Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.75758 * 2 1 4 4 C 1.38554 * 119.35217 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.54799 * 180.02562 * 4 3 2 6 6 N 1.31523 * 120.90589 * 359.74314 * 4 3 2 7 7 C 1.32716 * 121.64018 * 0.52456 * 6 4 3 8 8 C 1.48168 * 119.72283 * 179.74987 * 7 6 4 9 9 O 1.21518 * 120.00022 * 186.22016 * 8 7 6 10 10 N 1.34775 * 119.99860 * 6.22555 * 8 7 6 11 11 C 1.48111 * 127.84210 * 185.41472 * 10 8 7 12 12 C 1.56811 * 104.74543 * 220.29211 * 11 10 8 13 13 C 1.53000 * 112.93297 * 96.96880 * 12 11 10 14 14 C 1.54059 * 109.11305 * 223.63216 * 12 11 10 15 15 N 1.47192 * 106.25641 * 129.74294 * 14 12 11 16 16 C 1.36940 * 126.70305 * 148.61574 * 15 14 12 17 17 H 1.08000 * 119.99812 * 346.85756 * 16 15 14 18 18 C 1.38809 * 120.00422 * 166.85340 * 16 15 14 19 19 N 1.31621 * 120.00073 * 349.53149 * 18 16 15 20 20 Si 1.86801 * 120.00151 * 169.52102 * 18 16 15 21 21 H 1.48496 * 109.47052 * 90.00423 * 20 18 16 22 22 H 1.48505 * 109.47259 * 210.00298 * 20 18 16 23 23 H 1.48497 * 109.47114 * 330.00256 * 20 18 16 24 24 C 1.47197 * 106.59662 * 328.34847 * 15 14 12 25 25 C 1.53760 * 106.40656 * 31.57009 * 24 15 14 26 26 C 1.53005 * 112.06630 * 103.41823 * 25 24 15 27 27 C 1.48112 * 127.84685 * 5.41205 * 10 8 7 28 28 C 1.38590 * 120.75437 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47417 * 270.01961 * 1 2 3 30 30 H 1.08995 * 109.47126 * 30.02486 * 1 2 3 31 31 H 1.09007 * 109.46911 * 150.02446 * 1 2 3 32 32 H 1.08004 * 120.31986 * 359.95765 * 3 2 1 33 33 H 1.08994 * 109.47344 * 90.00059 * 5 4 3 34 34 H 1.08998 * 109.47098 * 210.00234 * 5 4 3 35 35 H 1.09003 * 109.47061 * 330.00178 * 5 4 3 36 36 H 1.08998 * 110.39593 * 338.58869 * 11 10 8 37 37 H 1.09001 * 110.39266 * 100.85818 * 11 10 8 38 38 H 1.08994 * 109.47181 * 303.35538 * 13 12 11 39 39 H 1.09004 * 109.46970 * 63.35204 * 13 12 11 40 40 H 1.08995 * 109.47534 * 183.34926 * 13 12 11 41 41 H 1.09006 * 110.20546 * 10.51344 * 14 12 11 42 42 H 1.09008 * 110.07330 * 248.89779 * 14 12 11 43 43 H 0.96994 * 120.00450 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.07212 * 150.80647 * 24 15 14 45 45 H 1.09003 * 110.07443 * 272.33527 * 24 15 14 46 46 H 1.08998 * 109.47063 * 61.01353 * 26 25 24 47 47 H 1.08994 * 109.47099 * 181.01699 * 26 25 24 48 48 H 1.09004 * 109.46693 * 301.01579 * 26 25 24 49 49 H 1.09000 * 110.38584 * 21.41026 * 27 10 8 50 50 H 1.09004 * 110.38920 * 259.02840 * 27 10 8 51 51 H 1.08001 * 120.47390 * 0.05137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0011 6 7 4.2487 0.0126 0.0061 7 6 3.6082 -1.1498 0.0011 8 6 4.3806 -2.4142 0.0021 9 8 3.8051 -3.4779 -0.1165 10 7 5.7215 -2.3846 0.1346 11 6 6.6683 -3.5204 0.0491 12 6 7.7142 -3.2546 1.1869 13 6 7.4043 -4.0233 2.4730 14 6 9.1298 -3.5299 0.6450 15 7 9.9390 -2.3491 0.9879 16 6 11.2791 -2.3288 1.2690 17 1 11.8046 -3.2526 1.4607 18 6 11.9621 -1.1210 1.3075 19 7 11.3803 -0.0219 0.8761 20 14 13.7067 -1.0552 1.9718 21 1 14.6677 -1.2787 0.8620 22 1 13.9547 0.2764 2.5807 23 1 13.8846 -2.1109 3.0009 24 6 9.0278 -1.1933 0.9631 25 6 7.6479 -1.7189 1.3921 26 6 7.3134 -1.3430 2.8370 27 6 6.5828 -1.2091 0.3988 28 6 2.2157 -1.1910 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6936 2.1366 -0.0007 33 1 4.5627 2.7610 1.0289 34 1 5.3265 2.3036 -0.5124 35 1 3.8000 3.2191 -0.5127 36 1 6.1501 -4.4615 0.2330 37 1 7.1522 -3.5388 -0.9274 38 1 6.4006 -3.7704 2.8145 39 1 7.4630 -5.0944 2.2792 40 1 8.1285 -3.7529 3.2414 41 1 9.0999 -3.6617 -0.4366 42 1 9.5457 -4.4189 1.1193 43 1 11.8573 0.8222 0.9033 44 1 9.3715 -0.4309 1.6622 45 1 8.9741 -0.7807 -0.0443 46 1 7.2925 -0.2576 2.9345 47 1 6.3379 -1.7505 3.1019 48 1 8.0718 -1.7531 3.5040 49 1 5.9999 -0.4043 0.8468 50 1 7.0550 -0.8694 -0.5231 51 1 1.6959 -2.1377 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982332774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = 34.059463 kcal Electronic energy + Delta-G solvation = -31426.965828 eV Core-core repulsion = 27520.052029 eV Total energy + Delta-G solvation = -3906.913799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.92048 -39.90733 -38.23887 -35.07525 -34.38563 -33.07558 -32.53209 -31.47551 -30.53275 -28.26926 -27.83642 -27.34848 -25.98044 -25.49799 -24.92578 -23.86109 -21.94716 -21.39055 -20.10030 -19.43168 -17.86669 -17.31132 -16.62445 -16.35061 -16.09341 -15.62323 -15.37273 -14.83602 -14.52151 -14.34295 -14.09442 -13.81740 -13.59856 -13.45557 -13.28869 -13.20842 -12.99405 -12.84569 -12.55926 -12.38799 -12.28364 -12.16361 -11.92289 -11.83393 -11.73710 -11.64507 -11.25334 -11.12883 -10.80930 -10.70811 -10.51032 -10.31563 -10.04014 -9.87920 -9.83049 -9.73964 -9.66614 -9.53521 -9.19646 -9.15316 -8.58844 -8.38022 -6.79942 -5.75705 -3.07731 0.54645 1.00289 2.74774 3.05883 3.39498 3.45610 3.47149 3.73135 3.96326 4.32458 4.42718 4.49697 4.76111 4.83302 4.89171 4.98677 5.07605 5.16260 5.19298 5.29647 5.36448 5.46407 5.47944 5.51724 5.54162 5.62585 5.67695 5.72905 5.77909 5.82644 5.91322 5.93414 5.98190 6.01572 6.15523 6.16220 6.29244 6.34296 6.37651 6.39908 6.52746 6.55977 6.59269 6.71163 6.81394 6.89958 7.02576 7.44599 7.59583 7.64317 7.77441 7.79559 8.26512 8.27268 9.18357 9.80575 10.53162 11.37982 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.003154 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.926000 B = 8876.437454 C =10049.396009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.156 4.156 4 C 0.130 3.870 5 C -0.106 4.106 6 N -0.452 5.452 7 C 0.098 3.902 8 C 0.585 3.415 9 O -0.548 6.548 10 N -0.594 5.594 11 C 0.113 3.887 12 C -0.079 4.079 13 C -0.119 4.119 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.227 4.227 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.180 3.820 25 C -0.097 4.097 26 C -0.117 4.117 27 C 0.114 3.886 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.078 0.922 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.074 0.926 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.298 3.191 -0.365 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.056 4.056 3 C -0.176 4.176 4 C -0.010 4.010 5 C -0.164 4.164 6 N -0.165 5.165 7 C -0.040 4.040 8 C 0.372 3.628 9 O -0.426 6.426 10 N -0.324 5.324 11 C -0.009 4.009 12 C -0.081 4.081 13 C -0.176 4.176 14 C 0.017 3.983 15 N -0.316 5.316 16 C -0.355 4.355 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.561 5.561 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.054 3.946 25 C -0.100 4.100 26 C -0.174 4.174 27 C -0.008 4.008 28 C -0.145 4.145 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.121 0.879 50 H 0.092 0.908 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.582 2.755 -0.417 19.779 hybrid contribution 0.069 0.166 0.177 0.252 sum -19.513 2.922 -0.241 19.732 Atomic orbital electron populations 1.20823 0.89770 1.03501 1.03056 1.20315 0.97000 0.92540 0.95730 1.22047 0.94835 0.98768 1.01990 1.21428 0.91146 0.94077 0.94331 1.20766 1.00677 0.91360 1.03560 1.67697 1.40055 0.97529 1.11233 1.21106 0.91439 0.92068 0.99391 1.17434 0.80600 0.87258 0.77481 1.90756 1.69184 1.30416 1.52241 1.48818 1.04378 1.11911 1.67341 1.23049 0.89413 0.89681 0.98751 1.22748 0.95634 0.95436 0.94329 1.21587 1.00866 0.98616 0.96532 1.21423 0.88610 0.92006 0.96279 1.44464 1.04735 1.01891 1.80559 1.18982 0.82695 0.93342 1.40464 0.90700 1.24817 0.98060 0.96067 1.01264 1.69934 1.37018 0.98715 1.50459 0.86185 0.84377 0.76906 0.78670 1.21599 1.21636 1.20685 1.21256 0.83549 0.90739 0.99028 1.22582 0.98062 0.94314 0.94999 1.21614 1.00033 1.00448 0.95326 1.22995 0.90683 0.88185 0.98917 1.21946 0.93717 0.99443 0.99365 0.90356 0.90878 0.90777 0.84507 0.90015 0.89758 0.90667 0.90495 0.90536 0.93244 0.93212 0.91706 0.96193 0.93793 0.93708 0.90378 0.95813 0.93075 0.94001 0.92041 0.87892 0.90821 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.06 36.01 0.36 -0.34 16 2 C -0.05 -0.46 5.91 -104.35 -0.62 -1.08 16 3 C -0.16 -1.43 9.45 -39.32 -0.37 -1.80 16 4 C 0.13 1.45 6.78 -82.61 -0.56 0.89 16 5 C -0.11 -0.92 10.17 36.01 0.37 -0.55 16 6 N -0.45 -6.33 6.73 -6.06 -0.04 -6.37 16 7 C 0.10 1.45 6.70 -83.01 -0.56 0.89 16 8 C 0.58 9.98 7.89 -12.18 -0.10 9.89 16 9 O -0.55 -10.37 16.59 5.35 0.09 -10.28 16 10 N -0.59 -10.06 3.31 -168.85 -0.56 -10.62 16 11 C 0.11 1.90 6.32 -1.10 -0.01 1.89 16 12 C -0.08 -1.40 1.14 -150.80 -0.17 -1.57 16 13 C -0.12 -1.89 7.61 37.16 0.28 -1.61 16 14 C 0.14 2.95 6.50 -3.11 -0.02 2.93 16 15 N -0.59 -14.70 3.38 -170.99 -0.58 -15.27 16 16 C -0.23 -6.17 10.28 -15.06 -0.15 -6.32 16 17 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 18 C -0.01 -0.14 5.37 -17.43 -0.09 -0.24 16 19 N -0.91 -26.16 10.84 55.49 0.60 -25.56 16 20 Si 0.91 21.72 29.57 -169.99 -5.03 16.69 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.18 4.17 4.85 -3.27 -0.02 4.15 16 25 C -0.10 -1.79 1.07 -152.33 -0.16 -1.95 16 26 C -0.12 -2.00 7.42 37.16 0.28 -1.72 16 27 C 0.11 1.95 5.45 -2.47 -0.01 1.94 16 28 C -0.12 -1.51 9.34 -39.05 -0.36 -1.88 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.08 1.25 7.65 -51.93 -0.40 0.86 16 37 H 0.08 1.27 7.24 -51.93 -0.38 0.90 16 38 H 0.05 0.76 7.16 -51.93 -0.37 0.39 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.09 7.09 -51.93 -0.37 0.72 16 41 H 0.02 0.42 7.16 -51.93 -0.37 0.05 16 42 H 0.04 0.88 7.88 -51.92 -0.41 0.47 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.08 2.02 6.42 -51.93 -0.33 1.69 16 45 H 0.02 0.60 7.10 -51.93 -0.37 0.23 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.66 7.16 -51.93 -0.37 0.29 16 48 H 0.06 1.11 7.10 -51.93 -0.37 0.74 16 49 H 0.10 1.69 5.40 -51.93 -0.28 1.41 16 50 H 0.07 1.33 7.15 -51.93 -0.37 0.96 16 51 H 0.15 1.69 7.66 -52.49 -0.40 1.29 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -31.66 395.43 -9.61 -41.27 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.13 Total: 0.68 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.92 Total: 3.51 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.58 Total: -57.82 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.66 -9.61 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982332774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.325 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds