Wall clock time and date at job start Wed Apr 1 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38629 * 120.75073 * 2 1 4 4 C 1.38566 * 119.34776 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54881 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.90196 * 359.74282 * 4 3 2 7 7 C 1.32720 * 121.64018 * 0.52385 * 6 4 3 8 8 C 1.48172 * 119.71946 * 179.75447 * 7 6 4 9 9 O 1.21511 * 119.99861 * 179.72824 * 8 7 6 10 10 N 1.34778 * 119.99885 * 359.72783 * 8 7 6 11 11 C 1.47622 * 125.72589 * 359.97438 * 10 8 7 12 12 C 1.55845 * 104.46989 * 204.87164 * 11 10 8 13 13 H 1.08995 * 113.43324 * 201.16629 * 12 11 10 14 14 C 1.52987 * 106.36978 * 77.05418 * 12 11 10 15 15 C 1.52626 * 110.93231 * 198.11414 * 14 12 11 16 16 C 1.53293 * 108.50746 * 62.20550 * 15 14 12 17 17 C 1.52843 * 108.21612 * 296.20810 * 16 15 14 18 18 H 1.08998 * 109.06495 * 179.52717 * 17 16 15 19 19 N 1.46498 * 109.05782 * 298.52331 * 17 16 15 20 20 C 1.36943 * 119.99752 * 274.72079 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 C 1.50895 * 111.56622 * 59.05906 * 17 16 15 29 29 H 1.08996 * 109.03241 * 186.17863 * 28 17 16 30 30 C 1.47428 * 125.72577 * 180.02562 * 10 8 7 31 31 C 1.38582 * 120.75612 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46848 * 269.97947 * 1 2 3 33 33 H 1.09002 * 109.46730 * 29.97801 * 1 2 3 34 34 H 1.09001 * 109.46580 * 149.97465 * 1 2 3 35 35 H 1.07999 * 120.32856 * 0.04216 * 3 2 1 36 36 H 1.08996 * 109.47101 * 89.99823 * 5 4 3 37 37 H 1.08998 * 109.46957 * 210.00194 * 5 4 3 38 38 H 1.09007 * 109.47011 * 330.00128 * 5 4 3 39 39 H 1.08999 * 110.43278 * 86.12543 * 11 10 8 40 40 H 1.08995 * 110.43728 * 323.61425 * 11 10 8 41 41 H 1.08993 * 109.18107 * 77.74150 * 14 12 11 42 42 H 1.09001 * 109.18503 * 318.48973 * 14 12 11 43 43 H 1.08997 * 109.63180 * 302.49884 * 15 14 12 44 44 H 1.08997 * 109.79128 * 182.00869 * 15 14 12 45 45 H 1.08994 * 109.71725 * 176.52673 * 16 15 14 46 46 H 1.09003 * 109.71310 * 55.88652 * 16 15 14 47 47 H 0.97001 * 120.00384 * 95.00434 * 19 17 16 48 48 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.04592 * 60.06550 * 30 10 8 50 50 H 1.08997 * 110.08754 * 298.62064 * 30 10 8 51 51 H 1.07998 * 120.47132 * 359.96175 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2488 0.0127 0.0040 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.7994 -3.4812 -0.0007 10 7 5.7280 -2.3807 -0.0016 11 6 6.5600 -1.1612 -0.0026 12 6 7.9102 -1.6115 -0.6374 13 1 8.7456 -0.9570 -0.3890 14 6 7.6684 -1.7029 -2.1453 15 6 8.7482 -2.5439 -2.8207 16 6 8.6793 -3.9679 -2.2575 17 6 9.0126 -3.9088 -0.7670 18 1 8.9593 -4.9145 -0.3501 19 7 10.3741 -3.3940 -0.6013 20 6 11.4422 -4.2481 -0.6717 21 1 11.2811 -5.3004 -0.8537 22 6 12.7320 -3.7614 -0.5090 23 7 12.9282 -2.4790 -0.2866 24 14 14.1890 -4.9263 -0.6056 25 1 14.2163 -5.5751 -1.9411 26 1 15.4467 -4.1641 -0.3993 27 1 14.0624 -5.9657 0.4473 28 6 8.0536 -3.0154 -0.0192 29 1 8.3918 -2.9153 1.0121 30 6 6.6183 -3.5558 -0.0022 31 6 2.2158 -1.1909 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3632 -0.8898 -0.5142 35 1 1.6936 2.1367 0.0007 36 1 4.5634 2.7607 1.0278 37 1 5.3261 2.3040 -0.5143 38 1 3.7996 3.2195 -0.5131 39 1 6.7178 -0.8074 1.0162 40 1 6.0951 -0.3838 -0.6088 41 1 7.6774 -0.6995 -2.5709 42 1 6.6947 -2.1586 -2.3250 43 1 9.7289 -2.1154 -2.6140 44 1 8.5784 -2.5672 -3.8972 45 1 9.4020 -4.6018 -2.7710 46 1 7.6750 -4.3691 -2.3940 47 1 10.5188 -2.4489 -0.4377 48 1 13.8295 -2.1388 -0.1733 49 1 6.4364 -4.1619 -0.8897 50 1 6.4539 -4.1505 0.8963 51 1 1.6959 -2.1375 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992745579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:40 Heat of formation + Delta-G solvation = 10.062499 kcal Electronic energy + Delta-G solvation = -30801.307361 eV Core-core repulsion = 26893.352975 eV Total energy + Delta-G solvation = -3907.954386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08887 -40.06446 -38.35595 -35.57546 -34.53117 -33.32517 -33.01439 -31.42197 -30.44285 -29.28189 -28.37810 -27.83153 -26.44145 -25.38110 -23.88218 -22.56626 -21.71245 -21.54092 -20.86867 -19.60303 -18.05397 -17.42467 -17.10881 -16.54407 -16.19737 -15.95093 -15.66134 -15.15497 -14.63830 -14.45391 -14.22860 -13.83802 -13.73042 -13.69254 -13.55119 -13.29106 -13.18241 -12.97089 -12.85781 -12.65818 -12.48615 -12.39826 -12.26154 -11.94607 -11.57264 -11.51053 -11.22926 -11.14311 -10.89635 -10.80114 -10.70506 -10.31116 -10.13320 -10.08727 -9.85722 -9.65293 -9.57719 -9.47316 -9.28885 -9.27236 -8.81515 -8.44674 -6.91924 -5.73984 -3.01566 0.42791 0.88394 2.63611 2.93180 3.45907 3.50704 3.51139 3.61936 3.81369 4.21358 4.31008 4.59038 4.64999 4.73770 4.78620 4.86614 4.99423 5.05648 5.11276 5.12742 5.23327 5.30870 5.35268 5.45469 5.46527 5.53388 5.61270 5.67376 5.75854 5.77028 5.79274 5.84627 5.88406 5.90518 5.98359 6.03706 6.14786 6.23580 6.25744 6.31495 6.34125 6.44830 6.50439 6.58637 6.60560 6.88896 6.92955 7.09526 7.16657 7.48277 7.59961 7.73284 8.14066 8.45048 9.56523 10.14009 10.49719 11.48672 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.002521 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.930893 B =11105.653343 C =11701.857824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.156 4.156 4 C 0.128 3.872 5 C -0.105 4.105 6 N -0.455 5.455 7 C 0.097 3.903 8 C 0.579 3.421 9 O -0.542 6.542 10 N -0.590 5.590 11 C 0.103 3.897 12 C -0.092 4.092 13 H 0.102 0.898 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.134 4.134 17 C 0.189 3.811 18 H 0.047 0.953 19 N -0.719 5.719 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.096 4.096 29 H 0.078 0.922 30 C 0.114 3.886 31 C -0.122 4.122 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.972 10.732 -0.106 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.176 4.176 4 C -0.012 4.012 5 C -0.162 4.162 6 N -0.168 5.168 7 C -0.041 4.041 8 C 0.365 3.635 9 O -0.420 6.420 10 N -0.321 5.321 11 C -0.019 4.019 12 C -0.111 4.111 13 H 0.120 0.880 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.174 4.174 17 C 0.079 3.921 18 H 0.065 0.935 19 N -0.360 5.360 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.116 4.116 29 H 0.096 0.904 30 C -0.008 4.008 31 C -0.143 4.143 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.304 9.981 -0.089 25.351 hybrid contribution 0.047 -0.310 0.056 0.319 sum -23.257 9.671 -0.033 25.187 Atomic orbital electron populations 1.20837 0.89691 1.03593 1.03123 1.20335 0.97078 0.92513 0.95502 1.22056 0.94831 0.98813 1.01882 1.21417 0.91201 0.94049 0.94520 1.20750 1.00551 0.91470 1.03444 1.67725 1.39942 0.97537 1.11606 1.21100 0.91521 0.92041 0.99450 1.17490 0.80881 0.87360 0.77726 1.90775 1.69267 1.30167 1.51748 1.48430 1.04225 1.09645 1.69782 1.23049 0.90203 0.87228 1.01414 1.22417 0.96380 0.96831 0.95481 0.88026 1.21431 0.98959 0.99560 0.94271 1.21381 0.99824 0.96154 0.97591 1.22173 0.99180 0.96587 0.99436 1.19539 0.85320 0.95184 0.92070 0.93520 1.42371 0.99108 1.08432 1.86082 1.19196 0.85578 0.90986 1.40825 0.91321 1.24695 0.97287 0.95960 1.02993 1.69643 1.20660 1.11754 1.56177 0.86304 0.82460 0.79867 0.77770 1.21383 1.21816 1.21387 1.21694 0.92985 0.95652 1.01258 0.90372 1.21999 0.88844 0.87850 1.02115 1.21962 0.93719 0.99530 0.99086 0.90296 0.90826 0.90697 0.84471 0.90101 0.89950 0.90609 0.91768 0.87714 0.92843 0.92893 0.90293 0.93664 0.91964 0.93877 0.78187 0.93569 0.90861 0.91420 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.06 36.01 0.36 -0.24 16 2 C -0.05 -0.39 5.91 -104.35 -0.62 -1.01 16 3 C -0.16 -1.21 9.45 -39.32 -0.37 -1.58 16 4 C 0.13 1.19 6.78 -82.60 -0.56 0.63 16 5 C -0.10 -0.68 10.17 36.00 0.37 -0.32 16 6 N -0.45 -5.45 6.51 -6.06 -0.04 -5.49 16 7 C 0.10 1.28 6.72 -83.01 -0.56 0.73 16 8 C 0.58 9.07 7.85 -12.18 -0.10 8.98 16 9 O -0.54 -9.77 16.66 5.36 0.09 -9.68 16 10 N -0.59 -8.87 2.86 -171.02 -0.49 -9.36 16 11 C 0.10 1.41 5.22 -1.91 -0.01 1.40 16 12 C -0.09 -1.38 3.35 -88.55 -0.30 -1.68 16 13 H 0.10 1.60 7.92 -51.93 -0.41 1.19 16 14 C -0.10 -1.56 4.81 -26.93 -0.13 -1.69 16 15 C -0.11 -1.91 5.84 -26.77 -0.16 -2.07 16 16 C -0.13 -2.40 5.49 -26.66 -0.15 -2.55 16 17 C 0.19 3.65 2.50 -69.07 -0.17 3.48 16 18 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 19 N -0.72 -17.12 4.18 -54.54 -0.23 -17.34 16 20 C -0.23 -6.33 9.91 -15.06 -0.15 -6.48 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 24 Si 0.90 22.26 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C -0.10 -1.58 2.22 -90.93 -0.20 -1.78 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 C 0.11 1.78 5.87 -3.34 -0.02 1.76 16 31 C -0.12 -1.35 9.34 -39.06 -0.36 -1.72 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.37 5.70 -51.93 -0.30 1.08 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.81 7.17 -51.93 -0.37 0.44 16 43 H 0.08 1.57 7.37 -51.93 -0.38 1.19 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.04 0.71 6.74 -51.93 -0.35 0.36 16 47 H 0.38 9.66 7.19 -40.82 -0.29 9.37 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.07 1.17 6.49 -51.93 -0.34 0.84 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 51 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -31.59 397.17 -10.49 -42.08 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.30 Total: 8.02 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.22 Total: -4.62 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.03 Total: -59.02 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.59 -10.49 -42.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992745579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.144 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds