Wall clock time and date at job start Wed Apr 1 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38679 * 120.78525 * 2 1 4 4 C 1.38186 * 119.15772 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.76543 * 0.02562 * 4 3 2 6 6 C 1.31855 * 121.72979 * 359.69022 * 5 4 3 7 7 C 1.38233 * 120.75896 * 0.57577 * 6 5 4 8 8 C 1.50698 * 120.41724 * 179.72871 * 7 6 5 9 9 C 1.50698 * 109.47394 * 264.72475 * 8 7 6 10 10 O 1.21280 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.47201 * 126.70723 * 0.03255 * 11 9 8 13 13 C 1.53757 * 106.40870 * 211.29750 * 12 11 9 14 14 C 1.53002 * 111.22215 * 102.94207 * 13 12 11 15 15 C 1.54315 * 109.99818 * 228.80584 * 13 12 11 16 16 N 1.48114 * 104.71202 * 136.65995 * 15 13 12 17 17 C 1.36934 * 127.84276 * 140.21586 * 16 15 13 18 18 H 1.07996 * 120.00277 * 343.75850 * 17 16 15 19 19 C 1.38814 * 119.99579 * 163.75420 * 17 16 15 20 20 N 1.31615 * 120.00276 * 351.59814 * 19 17 16 21 21 Si 1.86801 * 119.99741 * 171.60176 * 19 17 16 22 22 H 1.48501 * 109.47223 * 94.97736 * 21 19 17 23 23 H 1.48500 * 109.46964 * 214.98064 * 21 19 17 24 24 H 1.48498 * 109.47178 * 334.97971 * 21 19 17 25 25 C 1.51017 * 104.41710 * 319.90888 * 16 15 13 26 26 C 1.54317 * 103.32535 * 40.06209 * 25 16 15 27 27 C 1.53000 * 112.07775 * 98.20851 * 26 25 16 28 28 C 1.47211 * 126.70070 * 180.02562 * 11 9 8 29 29 H 1.09000 * 109.47117 * 269.97661 * 1 2 3 30 30 H 1.09007 * 109.47570 * 29.97317 * 1 2 3 31 31 H 1.09002 * 109.47519 * 149.97274 * 1 2 3 32 32 H 1.07998 * 120.42299 * 0.04982 * 3 2 1 33 33 H 1.08003 * 119.61462 * 180.02562 * 4 3 2 34 34 H 1.07996 * 119.62029 * 180.28281 * 6 5 4 35 35 H 1.09007 * 109.47193 * 144.72029 * 8 7 6 36 36 H 1.09007 * 109.47209 * 24.72795 * 8 7 6 37 37 H 1.09000 * 110.06824 * 330.53575 * 12 11 9 38 38 H 1.08999 * 110.06531 * 92.00644 * 12 11 9 39 39 H 1.08999 * 109.46925 * 302.39113 * 14 13 12 40 40 H 1.09004 * 109.47214 * 62.39347 * 14 13 12 41 41 H 1.09001 * 109.47498 * 182.39030 * 14 13 12 42 42 H 1.09000 * 110.39319 * 255.47266 * 15 13 12 43 43 H 1.09006 * 110.38350 * 17.85747 * 15 13 12 44 44 H 0.97007 * 120.00157 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.84294 * 281.80971 * 25 16 15 46 46 H 1.09008 * 111.26349 * 158.51160 * 25 16 15 47 47 H 1.08992 * 109.47053 * 182.00864 * 27 26 25 48 48 H 1.09003 * 109.47155 * 62.00695 * 27 26 25 49 49 H 1.09002 * 109.47112 * 302.01123 * 27 26 25 50 50 H 1.08998 * 110.06780 * 29.46204 * 28 11 9 51 51 H 1.08997 * 110.10748 * 267.96602 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2402 0.0002 -0.0016 6 6 3.5983 -1.1515 0.0040 7 6 2.2166 -1.1908 -0.0009 8 6 1.4908 -2.5115 -0.0006 9 6 1.1394 -2.8919 -1.4158 10 8 1.4475 -2.1622 -2.3342 11 7 0.4819 -4.0426 -1.6608 12 6 0.0374 -5.0312 -0.6648 13 6 0.0917 -6.4019 -1.3592 14 6 1.3210 -7.1984 -0.9171 15 6 -1.2314 -7.1624 -1.1301 16 7 -1.5609 -7.7498 -2.4493 17 6 -2.0798 -8.9897 -2.7109 18 1 -2.0537 -9.7572 -1.9515 19 6 -2.6394 -9.2601 -3.9521 20 7 -2.8223 -8.2858 -4.8179 21 14 -3.1329 -11.0068 -4.3935 22 1 -4.5742 -11.2044 -4.0952 23 1 -2.8905 -11.2391 -5.8401 24 1 -2.3265 -11.9656 -3.5963 25 6 -1.2028 -6.6694 -3.4419 26 6 0.1115 -6.0898 -2.8780 27 6 1.3428 -6.6752 -3.5723 28 6 0.0677 -4.5563 -2.9768 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6966 2.1378 0.0008 33 1 4.1582 2.0755 -0.0001 34 1 4.1586 -2.0748 0.0076 35 1 0.5785 -2.4247 0.5895 36 1 2.1324 -3.2786 0.4332 37 1 0.7058 -5.0212 0.1961 38 1 -0.9824 -4.8112 -0.3489 39 1 2.2224 -6.6251 -1.1332 40 1 1.2620 -7.3929 0.1539 41 1 1.3542 -8.1449 -1.4568 42 1 -1.0939 -7.9488 -0.3880 43 1 -2.0153 -6.4739 -0.8145 44 1 -3.2130 -8.4749 -5.6855 45 1 -1.9745 -5.9003 -3.4733 46 1 -1.0389 -7.0848 -4.4364 47 1 2.2450 -6.2650 -3.1188 48 1 1.3193 -6.4181 -4.6314 49 1 1.3411 -7.7596 -3.4616 50 1 0.7575 -4.2112 -3.7469 51 1 -0.9450 -4.2251 -3.2065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982298588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:37 Heat of formation + Delta-G solvation = 9.521025 kcal Electronic energy + Delta-G solvation = -31011.708509 eV Core-core repulsion = 27103.730644 eV Total energy + Delta-G solvation = -3907.977866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91533 -41.20863 -39.65218 -36.47108 -35.34321 -34.46786 -33.53339 -33.03598 -32.25704 -29.81738 -28.80688 -28.35598 -27.02056 -26.79774 -26.41205 -24.03286 -23.51647 -22.58817 -21.80737 -20.30104 -19.25498 -18.61588 -18.01437 -17.75271 -17.31628 -16.88402 -16.54794 -16.48305 -15.98489 -15.66870 -15.50892 -15.12332 -14.94668 -14.73819 -14.62334 -14.26529 -13.90367 -13.73991 -13.69678 -13.67202 -13.53292 -13.37242 -13.23905 -13.12584 -13.11348 -12.83914 -12.69899 -12.50414 -12.39852 -12.27775 -12.05539 -11.88158 -11.68485 -11.40245 -11.28450 -11.17140 -10.94006 -10.69360 -10.39134 -10.31101 -9.88511 -9.68210 -8.81109 -7.85908 -5.20027 0.16951 0.34673 1.47485 1.48458 1.57420 1.61089 1.99500 2.51498 2.87075 3.34558 3.37880 3.49254 3.51322 3.70482 3.79147 3.82595 3.91945 3.96416 4.02300 4.04571 4.20734 4.24740 4.32753 4.44716 4.48186 4.48767 4.59570 4.62763 4.71498 4.73191 4.75013 4.85469 4.86798 4.90913 4.94908 4.96803 5.02986 5.06580 5.11382 5.19462 5.20485 5.23482 5.33651 5.40246 5.42905 5.47908 5.55037 5.63772 5.77009 5.82719 6.20629 6.59561 7.02493 7.05889 7.14200 7.73216 8.53229 9.27806 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002442 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.341813 B =11464.308450 C =11615.089204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.177 4.177 4 C 0.085 3.915 5 N -0.518 5.518 6 C 0.097 3.903 7 C -0.129 4.129 8 C -0.086 4.086 9 C 0.531 3.469 10 O -0.584 6.584 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.073 4.073 14 C -0.117 4.117 15 C 0.139 3.861 16 N -0.619 5.619 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.970 3.030 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.178 3.822 26 C -0.081 4.081 27 C -0.110 4.110 28 C 0.123 3.877 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.159 0.841 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.246 0.754 45 H 0.002 0.998 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 14.561 15.387 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.197 4.197 4 C -0.071 4.071 5 N -0.228 5.228 6 C -0.059 4.059 7 C -0.131 4.131 8 C -0.126 4.126 9 C 0.322 3.678 10 O -0.464 6.464 11 N -0.341 5.341 12 C -0.010 4.010 13 C -0.075 4.075 14 C -0.174 4.174 15 C 0.013 3.987 16 N -0.343 5.343 17 C -0.355 4.355 18 H 0.098 0.902 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.799 3.201 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.192 1.192 25 C 0.053 3.947 26 C -0.083 4.083 27 C -0.168 4.168 28 C -0.001 4.001 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.828 14.877 14.780 23.601 hybrid contribution -1.704 -0.964 -1.280 2.339 sum 9.123 13.913 13.500 21.425 Atomic orbital electron populations 1.20882 0.89190 1.03342 1.03893 1.20521 0.97753 0.92776 0.93696 1.22308 0.95538 0.99400 1.02409 1.23177 0.92555 0.96576 0.94743 1.67668 1.42085 0.99296 1.13720 1.22876 0.91454 0.96719 0.94852 1.20352 0.94929 0.95080 1.02744 1.20630 1.03762 0.95537 0.92636 1.20731 0.76168 0.78908 0.92043 1.90712 1.55559 1.51916 1.48201 1.48631 1.55997 1.20713 1.08798 1.22420 1.01468 0.85387 0.91682 1.22236 0.97035 0.95074 0.93161 1.21638 0.95167 0.99004 1.01581 1.21889 0.93057 0.95576 0.88174 1.45854 1.73924 1.12819 1.01719 1.19331 1.29764 0.87678 0.98722 0.90163 1.25614 1.00984 1.00940 0.98205 1.70073 1.50122 1.31525 1.07907 0.85188 0.77827 0.80338 0.76735 1.21653 1.22528 1.19198 1.21910 0.90154 0.88590 0.94025 1.22250 0.96924 0.92701 0.96436 1.21537 0.95944 1.00343 0.98929 1.21951 0.99100 0.92856 0.86169 0.88090 0.90277 0.92447 0.82384 0.80630 0.81912 0.85268 0.84780 0.86602 0.90331 0.91712 0.90311 0.93886 0.92228 0.95565 0.94507 0.98010 0.93164 0.91497 0.93946 0.93212 0.91846 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.31 71.24 0.66 -1.08 16 2 C -0.04 -0.75 5.92 -19.67 -0.12 -0.87 16 3 C -0.18 -3.03 9.82 22.36 0.22 -2.81 16 4 C 0.09 1.62 11.18 84.67 0.95 2.57 16 5 N -0.52 -12.27 10.36 -195.84 -2.03 -14.30 16 6 C 0.10 2.12 10.84 84.69 0.92 3.04 16 7 C -0.13 -2.59 4.39 -19.78 -0.09 -2.68 16 8 C -0.09 -1.40 4.16 29.10 0.12 -1.28 16 9 C 0.53 13.62 7.20 87.66 0.63 14.25 16 10 O -0.58 -20.43 16.27 -3.03 -0.05 -20.48 16 11 N -0.61 -15.72 3.32 -815.34 -2.71 -18.43 16 12 C 0.11 2.37 6.04 86.50 0.52 2.89 16 13 C -0.07 -2.04 1.07 -50.77 -0.05 -2.10 16 14 C -0.12 -2.74 7.42 71.98 0.53 -2.21 16 15 C 0.14 4.93 6.45 86.52 0.56 5.49 16 16 N -0.62 -29.47 3.43 -680.79 -2.34 -31.80 16 17 C -0.23 -11.99 10.36 84.03 0.87 -11.12 16 18 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 19 C -0.06 -3.53 5.42 84.86 0.46 -3.07 16 20 N -0.95 -55.88 10.86 21.65 0.24 -55.64 16 21 Si 0.97 44.69 29.56 68.60 2.03 46.72 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.18 8.23 5.21 85.94 0.45 8.68 16 26 C -0.08 -2.77 1.05 -50.78 -0.05 -2.83 16 27 C -0.11 -3.63 7.43 71.98 0.53 -3.10 16 28 C 0.12 3.99 6.20 86.49 0.54 4.53 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.07 8.10 -2.38 -0.02 1.05 16 31 H 0.06 1.03 6.36 -2.39 -0.02 1.02 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.13 1.48 7.10 -2.38 -0.02 1.46 16 36 H 0.13 1.41 7.78 -2.38 -0.02 1.39 16 37 H 0.12 1.51 6.97 -2.39 -0.02 1.50 16 38 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 39 H 0.06 1.35 7.12 -2.39 -0.02 1.33 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.23 7.13 -2.39 -0.02 1.21 16 42 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 43 H 0.03 0.93 7.23 -2.38 -0.02 0.92 16 44 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 45 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 46 H 0.05 2.69 6.37 -2.38 -0.02 2.68 16 47 H 0.07 1.88 7.06 -2.39 -0.02 1.87 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.78 7.19 -2.39 -0.02 1.76 16 50 H 0.06 2.19 7.61 -2.39 -0.02 2.17 16 51 H 0.05 1.93 7.11 -2.39 -0.02 1.91 16 Total: -1.00 -73.98 394.76 3.72 -70.26 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.92 Total: 15.35 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.65 Total: 8.33 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.84 Total: -120.17 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.98 3.72 -70.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982298588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.779 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds