Wall clock time and date at job start Wed Apr 1 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.46122 * 2 1 4 4 C 1.38362 * 119.30165 * 179.72017 * 3 2 1 5 5 C 1.40022 * 118.28496 * 0.52183 * 4 3 2 6 6 C 1.47846 * 120.55669 * 179.73270 * 5 4 3 7 7 O 1.21554 * 119.99713 * 173.75023 * 6 5 4 8 8 N 1.34773 * 119.99946 * 354.03133 * 6 5 4 9 9 C 1.46504 * 120.00075 * 179.72671 * 8 6 5 10 10 H 1.09000 * 109.01927 * 33.92718 * 9 8 6 11 11 C 1.52526 * 109.03009 * 274.99820 * 9 8 6 12 12 C 1.53846 * 111.65967 * 185.38441 * 11 9 8 13 13 C 1.51438 * 107.04200 * 57.19553 * 12 11 9 14 14 H 1.08999 * 109.87733 * 54.19097 * 13 12 11 15 15 C 1.52329 * 117.45025 * 181.23563 * 13 12 11 16 16 N 1.48240 * 105.86819 * 145.31595 * 15 13 12 17 17 C 1.36939 * 125.78732 * 176.77791 * 16 15 13 18 18 H 1.08002 * 120.00304 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99752 * 0.04367 * 17 16 15 20 20 N 1.31620 * 119.99837 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47338 * 59.99372 * 21 19 17 23 23 H 1.48498 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46894 * 299.99819 * 21 19 17 25 25 C 1.48659 * 108.43226 * 356.81227 * 16 15 13 26 26 C 1.53068 * 103.44281 * 335.62442 * 25 16 15 27 27 H 1.09001 * 110.55042 * 284.33596 * 26 25 16 28 28 C 1.51621 * 116.67706 * 155.88883 * 26 25 16 29 29 C 1.39522 * 118.88362 * 359.45547 * 5 4 3 30 30 C 1.50701 * 119.71505 * 180.27643 * 29 5 4 31 31 N 1.31685 * 120.56658 * 0.30215 * 29 5 4 32 32 H 1.09003 * 109.46981 * 270.02740 * 1 2 3 33 33 H 1.09004 * 109.46803 * 30.02310 * 1 2 3 34 34 H 1.08995 * 109.47597 * 150.02192 * 1 2 3 35 35 H 1.07993 * 120.34936 * 359.97438 * 3 2 1 36 36 H 1.07997 * 120.85447 * 180.27695 * 4 3 2 37 37 H 0.97005 * 119.99865 * 359.71731 * 8 6 5 38 38 H 1.09008 * 109.03987 * 305.93907 * 11 9 8 39 39 H 1.08997 * 109.05134 * 64.82010 * 11 9 8 40 40 H 1.09001 * 109.94116 * 176.58066 * 12 11 9 41 41 H 1.09003 * 109.93219 * 297.72745 * 12 11 9 42 42 H 1.09000 * 110.16920 * 264.41503 * 15 13 12 43 43 H 1.09004 * 110.17150 * 26.21098 * 15 13 12 44 44 H 0.97004 * 119.99919 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.62912 * 217.13397 * 25 16 15 46 46 H 1.08999 * 110.62967 * 94.10805 * 25 16 15 47 47 H 1.09002 * 109.94016 * 64.35866 * 28 26 25 48 48 H 1.08994 * 109.93977 * 303.11955 * 28 26 25 49 49 H 1.08995 * 109.46985 * 83.43115 * 30 29 5 50 50 H 1.09003 * 109.46858 * 203.42960 * 30 29 5 51 51 H 1.08998 * 109.47306 * 323.42648 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0059 5 6 4.2312 -0.0341 0.0004 6 6 5.7083 -0.0968 0.0004 7 8 6.2711 -1.1686 0.1103 8 7 6.4308 1.0350 -0.1158 9 6 7.8945 0.9735 -0.1098 10 1 8.2133 0.0502 -0.5934 11 6 8.3864 0.9743 1.3340 12 6 9.9213 1.0452 1.4109 13 6 10.3456 2.2951 0.6685 14 1 9.8196 3.1612 1.0701 15 6 11.8385 2.5825 0.5733 16 7 12.0465 3.2114 -0.7529 17 6 13.2353 3.6912 -1.2340 18 1 13.2805 4.1337 -2.2182 19 6 14.3826 3.6087 -0.4569 20 7 14.3275 3.0696 0.7426 21 14 16.0042 4.2639 -1.1129 22 1 15.8711 5.7141 -1.4032 23 1 17.0682 4.0584 -0.0976 24 1 16.3624 3.5405 -2.3593 25 6 10.7454 3.2335 -1.4717 26 6 9.9622 2.0882 -0.8254 27 1 10.3244 1.1255 -1.1862 28 6 8.4501 2.1701 -0.9006 29 6 3.4715 -1.2044 0.0009 30 6 4.1626 -2.5436 0.0014 31 7 2.1558 -1.1487 0.0005 32 1 -0.3633 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8901 -0.5135 35 1 1.6444 2.1381 -0.0004 36 1 4.1275 2.1263 0.0105 37 1 5.9816 1.8903 -0.2035 38 1 7.9643 1.8348 1.8531 39 1 8.0475 0.0625 1.8258 40 1 10.2390 1.1051 2.4518 41 1 10.3581 0.1648 0.9393 42 1 12.1407 3.2675 1.3656 43 1 12.4053 1.6539 0.6421 44 1 15.1291 3.0122 1.2858 45 1 10.8913 3.0466 -2.5356 46 1 10.2357 4.1840 -1.3142 47 1 8.1258 2.1119 -1.9396 48 1 8.1057 3.1029 -0.4543 49 1 4.4337 -2.8121 1.0224 50 1 3.4912 -3.2990 -0.4068 51 1 5.0626 -2.4883 -0.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980254286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:33 Heat of formation + Delta-G solvation = -5.086978 kcal Electronic energy + Delta-G solvation = -29836.631870 eV Core-core repulsion = 25928.020554 eV Total energy + Delta-G solvation = -3908.611316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92889 -40.97248 -39.83603 -37.17196 -35.26454 -34.51826 -34.02678 -33.31702 -31.97979 -30.43896 -29.97884 -28.45265 -27.56074 -26.64576 -24.00959 -23.64348 -23.26397 -22.20960 -21.66445 -21.27879 -20.82260 -18.89657 -18.68949 -17.84249 -16.84286 -16.74099 -16.39872 -16.30054 -15.93485 -15.81645 -15.62647 -15.55667 -15.10537 -14.82196 -14.46754 -14.21922 -14.14965 -13.98050 -13.66373 -13.53581 -13.34646 -13.31978 -13.13264 -13.04611 -12.89020 -12.86728 -12.82503 -12.71489 -12.59216 -12.11042 -11.96997 -11.76071 -11.73765 -11.44317 -11.20840 -10.97920 -10.88630 -10.82113 -10.67861 -10.41249 -10.12901 -9.75564 -8.87657 -7.82484 -5.17514 -0.37673 0.20188 1.45181 1.48742 1.54935 1.81279 2.03696 2.50598 2.74987 3.17792 3.35334 3.54164 3.58305 3.66603 3.70276 3.73914 3.75639 3.92207 4.05348 4.14570 4.33755 4.39258 4.47332 4.48565 4.55219 4.57302 4.64724 4.68740 4.71806 4.73278 4.78330 4.81059 4.81128 4.95305 4.97447 5.05175 5.08006 5.09106 5.14788 5.16799 5.20658 5.25916 5.31695 5.37720 5.48453 5.53573 5.57546 5.67227 5.76635 5.82906 6.19703 6.51153 6.92249 7.10388 7.19279 7.77887 8.45184 9.27893 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.001943 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.673060 B =14406.609397 C =14768.388306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.142 3.858 3 C -0.181 4.181 4 C -0.030 4.030 5 C -0.213 4.213 6 C 0.561 3.439 7 O -0.562 6.562 8 N -0.705 5.705 9 C 0.157 3.843 10 H 0.067 0.933 11 C -0.112 4.112 12 C -0.092 4.092 13 C -0.105 4.105 14 H 0.077 0.923 15 C 0.197 3.803 16 N -0.635 5.635 17 C -0.240 4.240 18 H 0.083 0.917 19 C -0.071 4.071 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.278 1.278 25 C 0.138 3.862 26 C -0.090 4.090 27 H 0.061 0.939 28 C -0.093 4.093 29 C 0.173 3.827 30 C -0.105 4.105 31 N -0.519 5.519 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.414 0.586 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.011 0.989 43 H -0.002 1.002 44 H 0.245 0.755 45 H 0.042 0.958 46 H 0.036 0.964 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.557 -2.184 -1.011 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 C -0.201 4.201 4 C -0.055 4.055 5 C -0.219 4.219 6 C 0.349 3.651 7 O -0.443 6.443 8 N -0.356 5.356 9 C 0.052 3.948 10 H 0.086 0.914 11 C -0.151 4.151 12 C -0.131 4.131 13 C -0.124 4.124 14 H 0.095 0.905 15 C 0.072 3.928 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.100 0.900 19 C -0.264 4.264 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.110 4.110 27 H 0.079 0.921 28 C -0.131 4.131 29 C 0.035 3.965 30 C -0.162 4.162 31 N -0.230 5.230 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.196 0.804 36 H 0.189 0.811 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.104 0.896 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -30.425 -3.672 -0.891 30.659 hybrid contribution 1.992 1.102 -0.008 2.277 sum -28.433 -2.569 -0.899 28.563 Atomic orbital electron populations 1.20904 0.86308 1.04798 1.04332 1.22203 0.98873 0.88264 0.90258 1.22311 0.94353 1.00424 1.02973 1.22150 0.95360 0.97194 0.90839 1.20715 0.93541 0.95960 1.11654 1.18251 0.86838 0.84067 0.75905 1.90740 1.73031 1.29596 1.50901 1.45830 1.06647 1.09442 1.73688 1.20883 0.78526 0.99531 0.95819 0.91431 1.21781 0.94498 1.02406 0.96399 1.21147 0.95334 0.96423 1.00201 1.21990 0.95739 0.98382 0.96298 0.90483 1.20529 0.91380 0.94322 0.86530 1.45462 1.04642 1.70616 1.15441 1.19454 0.85970 1.31605 0.99855 0.89966 1.25664 1.01353 1.02316 0.97069 1.70195 1.27839 1.51136 1.11051 0.85155 0.78980 0.78331 0.76899 1.20152 1.22212 1.20428 1.21494 0.85747 0.96186 0.95150 1.21856 0.95145 0.98330 0.95657 0.92060 1.21470 0.92644 0.97948 1.01031 1.21569 0.89065 0.95810 0.90080 1.20940 1.00148 0.91448 1.03631 1.67506 1.08925 1.30848 1.15744 0.88953 0.87708 0.90884 0.80416 0.81054 0.74802 0.90387 0.92485 0.91698 0.93055 0.97109 0.98343 0.94581 0.93986 0.94656 0.89604 0.89030 0.90503 0.90878 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 71.24 0.72 -0.05 16 2 C 0.14 2.01 6.78 42.57 0.29 2.30 16 3 C -0.18 -1.76 9.72 22.33 0.22 -1.55 16 4 C -0.03 -0.34 9.63 22.73 0.22 -0.12 16 5 C -0.21 -4.08 5.89 -19.99 -0.12 -4.20 16 6 C 0.56 12.55 7.66 86.79 0.67 13.21 16 7 O -0.56 -16.65 13.00 -3.88 -0.05 -16.70 16 8 N -0.70 -12.20 4.99 -444.85 -2.22 -14.42 16 9 C 0.16 3.48 2.45 45.11 0.11 3.60 16 10 H 0.07 1.85 7.52 -2.39 -0.02 1.83 16 11 C -0.11 -2.71 5.37 30.72 0.16 -2.55 16 12 C -0.09 -2.83 5.70 30.37 0.17 -2.66 16 13 C -0.10 -3.72 2.31 -10.62 -0.02 -3.74 16 14 H 0.08 2.54 7.92 -2.39 -0.02 2.52 16 15 C 0.20 9.85 5.07 85.82 0.43 10.29 16 16 N -0.63 -32.95 3.45 -693.06 -2.39 -35.34 16 17 C -0.24 -13.65 10.30 84.03 0.87 -12.79 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 20 N -0.95 -58.75 10.36 21.65 0.22 -58.52 16 21 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 C 0.14 5.42 6.90 85.99 0.59 6.01 16 26 C -0.09 -2.88 2.48 -10.32 -0.03 -2.90 16 27 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 28 C -0.09 -1.98 5.17 30.41 0.16 -1.82 16 29 C 0.17 3.84 6.82 42.89 0.29 4.14 16 30 C -0.10 -2.36 8.88 71.24 0.63 -1.73 16 31 N -0.52 -10.83 10.17 -171.06 -1.74 -12.57 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.21 8.07 -2.39 -0.02 0.19 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.17 0.72 6.57 -2.91 -0.02 0.70 16 37 H 0.41 4.20 6.76 -92.70 -0.63 3.57 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 42 H 0.01 0.60 7.30 -2.39 -0.02 0.59 16 43 H 0.00 -0.10 7.60 -2.39 -0.02 -0.11 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.09 2.26 5.84 -2.39 -0.01 2.25 16 Total: -1.00 -77.12 396.88 1.99 -75.13 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.30 Total: 12.08 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.84 Total: 1.74 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -6.13 Total: -120.85 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.12 1.99 -75.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980254286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.042 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds