Wall clock time and date at job start Wed Apr 1 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31888 * 119.61782 * 2 1 4 4 C 1.31848 * 121.72771 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76182 * 0.02562 * 4 3 2 6 6 C 1.38631 * 119.16166 * 359.71653 * 5 4 3 7 7 C 1.38173 * 119.61596 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.42059 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47394 * 84.99849 * 8 7 2 10 10 O 1.21280 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.47201 * 126.70723 * 0.03255 * 11 9 8 13 13 C 1.53757 * 106.40870 * 211.29750 * 12 11 9 14 14 C 1.53002 * 111.22215 * 102.94207 * 13 12 11 15 15 C 1.54315 * 109.99818 * 228.80584 * 13 12 11 16 16 N 1.48114 * 104.71202 * 136.65995 * 15 13 12 17 17 C 1.36934 * 127.84276 * 140.21586 * 16 15 13 18 18 H 1.07996 * 120.00277 * 343.75850 * 17 16 15 19 19 C 1.38814 * 119.99579 * 163.75420 * 17 16 15 20 20 N 1.31615 * 120.00276 * 351.59814 * 19 17 16 21 21 Si 1.86801 * 119.99741 * 171.60176 * 19 17 16 22 22 H 1.48501 * 109.47223 * 94.97736 * 21 19 17 23 23 H 1.48500 * 109.46964 * 214.98064 * 21 19 17 24 24 H 1.48498 * 109.47178 * 334.97971 * 21 19 17 25 25 C 1.51017 * 104.41710 * 319.90888 * 16 15 13 26 26 C 1.54317 * 103.32535 * 40.06209 * 25 16 15 27 27 C 1.53000 * 112.07775 * 98.20851 * 26 25 16 28 28 C 1.47211 * 126.70070 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47322 * 270.02339 * 1 2 3 30 30 H 1.09004 * 109.47218 * 30.01942 * 1 2 3 31 31 H 1.09004 * 109.47274 * 150.01611 * 1 2 3 32 32 H 1.07996 * 119.62210 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.42216 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.78804 * 180.27991 * 6 5 4 35 35 H 1.09007 * 109.47193 * 324.99403 * 8 7 2 36 36 H 1.09007 * 109.47209 * 205.00169 * 8 7 2 37 37 H 1.09000 * 110.06824 * 330.53575 * 12 11 9 38 38 H 1.08999 * 110.06531 * 92.00644 * 12 11 9 39 39 H 1.08999 * 109.46925 * 302.39113 * 14 13 12 40 40 H 1.09004 * 109.47214 * 62.39347 * 14 13 12 41 41 H 1.09001 * 109.47498 * 182.39030 * 14 13 12 42 42 H 1.09000 * 110.39319 * 255.47266 * 15 13 12 43 43 H 1.09006 * 110.38350 * 17.85747 * 15 13 12 44 44 H 0.97007 * 120.00157 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.84294 * 281.80971 * 25 16 15 46 46 H 1.09008 * 111.26349 * 158.51160 * 25 16 15 47 47 H 1.08992 * 109.47053 * 182.00864 * 27 26 25 48 48 H 1.09003 * 109.47155 * 62.00695 * 27 26 25 49 49 H 1.09002 * 109.47112 * 302.01123 * 27 26 25 50 50 H 1.08998 * 110.06780 * 29.46204 * 28 11 9 51 51 H 1.08997 * 110.10748 * 267.96602 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 0.0005 5 6 4.2266 0.0342 0.0005 6 6 3.5765 -1.1902 0.0060 7 6 2.1898 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0784 -2.8811 -1.4133 10 8 1.4016 -2.1586 -2.3322 11 7 0.3974 -4.0183 -1.6574 12 6 -0.0675 -4.9967 -0.6607 13 6 -0.0411 -6.3689 -1.3539 14 6 1.1715 -7.1900 -0.9107 15 6 -1.3795 -7.1019 -1.1245 16 7 -1.7207 -7.6835 -2.4433 17 6 -2.2648 -8.9127 -2.7039 18 1 -2.2547 -9.6799 -1.9439 19 6 -2.8295 -9.1727 -3.9450 20 7 -2.9922 -8.1956 -4.8117 21 14 -3.3587 -10.9093 -4.3851 22 1 -4.8037 -11.0770 -4.0869 23 1 -3.1207 -11.1477 -5.8314 24 1 -2.5722 -11.8837 -3.5868 25 6 -1.3403 -6.6116 -3.4367 26 6 -0.0145 -6.0585 -2.8730 27 6 1.2047 -6.6696 -3.5665 28 6 -0.0268 -4.5245 -2.9731 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 3.9753 2.1529 0.0001 33 1 5.3056 0.0803 0.0005 34 1 4.1367 -2.1136 0.0107 35 1 0.5266 -2.4008 0.5915 36 1 2.0628 -3.2865 0.4363 37 1 0.6008 -4.9997 0.2004 38 1 -1.0826 -4.7556 -0.3452 39 1 2.0846 -6.6354 -1.1272 40 1 1.1083 -7.3823 0.1604 41 1 1.1854 -8.1374 -1.4496 42 1 -1.2584 -7.8902 -0.3816 43 1 -2.1492 -6.3971 -0.8097 44 1 -3.3865 -8.3774 -5.6792 45 1 -2.0961 -5.8268 -3.4690 46 1 -1.1847 -7.0311 -4.4307 47 1 2.1150 -6.2776 -3.1130 48 1 1.1868 -6.4131 -4.6257 49 1 1.1808 -7.7536 -3.4548 50 1 0.6701 -4.1943 -3.7433 51 1 -1.0324 -4.1728 -3.2034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982553628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:09 Heat of formation + Delta-G solvation = 29.959343 kcal Electronic energy + Delta-G solvation = -31024.018623 eV Core-core repulsion = 27116.927029 eV Total energy + Delta-G solvation = -3907.091594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.86696 -40.21445 -38.45774 -34.94736 -33.96168 -33.14075 -32.80870 -31.80963 -30.56462 -29.18024 -27.68986 -26.99147 -25.74276 -25.45939 -24.89387 -22.96545 -22.27072 -21.73334 -20.31707 -19.19059 -17.88799 -17.11820 -16.99255 -16.65348 -16.48451 -15.65750 -15.45279 -14.85802 -14.69496 -14.36784 -14.33684 -14.15015 -13.53963 -13.38403 -13.32132 -13.30193 -13.22905 -12.67653 -12.59607 -12.45632 -12.27339 -12.21528 -11.98361 -11.80758 -11.77246 -11.56577 -11.33861 -11.24373 -10.87126 -10.78501 -10.58697 -10.20890 -9.99576 -9.98678 -9.93886 -9.84117 -9.64805 -9.61543 -9.54284 -8.92876 -8.72281 -8.49078 -6.88703 -5.82159 -3.16298 0.92134 1.13024 2.66647 3.07566 3.35239 3.41451 3.43002 3.64632 4.14539 4.39804 4.42540 4.54302 4.59884 4.71608 4.77143 4.79638 4.98456 5.08993 5.15852 5.20529 5.37512 5.39535 5.42338 5.45736 5.48874 5.50808 5.55542 5.57158 5.65147 5.67578 5.83549 5.90126 5.98719 5.99770 6.06849 6.07759 6.15686 6.23211 6.25629 6.28207 6.44074 6.47580 6.55076 6.62791 6.70999 6.77695 6.89785 7.22950 7.49093 7.67194 7.68461 7.84789 8.12204 8.22881 9.03628 9.70049 10.46757 11.32111 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.002443 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.340202 B =11459.945817 C =11607.223331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.113 4.113 8 C -0.096 4.096 9 C 0.530 3.470 10 O -0.539 6.539 11 N -0.612 5.612 12 C 0.108 3.892 13 C -0.081 4.081 14 C -0.122 4.122 15 C 0.142 3.858 16 N -0.595 5.595 17 C -0.224 4.224 18 H 0.075 0.925 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.171 3.829 26 C -0.089 4.089 27 C -0.118 4.118 28 C 0.116 3.884 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.024 0.976 44 H 0.254 0.746 45 H 0.027 0.973 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.061 12.022 12.190 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.137 4.137 9 C 0.318 3.682 10 O -0.417 6.417 11 N -0.345 5.345 12 C -0.015 4.015 13 C -0.084 4.084 14 C -0.179 4.179 15 C 0.015 3.985 16 N -0.319 5.319 17 C -0.353 4.353 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.046 3.954 26 C -0.091 4.091 27 C -0.176 4.176 28 C -0.006 4.006 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.664 13.116 11.525 20.998 hybrid contribution 0.209 -1.681 -0.300 1.721 sum 11.874 11.435 11.225 19.943 Atomic orbital electron populations 1.20763 0.89024 1.03902 1.02772 1.21065 0.96876 0.87686 0.93588 1.67516 1.10091 1.29090 1.12834 1.22698 0.89499 0.98398 0.95196 1.22057 1.01345 0.93374 1.03191 1.21439 0.93566 0.98601 0.95109 1.20103 0.94215 0.94935 1.02302 1.20614 1.02034 0.95441 0.95563 1.19991 0.77602 0.79886 0.90736 1.90727 1.54084 1.50550 1.46297 1.48635 1.54828 1.21338 1.09690 1.22347 0.99592 0.88193 0.91368 1.22308 0.97972 0.93343 0.94756 1.21667 0.95918 1.00251 1.00081 1.21674 0.91268 0.95235 0.90327 1.45583 1.72694 1.14376 0.99238 1.18964 1.30476 0.87013 0.98801 0.90720 1.24866 0.99824 0.97633 0.97864 1.69875 1.48551 1.29805 1.07857 0.86161 0.78395 0.83934 0.77596 1.21602 1.21639 1.20589 1.22168 0.87976 0.89798 0.95435 1.22468 0.99570 0.92308 0.94773 1.21623 0.95432 1.01311 0.99185 1.22265 1.00046 0.93667 0.84662 0.90285 0.90247 0.90789 0.82877 0.84863 0.84986 0.87596 0.87908 0.91069 0.90981 0.93308 0.93257 0.91525 0.93258 0.95834 0.93608 0.95478 0.89245 0.93866 0.93099 0.91669 0.90822 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.39 36.01 0.34 -0.79 16 2 C 0.15 1.81 6.78 -82.59 -0.56 1.25 16 3 N -0.49 -6.24 10.27 -9.48 -0.10 -6.34 16 4 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 5 C -0.18 -1.68 10.11 -39.44 -0.40 -2.08 16 6 C -0.06 -0.63 9.84 -39.28 -0.39 -1.02 16 7 C -0.11 -1.30 4.39 -104.49 -0.46 -1.76 16 8 C -0.10 -0.98 4.14 -29.04 -0.12 -1.10 16 9 C 0.53 7.48 7.10 -10.99 -0.08 7.40 16 10 O -0.54 -9.74 16.27 5.56 0.09 -9.65 16 11 N -0.61 -8.64 3.32 -171.64 -0.57 -9.21 16 12 C 0.11 1.35 6.04 -3.27 -0.02 1.33 16 13 C -0.08 -1.23 1.07 -152.33 -0.16 -1.40 16 14 C -0.12 -1.64 7.42 37.16 0.28 -1.37 16 15 C 0.14 2.63 6.45 -2.47 -0.02 2.61 16 16 N -0.60 -13.96 3.43 -166.53 -0.57 -14.53 16 17 C -0.22 -5.88 10.36 -15.06 -0.16 -6.03 16 18 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 19 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 20 N -0.91 -25.78 10.86 55.49 0.60 -25.17 16 21 Si 0.91 21.27 29.56 -169.99 -5.03 16.25 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 C 0.17 3.78 5.21 -0.81 0.00 3.78 16 26 C -0.09 -1.52 1.05 -152.35 -0.16 -1.68 16 27 C -0.12 -1.94 7.43 37.16 0.28 -1.66 16 28 C 0.12 1.89 6.20 -3.27 -0.02 1.87 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.81 6.15 -51.93 -0.32 0.49 16 32 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.11 0.88 7.01 -51.93 -0.36 0.52 16 36 H 0.10 0.83 7.78 -51.92 -0.40 0.42 16 37 H 0.07 0.70 6.97 -51.93 -0.36 0.33 16 38 H 0.07 0.88 7.18 -51.93 -0.37 0.51 16 39 H 0.05 0.61 7.12 -51.93 -0.37 0.24 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 42 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 43 H 0.02 0.44 7.23 -51.93 -0.38 0.06 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 46 H 0.09 2.25 6.37 -51.92 -0.33 1.92 16 47 H 0.04 0.64 7.06 -51.93 -0.37 0.27 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.06 1.15 7.19 -51.93 -0.37 0.78 16 50 H 0.07 1.25 7.61 -51.93 -0.40 0.85 16 51 H 0.07 1.20 7.11 -51.93 -0.37 0.84 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -32.25 394.53 -9.63 -41.88 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.06 Total: 0.88 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.94 Total: -0.05 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.64 Total: -55.26 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.25 -9.63 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982553628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.839 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds