Wall clock time and date at job start Wed Apr 1 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38674 * 120.78917 * 2 1 4 4 C 1.38188 * 119.16181 * 180.31925 * 3 2 1 5 5 N 1.31881 * 120.76163 * 359.65824 * 4 3 2 6 6 C 1.31851 * 121.73062 * 0.02562 * 5 4 3 7 7 C 1.38221 * 120.76554 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.42468 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46622 * 264.99702 * 8 7 6 10 10 O 1.21279 * 120.00315 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99806 * 179.97438 * 9 8 7 12 12 C 1.48248 * 125.78335 * 0.02562 * 11 9 8 13 13 C 1.52329 * 105.86577 * 176.78357 * 12 11 9 14 14 H 1.08993 * 109.89121 * 272.32552 * 13 12 11 15 15 C 1.51449 * 117.44353 * 145.79345 * 13 12 11 16 16 C 1.53863 * 107.03112 * 181.60464 * 15 13 12 17 17 C 1.52529 * 112.02587 * 56.51924 * 16 15 13 18 18 C 1.53821 * 111.70016 * 306.20412 * 17 16 15 19 19 H 1.08997 * 109.94575 * 176.91318 * 18 17 16 20 20 N 1.46500 * 109.94367 * 298.15949 * 18 17 16 21 21 C 1.36932 * 120.00065 * 207.24222 * 20 18 17 22 22 H 1.07999 * 119.99930 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00050 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00087 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00121 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47304 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46967 * 119.99973 * 25 23 21 28 28 H 1.48497 * 109.47448 * 240.00282 * 25 23 21 29 29 C 1.51616 * 107.01827 * 57.53734 * 18 17 16 30 30 H 1.08999 * 110.50027 * 55.18872 * 29 18 17 31 31 C 1.48657 * 125.78558 * 179.71765 * 11 9 8 32 32 H 1.09006 * 109.47173 * 270.29088 * 1 2 3 33 33 H 1.09006 * 109.47423 * 30.28730 * 1 2 3 34 34 H 1.09001 * 109.47500 * 150.29157 * 1 2 3 35 35 H 1.07998 * 120.42124 * 359.97438 * 3 2 1 36 36 H 1.07993 * 119.61843 * 179.68115 * 4 3 2 37 37 H 1.08003 * 119.61950 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46993 * 24.99527 * 8 7 6 39 39 H 1.08997 * 109.47186 * 144.99772 * 8 7 6 40 40 H 1.08995 * 110.17097 * 295.88504 * 12 11 9 41 41 H 1.08999 * 110.16798 * 57.61228 * 12 11 9 42 42 H 1.09000 * 109.94326 * 300.63267 * 15 13 12 43 43 H 1.08997 * 109.93678 * 61.86696 * 15 13 12 44 44 H 1.09002 * 108.66155 * 295.98293 * 16 15 13 45 45 H 1.08996 * 109.00195 * 177.28173 * 16 15 13 46 46 H 1.08999 * 109.03925 * 185.63404 * 17 16 15 47 47 H 1.08999 * 108.97548 * 66.73447 * 17 16 15 48 48 H 0.96998 * 119.99616 * 27.24673 * 20 18 17 49 49 H 0.97006 * 120.00327 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.62637 * 274.13938 * 31 11 9 51 51 H 1.09001 * 110.63098 * 37.16004 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0067 5 7 4.2402 0.0001 -0.0063 6 6 3.5983 -1.1516 -0.0001 7 6 2.2167 -1.1909 0.0058 8 6 1.4908 -2.5116 0.0124 9 6 1.1344 -2.8958 -1.4005 10 8 1.4401 -2.1691 -2.3221 11 7 0.4768 -4.0476 -1.6402 12 6 0.0430 -5.0274 -0.6157 13 6 -0.7219 -6.1074 -1.3699 14 1 -1.7714 -5.8264 -1.4568 15 6 -0.6100 -7.5285 -0.8583 16 6 -1.4326 -8.4157 -1.8088 17 6 -0.9712 -8.2844 -3.2567 18 6 -0.9562 -6.8170 -3.7179 19 1 -0.5713 -6.7511 -4.7355 20 7 -2.3099 -6.2603 -3.6573 21 6 -2.6668 -5.2353 -4.4923 22 1 -1.9501 -4.8371 -5.1953 23 6 -3.9492 -4.7074 -4.4345 24 7 -4.8225 -5.1924 -3.5774 25 14 -4.4358 -3.3087 -5.5730 26 1 -3.2818 -2.9480 -6.4352 27 1 -5.5745 -3.7370 -6.4246 28 1 -4.8381 -2.1296 -4.7649 29 6 -0.0440 -6.0632 -2.7701 30 1 0.9405 -6.5297 -2.7360 31 6 0.0579 -4.5477 -2.9760 32 1 -0.3634 0.0052 1.0277 33 1 -0.3634 0.8874 -0.5183 34 1 -0.3634 -0.8926 -0.5093 35 1 1.6967 2.1378 -0.0004 36 1 4.1583 2.0753 -0.0120 37 1 4.1585 -2.0749 -0.0004 38 1 2.1339 -3.2775 0.4460 39 1 0.5806 -2.4230 0.6054 40 1 0.9109 -5.4597 -0.1178 41 1 -0.6070 -4.5450 0.1142 42 1 0.4324 -7.8468 -0.8700 43 1 -1.0075 -7.5912 0.1547 44 1 -2.4801 -8.1218 -1.7413 45 1 -1.3346 -9.4556 -1.4974 46 1 -1.6461 -8.8516 -3.8978 47 1 0.0341 -8.6957 -3.3470 48 1 -2.9534 -6.6177 -3.0256 49 1 -5.7187 -4.8233 -3.5367 50 1 -0.9091 -4.1301 -3.2563 51 1 0.8113 -4.3125 -3.7277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992726345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:23 Heat of formation + Delta-G solvation = 5.085924 kcal Electronic energy + Delta-G solvation = -31021.009312 eV Core-core repulsion = 27112.839126 eV Total energy + Delta-G solvation = -3908.170186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68782 -40.03603 -38.44697 -35.44121 -34.42516 -33.69161 -32.58852 -31.42225 -30.53141 -29.10230 -28.41781 -27.43834 -26.79299 -24.54541 -23.36463 -22.77595 -21.78872 -20.89511 -20.75066 -19.04480 -18.70694 -17.18569 -16.90878 -16.76301 -16.50653 -15.83409 -15.38757 -14.85492 -14.78699 -14.49082 -14.29992 -14.11096 -13.90179 -13.56701 -13.45740 -12.99643 -12.92711 -12.83028 -12.71523 -12.69444 -12.42577 -12.30458 -11.97938 -11.85225 -11.58585 -11.44036 -11.39275 -11.17128 -10.91625 -10.77730 -10.41340 -10.31967 -10.12105 -9.93460 -9.74127 -9.55288 -9.52715 -9.44915 -9.40166 -8.99800 -8.92928 -8.26979 -7.02334 -5.83673 -3.11348 1.02937 1.20511 2.85203 3.19906 3.40361 3.48245 3.49195 3.75358 4.33133 4.54064 4.54911 4.61108 4.61488 4.77653 4.83781 4.85818 5.04602 5.14638 5.23176 5.28595 5.35484 5.40101 5.44610 5.48095 5.50866 5.54508 5.61889 5.67056 5.69884 5.77668 5.82694 5.90519 5.93818 5.96777 6.01135 6.02547 6.09253 6.22598 6.27735 6.30815 6.36406 6.49046 6.60687 6.62244 6.64566 6.74919 6.84201 6.84793 7.08039 7.66854 7.82094 7.90822 8.35311 8.40629 9.47662 10.03993 10.39081 11.38469 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003446 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.151173 B = 8124.195624 C = 9848.845396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.175 4.175 4 C 0.096 3.904 5 N -0.491 5.491 6 C 0.113 3.887 7 C -0.114 4.114 8 C -0.096 4.096 9 C 0.525 3.475 10 O -0.540 6.540 11 N -0.617 5.617 12 C 0.113 3.887 13 C -0.108 4.108 14 H 0.105 0.895 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.121 4.121 18 C 0.188 3.812 19 H 0.053 0.947 20 N -0.716 5.716 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.118 4.118 30 H 0.065 0.935 31 C 0.117 3.883 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.103 0.897 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.095 1.662 11.979 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.061 4.061 5 N -0.199 5.199 6 C -0.044 4.044 7 C -0.117 4.117 8 C -0.136 4.136 9 C 0.313 3.687 10 O -0.418 6.418 11 N -0.351 5.351 12 C -0.010 4.010 13 C -0.127 4.127 14 H 0.123 0.877 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.160 4.160 18 C 0.076 3.924 19 H 0.071 0.929 20 N -0.357 5.357 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.205 4.205 24 N -0.578 5.578 25 Si 0.730 3.270 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.141 4.141 30 H 0.083 0.917 31 C -0.004 4.004 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.220 0.780 49 H 0.064 0.936 50 H 0.121 0.879 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.179 2.260 11.344 17.535 hybrid contribution -1.516 0.689 -0.359 1.703 sum 11.663 2.948 10.984 16.291 Atomic orbital electron populations 1.20879 0.90260 1.04070 1.02554 1.20170 0.96753 0.92437 0.93735 1.21995 0.95619 0.98493 1.03350 1.22680 0.91758 0.96182 0.95460 1.67651 1.41093 0.98442 1.12749 1.22551 0.90833 0.96256 0.94751 1.20210 0.94932 0.94349 1.02192 1.20588 1.02023 0.95176 0.95832 1.19970 0.77994 0.80135 0.90611 1.90724 1.54322 1.50691 1.46023 1.49262 1.55868 1.20171 1.09764 1.21733 0.98011 0.90259 0.90969 1.21865 1.02329 0.93376 0.95137 0.87721 1.21245 0.99818 0.94059 0.98367 1.21454 1.00630 0.98356 0.94755 1.21796 1.00417 0.97774 0.95999 1.19915 0.86775 0.89935 0.95745 0.92852 1.42449 1.07939 1.40724 1.44625 1.19257 0.95776 1.08929 1.12889 0.91071 1.24676 0.96446 0.99950 0.99438 1.69652 1.05208 1.44366 1.38619 0.86232 0.78273 0.82144 0.80306 1.20456 1.21892 1.21948 1.22851 0.98762 0.94865 0.97578 0.91712 1.22268 1.01589 0.93694 0.82816 0.90432 0.90780 0.90785 0.84911 0.82962 0.83117 0.88003 0.87883 0.92109 0.91698 0.92497 0.92208 0.91454 0.92870 0.91841 0.92827 0.77997 0.93590 0.87887 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.31 36.00 0.34 -1.01 16 2 C -0.02 -0.29 5.92 -104.32 -0.62 -0.90 16 3 C -0.17 -1.95 9.82 -39.44 -0.39 -2.33 16 4 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 5 N -0.49 -6.61 10.36 -13.26 -0.14 -6.75 16 6 C 0.11 1.45 10.84 -17.55 -0.19 1.26 16 7 C -0.11 -1.46 4.39 -104.48 -0.46 -1.92 16 8 C -0.10 -1.11 4.38 -29.03 -0.13 -1.23 16 9 C 0.53 8.40 7.16 -10.99 -0.08 8.32 16 10 O -0.54 -10.90 16.33 5.56 0.09 -10.81 16 11 N -0.62 -9.73 3.38 -170.73 -0.58 -10.31 16 12 C 0.11 1.45 6.23 -3.42 -0.02 1.43 16 13 C -0.11 -1.57 2.20 -90.35 -0.20 -1.77 16 14 H 0.10 1.91 6.61 -51.93 -0.34 1.57 16 15 C -0.10 -1.18 5.73 -27.07 -0.16 -1.33 16 16 C -0.11 -1.54 5.57 -26.52 -0.15 -1.68 16 17 C -0.12 -1.78 5.52 -26.55 -0.15 -1.93 16 18 C 0.19 3.32 3.01 -68.20 -0.21 3.11 16 19 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 20 N -0.72 -15.81 3.82 -53.70 -0.21 -16.01 16 21 C -0.24 -6.05 7.98 -15.06 -0.12 -6.17 16 22 H 0.07 1.82 7.82 -52.49 -0.41 1.41 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 25 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 C -0.12 -1.88 2.37 -89.77 -0.21 -2.09 16 30 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 31 C 0.12 2.13 6.42 -2.70 -0.02 2.11 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.07 0.97 6.35 -51.93 -0.33 0.64 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.10 0.91 8.06 -51.93 -0.42 0.49 16 39 H 0.10 1.03 7.11 -51.93 -0.37 0.66 16 40 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.05 7.03 -51.93 -0.36 0.69 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.38 9.08 6.03 -40.82 -0.25 8.83 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.10 2.26 6.05 -51.93 -0.31 1.94 16 51 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -31.54 396.19 -10.45 -41.99 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -8.25 Total: 10.28 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.04 Total: -5.58 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.20 Total: -58.78 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.54 -10.45 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992726345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.078 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds