Wall clock time and date at job start Wed Apr 1 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38153 * 119.54668 * 2 1 4 4 C 1.39816 * 118.99874 * 179.97438 * 3 2 1 5 5 C 1.48151 * 120.92538 * 179.97438 * 4 3 2 6 6 O 1.21515 * 120.00470 * 187.33250 * 5 4 3 7 7 N 1.34777 * 119.99635 * 7.33597 * 5 4 3 8 8 C 1.47324 * 125.73870 * 354.51469 * 7 5 4 9 9 C 1.55137 * 106.87162 * 179.91171 * 8 7 5 10 10 H 1.09000 * 112.80329 * 215.56501 * 9 8 7 11 11 C 1.52931 * 107.01021 * 92.02532 * 9 8 7 12 12 C 1.52257 * 110.24361 * 191.99745 * 11 9 8 13 13 C 1.51845 * 110.42843 * 61.74945 * 12 11 9 14 14 C 1.50772 * 112.95986 * 306.82602 * 13 12 11 15 15 H 1.09000 * 108.11845 * 164.31443 * 14 13 12 16 16 N 1.46505 * 108.12005 * 280.77577 * 14 13 12 17 17 C 1.36928 * 120.00206 * 281.67230 * 16 14 13 18 18 H 1.08003 * 120.00132 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00481 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99418 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00576 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46832 * 89.99768 * 21 19 17 23 23 H 1.48491 * 109.47213 * 210.00274 * 21 19 17 24 24 H 1.48504 * 109.46665 * 330.00179 * 21 19 17 25 25 C 1.49689 * 116.28026 * 42.54672 * 14 13 12 26 26 H 1.09003 * 109.18762 * 198.01337 * 25 14 13 27 27 C 1.47813 * 125.73997 * 174.82797 * 7 5 4 28 28 C 1.39820 * 118.15810 * 0.25481 * 4 3 2 29 29 C 1.38148 * 118.99762 * 359.52048 * 28 4 3 30 30 C 1.50697 * 119.55413 * 180.22503 * 29 28 4 31 31 N 1.31808 * 119.55619 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47002 * 90.00182 * 1 2 3 33 33 H 1.08999 * 109.46970 * 209.99898 * 1 2 3 34 34 H 1.08994 * 109.47435 * 329.99896 * 1 2 3 35 35 H 1.07997 * 120.50464 * 359.97438 * 3 2 1 36 36 H 1.08994 * 109.98212 * 299.38921 * 8 7 5 37 37 H 1.09002 * 109.98035 * 60.68813 * 8 7 5 38 38 H 1.08999 * 109.34097 * 71.76264 * 11 9 8 39 39 H 1.08998 * 109.34319 * 312.23332 * 11 9 8 40 40 H 1.08995 * 109.31267 * 301.45570 * 12 11 9 41 41 H 1.08999 * 109.30811 * 182.04416 * 12 11 9 42 42 H 1.09000 * 108.77839 * 185.92970 * 13 12 11 43 43 H 1.08996 * 108.69163 * 67.65940 * 13 12 11 44 44 H 0.97002 * 119.99712 * 101.66882 * 16 14 13 45 45 H 0.97007 * 120.00296 * 179.97438 * 20 19 17 46 46 H 1.08994 * 110.51290 * 322.97295 * 27 7 5 47 47 H 1.09009 * 110.51416 * 85.69430 * 27 7 5 48 48 H 1.07994 * 120.50339 * 179.72214 * 28 4 3 49 49 H 1.08994 * 109.47629 * 270.26090 * 30 29 28 50 50 H 1.09005 * 109.46938 * 30.26152 * 30 29 28 51 51 H 1.09008 * 109.47479 * 150.25493 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2019 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4521 0.0000 6 8 5.5674 2.4253 -0.1338 7 7 3.7243 3.6313 0.1480 8 6 2.2644 3.8207 0.2051 9 6 2.0143 5.3412 0.3843 10 1 1.1539 5.5560 1.0180 11 6 1.8558 5.9366 -1.0155 12 6 1.9025 7.4570 -0.9497 13 6 3.2443 7.9233 -0.4131 14 6 3.6080 7.2800 0.9010 15 1 4.6723 7.4399 1.0737 16 7 2.8731 7.9692 1.9646 17 6 3.3089 9.1842 2.4215 18 1 4.1947 9.6343 1.9981 19 6 2.6123 9.8376 3.4288 20 7 1.5331 9.2889 3.9451 21 14 3.2064 11.4955 4.0517 22 1 2.5763 12.5784 3.2545 23 1 2.8324 11.6505 5.4803 24 1 4.6830 11.5753 3.9151 25 6 3.3324 5.8135 1.0198 26 1 3.3277 5.5340 2.0733 27 6 4.3744 4.9527 0.2738 28 6 4.2344 -0.0505 -0.0044 29 6 3.4741 -1.2039 0.0005 30 6 4.1596 -2.5460 0.0004 31 7 2.1572 -1.1466 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.6492 2.1376 -0.0004 36 1 1.8071 3.4728 -0.7211 37 1 1.8508 3.2747 1.0531 38 1 0.9002 5.6226 -1.4352 39 1 2.6632 5.5779 -1.6538 40 1 1.1084 7.8140 -0.2940 41 1 1.7520 7.8658 -1.9488 42 1 3.2115 9.0044 -0.2776 43 1 4.0153 7.6852 -1.1458 44 1 2.0777 7.5649 2.3451 45 1 1.0464 9.7452 4.6493 46 1 5.2919 4.8730 0.8568 47 1 4.5816 5.3719 -0.7109 48 1 5.3130 -0.1050 -0.0087 49 1 4.3252 -2.8693 -1.0272 50 1 5.1173 -2.4648 0.5146 51 1 3.5321 -3.2746 0.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992717411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:52 Heat of formation + Delta-G solvation = 22.681737 kcal Electronic energy + Delta-G solvation = -30580.034166 eV Core-core repulsion = 26672.626991 eV Total energy + Delta-G solvation = -3907.407174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25758 -40.16679 -38.57257 -35.92441 -34.08690 -33.65131 -33.18973 -31.62029 -30.70875 -29.49264 -29.31276 -27.36135 -26.44443 -25.59781 -23.78295 -22.49676 -22.27688 -22.05740 -21.16630 -19.68622 -18.10418 -17.45126 -17.15405 -16.56116 -16.24557 -16.01805 -15.54758 -15.24101 -14.82926 -14.54369 -14.37805 -14.16622 -13.98131 -13.59495 -13.56122 -13.50991 -13.38505 -13.03467 -12.86699 -12.67061 -12.60278 -12.42119 -12.18766 -12.00713 -11.90020 -11.68343 -11.40265 -11.10188 -10.94513 -10.86895 -10.75525 -10.38281 -10.19392 -10.11556 -10.06700 -9.89251 -9.68562 -9.62849 -9.53656 -9.08369 -8.89186 -8.74050 -6.97672 -5.79523 -3.07517 0.50347 0.78735 2.67960 2.74340 3.41264 3.47305 3.48262 3.52888 3.85687 4.06926 4.33522 4.41859 4.53144 4.68268 4.73311 4.78198 4.82410 5.05782 5.12166 5.18051 5.20665 5.22670 5.25686 5.28773 5.32400 5.33894 5.45998 5.54465 5.60820 5.62529 5.67998 5.73207 5.73840 5.78991 5.80111 5.80583 5.86279 5.94300 6.03718 6.14354 6.24775 6.30993 6.34761 6.37988 6.45617 6.74568 6.75924 6.94343 7.10876 7.33117 7.67895 7.68038 7.93596 8.39166 9.50893 10.07413 10.42823 11.43136 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002468 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.300673 B =11342.659424 C =11529.137781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.128 3.872 3 C -0.181 4.181 4 C -0.074 4.074 5 C 0.571 3.429 6 O -0.533 6.533 7 N -0.605 5.605 8 C 0.089 3.911 9 C -0.090 4.090 10 H 0.103 0.897 11 C -0.110 4.110 12 C -0.109 4.109 13 C -0.127 4.127 14 C 0.189 3.811 15 H 0.043 0.957 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.090 4.090 26 H 0.085 0.915 27 C 0.115 3.885 28 C -0.124 4.124 29 C 0.126 3.874 30 C -0.103 4.103 31 N -0.474 5.474 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.170 0.830 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.382 0.618 45 H 0.254 0.746 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.146 0.854 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -19.546 -11.032 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.010 4.010 3 C -0.200 4.200 4 C -0.085 4.085 5 C 0.359 3.641 6 O -0.411 6.411 7 N -0.338 5.338 8 C -0.033 4.033 9 C -0.109 4.109 10 H 0.121 0.879 11 C -0.148 4.148 12 C -0.147 4.147 13 C -0.167 4.167 14 C 0.080 3.920 15 H 0.061 0.939 16 N -0.368 5.368 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.110 4.110 26 H 0.103 0.897 27 C -0.007 4.007 28 C -0.145 4.145 29 C -0.012 4.012 30 C -0.160 4.160 31 N -0.185 5.185 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.163 0.837 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.030 -20.227 -11.053 23.073 hybrid contribution 0.474 1.669 0.524 1.813 sum -0.556 -18.558 -10.529 21.344 Atomic orbital electron populations 1.20744 0.88249 1.03867 1.03329 1.21299 0.97201 0.87769 0.94689 1.23475 0.94216 1.01777 1.00541 1.20300 0.93848 0.93917 1.00391 1.17824 0.86720 0.82248 0.77271 1.90778 1.13727 1.86667 1.49905 1.48481 1.07825 1.06498 1.70977 1.22953 0.80879 0.98313 1.01175 1.22211 0.99411 0.91341 0.97934 0.87856 1.21459 1.01026 0.96915 0.95357 1.20979 0.99361 0.94166 1.00150 1.21471 0.95690 1.02177 0.97402 1.18896 0.96243 0.87718 0.89186 0.93913 1.42534 1.31640 1.21376 1.41200 1.19205 1.07703 0.95398 1.14351 0.91254 1.24700 0.97823 0.98852 0.99514 1.69649 1.19316 1.39099 1.30099 0.86237 0.77992 0.84276 0.77983 1.21808 1.21860 1.20820 1.21586 0.93069 0.96051 1.00273 0.89710 1.22398 0.96813 0.80568 1.00955 1.22067 1.02077 0.91169 0.99159 1.21246 0.89146 0.95695 0.95076 1.20722 0.99924 0.92072 1.03274 1.67203 1.09658 1.29788 1.11884 0.90185 0.90272 0.90281 0.81333 0.90332 0.90454 0.92327 0.92392 0.91370 0.93136 0.90976 0.94394 0.78405 0.93590 0.90137 0.90820 0.83653 0.90237 0.90436 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.01 0.37 -0.37 16 2 C 0.13 1.31 6.78 -82.63 -0.56 0.75 16 3 C -0.18 -1.88 8.33 -39.02 -0.33 -2.20 16 4 C -0.07 -0.92 5.91 -104.64 -0.62 -1.53 16 5 C 0.57 8.26 7.83 -12.19 -0.10 8.16 16 6 O -0.53 -9.31 16.78 5.35 0.09 -9.22 16 7 N -0.60 -7.92 3.34 -170.97 -0.57 -8.49 16 8 C 0.09 0.93 4.27 -2.46 -0.01 0.92 16 9 C -0.09 -1.11 3.51 -89.13 -0.31 -1.42 16 10 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 11 C -0.11 -1.30 4.71 -27.15 -0.13 -1.43 16 12 C -0.11 -1.56 5.90 -27.70 -0.16 -1.73 16 13 C -0.13 -2.10 5.38 -28.43 -0.15 -2.25 16 14 C 0.19 3.40 2.33 -70.68 -0.16 3.24 16 15 H 0.04 0.82 7.98 -51.93 -0.41 0.41 16 16 N -0.73 -16.66 5.00 -56.13 -0.28 -16.94 16 17 C -0.24 -6.19 9.40 -15.06 -0.14 -6.33 16 18 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 21 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.09 -1.35 2.18 -91.14 -0.20 -1.54 16 26 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 27 C 0.11 1.61 5.82 -2.60 -0.02 1.59 16 28 C -0.12 -1.43 9.31 -39.02 -0.36 -1.80 16 29 C 0.13 1.34 6.78 -82.63 -0.56 0.78 16 30 C -0.10 -0.74 10.16 36.00 0.37 -0.38 16 31 N -0.47 -5.39 10.16 -5.79 -0.06 -5.45 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 35 H 0.17 1.44 2.96 -52.73 -0.16 1.29 16 36 H 0.08 0.68 6.43 -51.93 -0.33 0.35 16 37 H 0.08 0.74 6.73 -51.93 -0.35 0.39 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.38 9.33 7.73 -40.82 -0.32 9.01 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 47 H 0.07 1.00 7.43 -51.92 -0.39 0.62 16 48 H 0.15 1.59 7.76 -52.49 -0.41 1.18 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 51 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -31.75 396.82 -10.46 -42.21 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.15 Total: 7.43 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -3.17 Total: -6.00 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.19 Total: -57.27 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.75 -10.46 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992717411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.892 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds