.506 Atomic orbital electron populations 1.20798 0.88439 1.03840 1.03453 1.21555 0.97313 0.88275 0.91229 1.21883 0.94504 0.99556 1.05002 1.21765 0.94732 0.97251 0.92376 1.20810 0.94650 0.94901 1.09933 1.17980 0.86101 0.84368 0.76656 1.90746 1.72237 1.28151 1.49268 1.46111 1.07792 1.08899 1.74256 1.21164 0.77223 1.00422 0.96681 0.89346 1.21904 0.96916 1.01825 0.95563 1.21208 0.93259 0.98310 1.00760 1.22178 1.00201 0.96714 0.94525 0.91966 1.20804 0.87642 0.97334 0.87804 1.45090 1.03345 1.70841 1.14347 1.19019 0.84617 1.32212 0.99612 0.90596 1.24788 0.97834 1.01361 0.96629 1.69953 1.27581 1.49644 1.09841 0.86212 0.83410 0.78574 0.77635 1.21269 1.21636 1.21240 1.21274 0.87472 0.94262 0.95202 1.22002 0.92261 1.00548 0.97709 0.90436 1.21576 0.96518 0.96994 0.99456 1.21542 0.88462 0.95536 0.88701 1.21076 1.00663 0.90650 1.04372 1.67513 1.09094 1.29084 1.14627 0.89945 0.90343 0.90138 0.84145 0.84319 0.76911 0.92310 0.91932 0.91659 0.91646 0.93226 0.94304 0.93781 0.94331 0.96310 0.91596 0.91395 0.89791 0.91286 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.01 0.37 -0.18 16 2 C 0.15 1.29 6.78 -82.51 -0.56 0.73 16 3 C -0.19 -1.31 9.72 -39.49 -0.38 -1.70 16 4 C -0.04 -0.27 9.63 -38.87 -0.37 -0.64 16 5 C -0.20 -2.06 5.89 -104.82 -0.62 -2.68 16 6 C 0.56 6.67 7.66 -12.33 -0.09 6.58 16 7 O -0.53 -7.73 13.00 5.32 0.07 -7.66 16 8 N -0.72 -7.34 4.99 -54.57 -0.27 -7.61 16 9 C 0.15 1.82 2.45 -67.75 -0.17 1.66 16 10 H 0.09 1.25 7.52 -51.93 -0.39 0.86 16 11 C -0.12 -1.61 5.37 -26.53 -0.14 -1.75 16 12 C -0.10 -1.49 5.70 -27.08 -0.15 -1.64 16 13 C -0.12 -2.09 2.31 -90.36 -0.21 -2.30 16 14 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 15 C 0.19 4.52 5.07 -3.43 -0.02 4.50 16 16 N -0.61 -15.55 3.45 -170.41 -0.59 -16.14 16 17 C -0.23 -6.34 10.30 -15.06 -0.16 -6.50 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.27 10.36 55.49 0.58 -26.69 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.90 6.90 -2.81 -0.02 2.88 16 26 C -0.11 -1.75 2.48 -89.89 -0.22 -1.98 16 27 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 28 C -0.11 -1.33 5.17 -27.01 -0.14 -1.47 16 29 C 0.20 2.21 6.82 -82.18 -0.56 1.65 16 30 C -0.11 -1.19 8.88 36.01 0.32 -0.87 16 31 N -0.49 -5.35 10.17 -5.42 -0.06 -5.41 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.14 0.67 6.57 -52.49 -0.34 0.33 16 37 H 0.40 2.95 6.76 -40.82 -0.28 2.67 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 42 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 43 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.78 7.98 -51.93 -0.41 0.37 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.10 1.24 5.84 -51.93 -0.30 0.94 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -33.08 396.88 -10.90 -43.99 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.36 Total: 0.40 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.23 Total: -4.10 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.34 Total: -55.85 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.07 Total: -7.66 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.08 -10.90 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980254286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.198 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds