Wall clock time and date at job start Wed Apr 1 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.75758 * 2 1 4 4 C 1.38554 * 119.35217 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.54799 * 180.02562 * 4 3 2 6 6 N 1.31523 * 120.90589 * 359.74314 * 4 3 2 7 7 C 1.32716 * 121.64018 * 0.52456 * 6 4 3 8 8 C 1.48168 * 119.72283 * 179.74987 * 7 6 4 9 9 O 1.21518 * 120.00022 * 186.22016 * 8 7 6 10 10 N 1.34775 * 119.99860 * 6.22555 * 8 7 6 11 11 C 1.48111 * 127.84210 * 185.41472 * 10 8 7 12 12 C 1.56811 * 104.74543 * 220.29211 * 11 10 8 13 13 C 1.53000 * 112.93297 * 96.96880 * 12 11 10 14 14 C 1.54059 * 109.11305 * 223.63216 * 12 11 10 15 15 N 1.47192 * 106.25641 * 129.74294 * 14 12 11 16 16 C 1.36940 * 126.70305 * 148.61574 * 15 14 12 17 17 H 1.08000 * 119.99812 * 346.85756 * 16 15 14 18 18 C 1.38809 * 120.00422 * 166.85340 * 16 15 14 19 19 N 1.31621 * 120.00073 * 349.53149 * 18 16 15 20 20 Si 1.86801 * 120.00151 * 169.52102 * 18 16 15 21 21 H 1.48496 * 109.47052 * 90.00423 * 20 18 16 22 22 H 1.48505 * 109.47259 * 210.00298 * 20 18 16 23 23 H 1.48497 * 109.47114 * 330.00256 * 20 18 16 24 24 C 1.47197 * 106.59662 * 328.34847 * 15 14 12 25 25 C 1.53760 * 106.40656 * 31.57009 * 24 15 14 26 26 C 1.53005 * 112.06630 * 103.41823 * 25 24 15 27 27 C 1.48112 * 127.84685 * 5.41205 * 10 8 7 28 28 C 1.38590 * 120.75437 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47417 * 270.01961 * 1 2 3 30 30 H 1.08995 * 109.47126 * 30.02486 * 1 2 3 31 31 H 1.09007 * 109.46911 * 150.02446 * 1 2 3 32 32 H 1.08004 * 120.31986 * 359.95765 * 3 2 1 33 33 H 1.08994 * 109.47344 * 90.00059 * 5 4 3 34 34 H 1.08998 * 109.47098 * 210.00234 * 5 4 3 35 35 H 1.09003 * 109.47061 * 330.00178 * 5 4 3 36 36 H 1.08998 * 110.39593 * 338.58869 * 11 10 8 37 37 H 1.09001 * 110.39266 * 100.85818 * 11 10 8 38 38 H 1.08994 * 109.47181 * 303.35538 * 13 12 11 39 39 H 1.09004 * 109.46970 * 63.35204 * 13 12 11 40 40 H 1.08995 * 109.47534 * 183.34926 * 13 12 11 41 41 H 1.09006 * 110.20546 * 10.51344 * 14 12 11 42 42 H 1.09008 * 110.07330 * 248.89779 * 14 12 11 43 43 H 0.96994 * 120.00450 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.07212 * 150.80647 * 24 15 14 45 45 H 1.09003 * 110.07443 * 272.33527 * 24 15 14 46 46 H 1.08998 * 109.47063 * 61.01353 * 26 25 24 47 47 H 1.08994 * 109.47099 * 181.01699 * 26 25 24 48 48 H 1.09004 * 109.46693 * 301.01579 * 26 25 24 49 49 H 1.09000 * 110.38584 * 21.41026 * 27 10 8 50 50 H 1.09004 * 110.38920 * 259.02840 * 27 10 8 51 51 H 1.08001 * 120.47390 * 0.05137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0011 6 7 4.2487 0.0126 0.0061 7 6 3.6082 -1.1498 0.0011 8 6 4.3806 -2.4142 0.0021 9 8 3.8051 -3.4779 -0.1165 10 7 5.7215 -2.3846 0.1346 11 6 6.6683 -3.5204 0.0491 12 6 7.7142 -3.2546 1.1869 13 6 7.4043 -4.0233 2.4730 14 6 9.1298 -3.5299 0.6450 15 7 9.9390 -2.3491 0.9879 16 6 11.2791 -2.3288 1.2690 17 1 11.8046 -3.2526 1.4607 18 6 11.9621 -1.1210 1.3075 19 7 11.3803 -0.0219 0.8761 20 14 13.7067 -1.0552 1.9718 21 1 14.6677 -1.2787 0.8620 22 1 13.9547 0.2764 2.5807 23 1 13.8846 -2.1109 3.0009 24 6 9.0278 -1.1933 0.9631 25 6 7.6479 -1.7189 1.3921 26 6 7.3134 -1.3430 2.8370 27 6 6.5828 -1.2091 0.3988 28 6 2.2157 -1.1910 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6936 2.1366 -0.0007 33 1 4.5627 2.7610 1.0289 34 1 5.3265 2.3036 -0.5124 35 1 3.8000 3.2191 -0.5127 36 1 6.1501 -4.4615 0.2330 37 1 7.1522 -3.5388 -0.9274 38 1 6.4006 -3.7704 2.8145 39 1 7.4630 -5.0944 2.2792 40 1 8.1285 -3.7529 3.2414 41 1 9.0999 -3.6617 -0.4366 42 1 9.5457 -4.4189 1.1193 43 1 11.8573 0.8222 0.9033 44 1 9.3715 -0.4309 1.6622 45 1 8.9741 -0.7807 -0.0443 46 1 7.2925 -0.2576 2.9345 47 1 6.3379 -1.7505 3.1019 48 1 8.0718 -1.7531 3.5040 49 1 5.9999 -0.4043 0.8468 50 1 7.0550 -0.8694 -0.5231 51 1 1.6959 -2.1377 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982332774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:49 Heat of formation + Delta-G solvation = 16.640794 kcal Electronic energy + Delta-G solvation = -31427.721158 eV Core-core repulsion = 27520.052029 eV Total energy + Delta-G solvation = -3907.669129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06058 -41.16737 -39.59645 -36.68884 -35.26180 -34.48805 -33.69827 -33.01017 -32.34349 -29.08770 -28.91026 -28.35568 -27.62517 -26.94881 -26.59786 -25.10089 -23.52483 -22.21121 -21.73033 -20.68141 -19.41525 -18.70661 -18.27450 -17.36039 -17.10079 -16.85309 -16.69224 -16.52534 -15.95858 -15.82988 -15.27640 -15.14027 -14.80269 -14.71499 -14.65827 -14.12145 -14.04017 -13.79049 -13.71993 -13.50067 -13.43243 -13.30594 -13.19843 -13.09998 -13.06622 -12.98838 -12.68948 -12.62206 -12.50942 -12.36805 -12.11629 -11.92274 -11.76632 -11.51783 -11.40597 -11.25138 -11.13431 -10.65842 -10.49985 -10.28349 -10.07978 -9.73845 -8.82783 -7.85770 -5.19837 -0.38895 0.19140 1.48278 1.49153 1.58468 1.60719 1.79599 2.51820 2.75748 2.94592 3.32781 3.38052 3.47203 3.61075 3.67286 3.89523 3.93903 3.99986 4.03253 4.15018 4.23369 4.29717 4.31429 4.41451 4.50148 4.62356 4.62880 4.71400 4.75255 4.76581 4.79920 4.84178 4.88113 4.89437 4.93047 4.98113 5.00386 5.04260 5.12694 5.18375 5.19811 5.27789 5.28404 5.29740 5.37960 5.47330 5.53761 5.62149 5.70087 5.78424 6.24583 6.42223 6.69245 7.02716 7.10241 7.77393 8.50023 9.26982 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.003154 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.926000 B = 8876.437454 C =10049.396009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.116 3.884 5 C -0.104 4.104 6 N -0.480 5.480 7 C 0.067 3.933 8 C 0.583 3.417 9 O -0.572 6.572 10 N -0.596 5.596 11 C 0.117 3.883 12 C -0.071 4.071 13 C -0.111 4.111 14 C 0.141 3.859 15 N -0.614 5.614 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.973 3.027 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.194 3.806 25 C -0.090 4.090 26 C -0.108 4.108 27 C 0.130 3.870 28 C -0.129 4.129 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.177 0.823 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.051 0.949 43 H 0.248 0.752 44 H 0.046 0.954 45 H -0.006 1.006 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.113 0.887 50 H 0.056 0.944 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.708 3.822 0.366 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.052 4.052 3 C -0.160 4.160 4 C -0.024 4.024 5 C -0.161 4.161 6 N -0.194 5.194 7 C -0.070 4.070 8 C 0.372 3.628 9 O -0.452 6.452 10 N -0.326 5.326 11 C -0.006 4.006 12 C -0.073 4.073 13 C -0.168 4.168 14 C 0.015 3.985 15 N -0.338 5.338 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.591 5.591 20 Si 0.802 3.198 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.196 1.196 24 C 0.068 3.932 25 C -0.093 4.093 26 C -0.165 4.165 27 C 0.008 3.992 28 C -0.150 4.150 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.194 0.806 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.012 0.988 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.130 0.870 50 H 0.075 0.925 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.009 3.354 0.313 22.266 hybrid contribution 0.749 0.016 -0.125 0.759 sum -21.260 3.370 0.188 21.527 Atomic orbital electron populations 1.20918 0.86953 1.04789 1.04231 1.20728 0.98855 0.91549 0.94063 1.22469 0.93973 1.00289 0.99277 1.21926 0.92594 0.93812 0.94088 1.20841 1.00066 0.91037 1.04194 1.67547 1.41201 0.98186 1.12442 1.20838 0.92138 0.91354 1.02635 1.17898 0.80348 0.88107 0.76426 1.90722 1.69502 1.31626 1.53354 1.48808 1.04606 1.11493 1.67700 1.22977 0.89259 0.90199 0.98160 1.22671 0.94127 0.94969 0.95532 1.21527 1.00937 0.99429 0.94955 1.21562 0.89763 0.90885 0.96275 1.44735 1.04700 1.03608 1.80719 1.19335 0.84034 0.93564 1.39908 0.90393 1.25603 1.01862 0.95824 1.01973 1.70122 1.38345 0.98954 1.51696 0.85167 0.79848 0.76755 0.78044 1.21443 1.21927 1.19581 1.20984 0.85788 0.89911 0.96516 1.22451 0.95641 0.94911 0.96253 1.21519 1.00448 1.00747 0.93775 1.22738 0.90254 0.88522 0.97730 1.22065 0.92838 1.00724 0.99399 0.89046 0.88687 0.90473 0.80593 0.89284 0.91619 0.87642 0.89610 0.90892 0.92412 0.91378 0.92580 0.96460 0.93053 0.94244 0.93579 0.98844 0.92736 0.92251 0.93126 0.86957 0.92543 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.06 71.24 0.72 -0.23 16 2 C -0.04 -0.72 5.91 -19.69 -0.12 -0.83 16 3 C -0.14 -2.09 9.45 22.44 0.21 -1.87 16 4 C 0.12 2.38 6.78 42.68 0.29 2.67 16 5 C -0.10 -1.61 10.17 71.24 0.72 -0.89 16 6 N -0.48 -13.29 6.73 -173.09 -1.16 -14.45 16 7 C 0.07 1.96 6.70 41.91 0.28 2.24 16 8 C 0.58 20.01 7.89 86.88 0.69 20.70 16 9 O -0.57 -21.72 16.59 -3.77 -0.06 -21.79 16 10 N -0.60 -20.36 3.31 -806.42 -2.67 -23.03 16 11 C 0.12 3.90 6.32 87.40 0.55 4.45 16 12 C -0.07 -2.50 1.14 -49.78 -0.06 -2.55 16 13 C -0.11 -3.40 7.61 71.98 0.55 -2.86 16 14 C 0.14 5.88 6.50 86.61 0.56 6.44 16 15 N -0.61 -31.35 3.38 -694.91 -2.35 -33.70 16 16 C -0.24 -13.32 10.28 84.03 0.86 -12.45 16 17 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 18 C -0.06 -3.30 5.37 84.86 0.46 -2.85 16 19 N -0.94 -55.90 10.84 21.65 0.23 -55.67 16 20 Si 0.97 45.37 29.57 68.60 2.03 47.39 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 C 0.19 9.40 4.85 86.50 0.42 9.82 16 25 C -0.09 -3.39 1.07 -50.77 -0.05 -3.45 16 26 C -0.11 -3.66 7.42 71.98 0.53 -3.13 16 27 C 0.13 4.55 5.45 86.51 0.47 5.03 16 28 C -0.13 -3.01 9.34 22.61 0.21 -2.80 16 29 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 31 H 0.08 0.64 8.10 -2.38 -0.02 0.62 16 32 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.09 2.73 7.65 -2.39 -0.02 2.71 16 37 H 0.07 2.48 7.24 -2.39 -0.02 2.46 16 38 H 0.06 1.68 7.16 -2.39 -0.02 1.66 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.82 7.09 -2.39 -0.02 1.80 16 41 H 0.02 0.74 7.16 -2.38 -0.02 0.73 16 42 H 0.05 2.04 7.88 -2.38 -0.02 2.02 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.05 2.51 6.42 -2.39 -0.02 2.49 16 45 H -0.01 -0.34 7.10 -2.39 -0.02 -0.35 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 1.81 7.16 -2.39 -0.02 1.79 16 48 H 0.05 1.82 7.10 -2.38 -0.02 1.81 16 49 H 0.11 3.76 5.40 -2.39 -0.01 3.74 16 50 H 0.06 2.16 7.15 -2.38 -0.02 2.15 16 51 H 0.14 3.28 7.66 -2.91 -0.02 3.25 16 Total: -1.00 -71.14 395.43 4.24 -66.90 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.92 Total: 16.91 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.30 Total: 17.42 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -5.95 Total: -126.85 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.14 4.24 -66.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982332774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.541 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds