Wall clock time and date at job start Wed Apr 1 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38223 * 120.42055 * 2 1 4 4 N 1.31861 * 120.75919 * 179.97438 * 3 2 1 5 5 C 1.31885 * 121.72417 * 359.70492 * 4 3 2 6 6 C 1.38178 * 120.76804 * 0.57933 * 5 4 3 7 7 C 1.50702 * 120.41887 * 179.70371 * 6 5 4 8 8 C 1.53001 * 109.47338 * 269.72953 * 7 6 5 9 9 C 1.50693 * 109.47267 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99824 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00176 * 179.97438 * 9 8 7 12 12 C 1.47666 * 134.45380 * 180.02562 * 11 9 8 13 13 C 1.53440 * 85.97261 * 155.71071 * 12 11 9 14 14 C 1.47667 * 134.45117 * 359.97438 * 11 9 8 15 15 C 1.52674 * 113.71030 * 268.85570 * 13 12 11 16 16 C 1.53177 * 109.33048 * 171.27478 * 15 13 12 17 17 C 1.53151 * 109.37346 * 59.04880 * 16 15 13 18 18 N 1.46894 * 109.09187 * 303.54014 * 17 16 15 19 19 C 1.36936 * 120.68370 * 235.32692 * 18 17 16 20 20 H 1.08001 * 120.00591 * 26.92064 * 19 18 17 21 21 C 1.38813 * 119.99671 * 206.92801 * 19 18 17 22 22 N 1.31616 * 120.00348 * 17.09985 * 21 19 18 23 23 Si 1.86805 * 119.99961 * 197.09647 * 21 19 18 24 24 H 1.48500 * 109.47016 * 90.00375 * 23 21 19 25 25 H 1.48503 * 109.47057 * 209.99654 * 23 21 19 26 26 H 1.48497 * 109.47327 * 329.99958 * 23 21 19 27 27 C 1.47111 * 118.62766 * 55.33799 * 18 17 16 28 28 C 1.38631 * 120.41322 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47357 * 270.02944 * 1 2 3 30 30 H 1.09007 * 109.46322 * 30.02347 * 1 2 3 31 31 H 1.08997 * 109.47200 * 150.02181 * 1 2 3 32 32 H 1.07990 * 119.62003 * 359.95589 * 3 2 1 33 33 H 1.08002 * 119.61311 * 180.31258 * 5 4 3 34 34 H 1.09002 * 109.47259 * 149.72685 * 7 6 5 35 35 H 1.09000 * 109.46909 * 29.72694 * 7 6 5 36 36 H 1.09002 * 109.47164 * 59.99674 * 8 7 6 37 37 H 1.08999 * 109.46664 * 300.00230 * 8 7 6 38 38 H 1.09002 * 113.79861 * 41.44822 * 12 11 9 39 39 H 1.09008 * 113.79357 * 269.97505 * 12 11 9 40 40 H 1.09001 * 113.79136 * 90.02510 * 14 11 9 41 41 H 1.08998 * 113.79560 * 318.54980 * 14 11 9 42 42 H 1.09004 * 109.51908 * 51.30759 * 15 13 12 43 43 H 1.09001 * 109.48595 * 291.22624 * 15 13 12 44 44 H 1.09003 * 109.49107 * 299.07873 * 16 15 13 45 45 H 1.09002 * 109.49739 * 179.02235 * 16 15 13 46 46 H 1.09001 * 109.52902 * 63.41830 * 17 16 15 47 47 H 1.08999 * 109.53575 * 183.56993 * 17 16 15 48 48 H 0.96998 * 120.00428 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.63826 * 68.30994 * 27 18 17 50 50 H 1.08995 * 109.64283 * 188.72220 * 27 18 17 51 51 H 1.08002 * 120.79516 * 0.04472 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1997 0.0005 5 6 4.2256 0.0821 0.0068 6 6 3.5947 -1.1473 0.0011 7 6 4.4025 -2.4195 0.0017 8 6 4.6765 -2.8503 -1.4406 9 6 5.4848 -4.1221 -1.4400 10 8 5.8094 -4.6339 -0.3895 11 7 5.8462 -4.6915 -2.6070 12 6 6.6128 -5.8988 -2.9750 13 6 5.8388 -5.8548 -4.2992 14 6 5.6334 -4.3584 -4.0298 15 6 4.5441 -6.6638 -4.2807 16 6 3.7497 -6.3785 -5.5589 17 6 4.5965 -6.7555 -6.7781 18 7 5.8666 -6.0193 -6.7271 19 6 6.2622 -5.2347 -7.7774 20 1 5.5237 -4.7962 -8.4322 21 6 7.6126 -5.0031 -8.0006 22 7 8.5151 -5.7798 -7.4399 23 14 8.1489 -3.5890 -9.0971 24 1 8.3295 -2.3659 -8.2745 25 1 9.4328 -3.9348 -9.7584 26 1 7.1109 -3.3421 -10.1299 27 6 6.7050 -6.1426 -5.5246 28 6 2.2089 -1.1955 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3632 0.8899 -0.5143 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6677 2.1275 -0.0007 33 1 5.3047 0.1283 0.0121 34 1 3.8458 -3.2032 0.5155 35 1 5.3484 -2.2490 0.5158 36 1 5.2333 -2.0666 -1.9544 37 1 3.7306 -3.0207 -1.9547 38 1 6.3837 -6.7695 -2.3605 39 1 7.6830 -5.7235 -3.0851 40 1 6.4118 -3.7243 -4.4541 41 1 4.6265 -4.0058 -4.2530 42 1 3.9497 -6.3801 -3.4122 43 1 4.7803 -7.7266 -4.2287 44 1 3.5004 -5.3183 -5.6032 45 1 2.8329 -6.9680 -5.5567 46 1 4.7956 -7.8271 -6.7662 47 1 4.0591 -6.4948 -7.6899 48 1 9.4586 -5.6182 -7.5961 49 1 7.1064 -7.1540 -5.4600 50 1 7.5245 -5.4258 -5.5742 51 1 1.6887 -2.1421 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981883071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:29 Heat of formation + Delta-G solvation = 23.469491 kcal Electronic energy + Delta-G solvation = -29944.581244 eV Core-core repulsion = 26037.208229 eV Total energy + Delta-G solvation = -3907.373015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81730 -41.24024 -39.65081 -37.37107 -35.59575 -34.60804 -34.49045 -32.22954 -31.77269 -30.88950 -28.16504 -27.66658 -27.28184 -27.14453 -25.36624 -23.96339 -23.87496 -22.24961 -21.66394 -20.24801 -19.21066 -18.62555 -18.08981 -17.82174 -17.69790 -17.04450 -16.83295 -16.48514 -15.72019 -15.64593 -15.31958 -15.25686 -15.19064 -14.69771 -14.44611 -14.22803 -14.13912 -14.00101 -13.96922 -13.81546 -13.64928 -13.32160 -13.22996 -13.14057 -13.10409 -12.85329 -12.67295 -12.52074 -12.44377 -12.19187 -12.01325 -11.95654 -11.76809 -11.53944 -11.28391 -11.03092 -10.82308 -10.51786 -10.48165 -10.38213 -9.73916 -9.68668 -8.62832 -7.83214 -5.25885 0.12453 0.32020 1.49236 1.52060 1.58692 1.59059 1.86419 2.54447 2.80394 3.24785 3.31357 3.45250 3.59598 3.81162 3.84440 3.88062 3.92661 3.99819 4.05439 4.09351 4.13470 4.17197 4.34895 4.39965 4.42662 4.48158 4.52871 4.60886 4.64331 4.67054 4.68797 4.77518 4.82706 4.86456 4.88578 4.94625 5.04959 5.07443 5.11720 5.18033 5.22980 5.29363 5.31566 5.32004 5.36506 5.45594 5.59895 5.69374 5.77438 5.80089 6.42817 6.74610 7.01882 7.10731 7.19729 7.91210 8.42888 9.23113 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002551 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.312115 B =10974.790045 C =11590.303178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C 0.078 3.922 4 N -0.508 5.508 5 C 0.078 3.922 6 C -0.127 4.127 7 C -0.050 4.050 8 C -0.119 4.119 9 C 0.529 3.471 10 O -0.588 6.588 11 N -0.637 5.637 12 C 0.114 3.886 13 C -0.104 4.104 14 C 0.131 3.869 15 C -0.077 4.077 16 C -0.120 4.120 17 C 0.138 3.862 18 N -0.606 5.606 19 C -0.251 4.251 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.200 3.800 28 C -0.080 4.080 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.012 0.988 47 H 0.053 0.947 48 H 0.248 0.752 49 H -0.003 1.003 50 H 0.060 0.940 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 8.216 14.005 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 C -0.079 4.079 4 N -0.216 5.216 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.089 4.089 8 C -0.159 4.159 9 C 0.321 3.679 10 O -0.470 6.470 11 N -0.371 5.371 12 C -0.009 4.009 13 C -0.106 4.106 14 C 0.009 3.991 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.013 3.987 18 N -0.329 5.329 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.786 3.214 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.195 1.195 27 C 0.074 3.926 28 C -0.106 4.106 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.030 0.970 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.015 0.985 50 H 0.079 0.921 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.613 8.865 14.678 23.191 hybrid contribution 0.878 -0.355 -0.817 1.251 sum -14.735 8.510 13.861 21.947 Atomic orbital electron populations 1.20793 0.88004 1.04231 1.03528 1.21263 0.99161 0.93500 0.99692 1.23092 0.89622 0.98900 0.96314 1.67679 1.09568 1.31851 1.12512 1.22853 1.00854 0.87417 0.96694 1.20864 0.95024 0.96033 1.01020 1.20141 0.99982 0.93545 0.95182 1.21565 1.01246 0.93803 0.99276 1.20886 0.79786 0.85826 0.81399 1.90661 1.58850 1.65834 1.31621 1.50257 1.53562 1.27421 1.05890 1.23162 0.96405 0.87885 0.93476 1.22604 0.97635 0.95760 0.94606 1.23132 1.02371 0.96813 0.76826 1.21075 0.93608 0.98795 0.97945 1.21883 0.97987 1.01655 0.94372 1.21063 0.86927 0.93602 0.97129 1.44293 1.20474 1.53390 1.14757 1.19468 0.90605 1.21438 1.06602 0.91406 1.25644 0.96689 1.00979 1.00947 1.70156 1.00192 1.38534 1.49252 0.85415 0.77092 0.79936 0.78922 1.21239 1.22843 1.19454 1.20403 0.91700 0.97626 0.82874 1.21727 0.93159 0.99413 0.96324 0.89861 0.89990 0.90426 0.81066 0.82372 0.90090 0.90628 0.88090 0.87252 0.90027 0.90422 0.90707 0.88668 0.91507 0.92110 0.92047 0.89983 0.97030 0.92839 0.94269 0.98538 0.92136 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.04 71.24 0.72 -0.16 16 2 C -0.13 -1.95 5.90 -19.77 -0.12 -2.07 16 3 C 0.08 1.34 10.86 84.68 0.92 2.26 16 4 N -0.51 -11.30 10.36 -195.85 -2.03 -13.33 16 5 C 0.08 1.61 10.86 84.67 0.92 2.52 16 6 C -0.13 -2.34 5.15 -19.77 -0.10 -2.44 16 7 C -0.05 -0.97 4.66 29.85 0.14 -0.83 16 8 C -0.12 -2.45 5.43 29.85 0.16 -2.29 16 9 C 0.53 15.23 8.06 87.65 0.71 15.94 16 10 O -0.59 -20.91 16.71 -3.03 -0.05 -20.96 16 11 N -0.64 -18.73 3.45 -843.45 -2.91 -21.64 16 12 C 0.11 3.57 7.97 86.30 0.69 4.26 16 13 C -0.10 -3.38 0.87 -52.03 -0.05 -3.43 16 14 C 0.13 3.88 7.59 86.29 0.65 4.54 16 15 C -0.08 -2.16 5.02 30.55 0.15 -2.01 16 16 C -0.12 -3.39 6.00 30.70 0.18 -3.20 16 17 C 0.14 5.13 6.45 86.35 0.56 5.69 16 18 N -0.61 -27.62 3.01 -699.54 -2.10 -29.72 16 19 C -0.25 -12.76 9.60 84.03 0.81 -11.96 16 20 H 0.07 3.38 7.89 -2.91 -0.02 3.35 16 21 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 22 N -0.93 -52.73 11.16 21.65 0.24 -52.49 16 23 Si 0.96 42.94 29.59 68.60 2.03 44.97 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.20 8.70 4.43 86.20 0.38 9.09 16 28 C -0.08 -1.26 9.55 22.47 0.21 -1.05 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 31 H 0.08 0.53 8.10 -2.39 -0.02 0.52 16 32 H 0.17 2.06 8.06 -2.92 -0.02 2.04 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 34 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 35 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.45 8.09 -2.39 -0.02 2.43 16 39 H 0.08 2.55 8.09 -2.38 -0.02 2.53 16 40 H 0.07 2.47 7.98 -2.39 -0.02 2.45 16 41 H 0.10 2.47 7.36 -2.39 -0.02 2.45 16 42 H 0.07 1.70 8.02 -2.39 -0.02 1.68 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.72 7.36 -2.39 -0.02 1.70 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 48 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.06 3.01 5.95 -2.39 -0.01 3.00 16 51 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -66.34 409.41 3.43 -62.91 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.90 Total: 17.47 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 7.36 Total: 12.79 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -6.80 Total: -117.17 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -66.34 3.43 -62.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981883071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.382 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds