Wall clock time and date at job start Wed Apr 1 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38629 * 120.75073 * 2 1 4 4 C 1.38566 * 119.34776 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.54881 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.90196 * 359.74282 * 4 3 2 7 7 C 1.32720 * 121.64018 * 0.52385 * 6 4 3 8 8 C 1.48172 * 119.71946 * 179.75447 * 7 6 4 9 9 O 1.21511 * 119.99861 * 179.72824 * 8 7 6 10 10 N 1.34778 * 119.99885 * 359.72783 * 8 7 6 11 11 C 1.47622 * 125.72589 * 359.97438 * 10 8 7 12 12 C 1.55845 * 104.46989 * 204.87164 * 11 10 8 13 13 H 1.08995 * 113.43324 * 201.16629 * 12 11 10 14 14 C 1.52987 * 106.36978 * 77.05418 * 12 11 10 15 15 C 1.52626 * 110.93231 * 198.11414 * 14 12 11 16 16 C 1.53293 * 108.50746 * 62.20550 * 15 14 12 17 17 C 1.52843 * 108.21612 * 296.20810 * 16 15 14 18 18 H 1.08998 * 109.06495 * 179.52717 * 17 16 15 19 19 N 1.46498 * 109.05782 * 298.52331 * 17 16 15 20 20 C 1.36943 * 119.99752 * 274.72079 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 C 1.50895 * 111.56622 * 59.05906 * 17 16 15 29 29 H 1.08996 * 109.03241 * 186.17863 * 28 17 16 30 30 C 1.47428 * 125.72577 * 180.02562 * 10 8 7 31 31 C 1.38582 * 120.75612 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46848 * 269.97947 * 1 2 3 33 33 H 1.09002 * 109.46730 * 29.97801 * 1 2 3 34 34 H 1.09001 * 109.46580 * 149.97465 * 1 2 3 35 35 H 1.07999 * 120.32856 * 0.04216 * 3 2 1 36 36 H 1.08996 * 109.47101 * 89.99823 * 5 4 3 37 37 H 1.08998 * 109.46957 * 210.00194 * 5 4 3 38 38 H 1.09007 * 109.47011 * 330.00128 * 5 4 3 39 39 H 1.08999 * 110.43278 * 86.12543 * 11 10 8 40 40 H 1.08995 * 110.43728 * 323.61425 * 11 10 8 41 41 H 1.08993 * 109.18107 * 77.74150 * 14 12 11 42 42 H 1.09001 * 109.18503 * 318.48973 * 14 12 11 43 43 H 1.08997 * 109.63180 * 302.49884 * 15 14 12 44 44 H 1.08997 * 109.79128 * 182.00869 * 15 14 12 45 45 H 1.08994 * 109.71725 * 176.52673 * 16 15 14 46 46 H 1.09003 * 109.71310 * 55.88652 * 16 15 14 47 47 H 0.97001 * 120.00384 * 95.00434 * 19 17 16 48 48 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.04592 * 60.06550 * 30 10 8 50 50 H 1.08997 * 110.08754 * 298.62064 * 30 10 8 51 51 H 1.07998 * 120.47132 * 359.96175 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2488 0.0127 0.0040 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.7994 -3.4812 -0.0007 10 7 5.7280 -2.3807 -0.0016 11 6 6.5600 -1.1612 -0.0026 12 6 7.9102 -1.6115 -0.6374 13 1 8.7456 -0.9570 -0.3890 14 6 7.6684 -1.7029 -2.1453 15 6 8.7482 -2.5439 -2.8207 16 6 8.6793 -3.9679 -2.2575 17 6 9.0126 -3.9088 -0.7670 18 1 8.9593 -4.9145 -0.3501 19 7 10.3741 -3.3940 -0.6013 20 6 11.4422 -4.2481 -0.6717 21 1 11.2811 -5.3004 -0.8537 22 6 12.7320 -3.7614 -0.5090 23 7 12.9282 -2.4790 -0.2866 24 14 14.1890 -4.9263 -0.6056 25 1 14.2163 -5.5751 -1.9411 26 1 15.4467 -4.1641 -0.3993 27 1 14.0624 -5.9657 0.4473 28 6 8.0536 -3.0154 -0.0192 29 1 8.3918 -2.9153 1.0121 30 6 6.6183 -3.5558 -0.0022 31 6 2.2158 -1.1909 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3632 -0.8898 -0.5142 35 1 1.6936 2.1367 0.0007 36 1 4.5634 2.7607 1.0278 37 1 5.3261 2.3040 -0.5143 38 1 3.7996 3.2195 -0.5131 39 1 6.7178 -0.8074 1.0162 40 1 6.0951 -0.3838 -0.6088 41 1 7.6774 -0.6995 -2.5709 42 1 6.6947 -2.1586 -2.3250 43 1 9.7289 -2.1154 -2.6140 44 1 8.5784 -2.5672 -3.8972 45 1 9.4020 -4.6018 -2.7710 46 1 7.6750 -4.3691 -2.3940 47 1 10.5188 -2.4489 -0.4377 48 1 13.8295 -2.1388 -0.1733 49 1 6.4364 -4.1619 -0.8897 50 1 6.4539 -4.1505 0.8963 51 1 1.6959 -2.1375 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992745579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:38 Heat of formation + Delta-G solvation = -6.942214 kcal Electronic energy + Delta-G solvation = -30802.044741 eV Core-core repulsion = 26893.352975 eV Total energy + Delta-G solvation = -3908.691765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.10567 -41.14540 -39.59597 -37.05431 -35.30143 -34.94166 -33.81229 -33.12171 -31.73872 -30.94548 -29.01674 -28.41474 -27.83986 -26.59707 -25.50386 -23.93029 -23.05270 -22.44916 -22.03306 -20.68260 -19.45964 -19.15347 -18.44531 -17.49533 -17.15304 -16.94993 -16.79424 -16.50069 -16.25811 -15.60712 -15.28713 -15.27355 -15.21433 -14.79741 -14.70275 -14.18756 -14.11074 -13.96248 -13.89529 -13.67267 -13.40868 -13.22889 -13.04591 -13.02750 -12.94672 -12.73816 -12.68721 -12.60891 -12.55506 -12.37161 -12.22201 -12.08393 -11.82436 -11.46125 -11.30067 -11.16283 -10.88801 -10.67918 -10.50722 -10.28778 -10.06339 -9.63974 -8.93833 -7.89107 -5.15315 -0.39038 0.19089 1.48841 1.50517 1.56300 1.62335 1.79835 2.59018 2.76732 2.95058 3.42017 3.43437 3.52764 3.62475 3.67745 3.81070 3.99790 4.03809 4.13068 4.18886 4.26010 4.32072 4.40028 4.43099 4.50829 4.51262 4.63369 4.64739 4.68180 4.74612 4.79065 4.81553 4.84942 4.87104 4.92274 4.97913 5.02276 5.07470 5.08615 5.13582 5.23496 5.28320 5.29228 5.33830 5.40891 5.45596 5.54720 5.61487 5.69560 5.70666 6.32985 6.37881 6.69309 7.01636 7.40555 8.16228 8.41917 9.33927 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.002521 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.930893 B =11105.653343 C =11701.857824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.117 3.883 5 C -0.103 4.103 6 N -0.474 5.474 7 C 0.068 3.932 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.592 5.592 11 C 0.118 3.882 12 C -0.089 4.089 13 H 0.095 0.905 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.127 4.127 17 C 0.188 3.812 18 H 0.037 0.963 19 N -0.725 5.725 20 C -0.233 4.233 21 H 0.070 0.930 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.282 1.282 28 C -0.087 4.087 29 H 0.066 0.934 30 C 0.121 3.879 31 C -0.132 4.132 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.376 0.624 48 H 0.249 0.751 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.317 12.595 -0.496 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.023 4.023 5 C -0.160 4.160 6 N -0.187 5.187 7 C -0.069 4.069 8 C 0.363 3.637 9 O -0.456 6.456 10 N -0.322 5.322 11 C -0.004 4.004 12 C -0.109 4.109 13 H 0.113 0.887 14 C -0.132 4.132 15 C -0.144 4.144 16 C -0.167 4.167 17 C 0.079 3.921 18 H 0.055 0.945 19 N -0.365 5.365 20 C -0.365 4.365 21 H 0.088 0.912 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.208 1.208 28 C -0.107 4.107 29 H 0.085 0.915 30 C -0.002 4.002 31 C -0.153 4.153 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.193 0.807 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.209 0.791 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.680 11.823 -0.487 28.275 hybrid contribution 0.650 -0.849 0.182 1.085 sum -25.030 10.974 -0.305 27.331 Atomic orbital electron populations 1.20923 0.87229 1.04745 1.04145 1.20711 0.98752 0.91670 0.94127 1.22492 0.94284 1.00096 0.99293 1.21990 0.92462 0.94025 0.93832 1.20843 1.00269 0.90642 1.04229 1.67598 1.40698 0.97894 1.12535 1.20787 0.92003 0.91461 1.02599 1.17982 0.80824 0.88144 0.76732 1.90737 1.69840 1.31674 1.53339 1.48468 1.04335 1.09626 1.69776 1.22981 0.88922 0.86873 1.01638 1.22378 0.97030 0.95624 0.95819 0.88696 1.21342 0.97937 1.00149 0.93777 1.21306 0.98939 0.95469 0.98735 1.22056 0.99606 0.97188 0.97853 1.19667 0.83983 0.95098 0.93331 0.94521 1.42468 1.00285 1.07741 1.86031 1.19524 0.86562 0.91427 1.39005 0.91180 1.25403 0.99714 0.97357 1.03995 1.69787 1.20605 1.13259 1.58032 0.85335 0.79241 0.78049 0.77872 1.20804 1.22321 1.20822 1.21470 0.92857 0.96198 1.00200 0.91541 1.21826 0.88267 0.88191 1.01919 1.22047 0.93101 1.00605 0.99564 0.89178 0.88635 0.90648 0.80690 0.89281 0.90791 0.87935 0.91506 0.86571 0.91006 0.92746 0.93337 0.92171 0.93919 0.91910 0.79120 0.94195 0.91180 0.91593 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.06 71.24 0.72 -0.11 16 2 C -0.04 -0.64 5.91 -19.69 -0.12 -0.76 16 3 C -0.14 -1.69 9.45 22.44 0.21 -1.48 16 4 C 0.12 1.88 6.78 42.68 0.29 2.17 16 5 C -0.10 -1.02 10.17 71.23 0.72 -0.29 16 6 N -0.47 -10.74 6.51 -173.08 -1.13 -11.86 16 7 C 0.07 1.78 6.72 41.91 0.28 2.06 16 8 C 0.57 18.22 7.85 86.88 0.68 18.90 16 9 O -0.58 -21.31 16.66 -3.75 -0.06 -21.37 16 10 N -0.59 -17.79 2.86 -813.27 -2.33 -20.12 16 11 C 0.12 3.14 5.22 87.15 0.46 3.60 16 12 C -0.09 -2.67 3.35 -9.45 -0.03 -2.70 16 13 H 0.09 3.01 7.92 -2.39 -0.02 2.99 16 14 C -0.09 -2.73 4.81 30.47 0.15 -2.58 16 15 C -0.11 -3.61 5.84 30.57 0.18 -3.43 16 16 C -0.13 -4.58 5.49 30.64 0.17 -4.42 16 17 C 0.19 7.40 2.50 44.25 0.11 7.51 16 18 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 19 N -0.72 -35.40 4.18 -326.46 -1.36 -36.76 16 20 C -0.23 -12.79 9.91 84.03 0.83 -11.95 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 24 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 28 C -0.09 -2.93 2.22 -10.99 -0.02 -2.95 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 C 0.12 3.80 5.87 86.33 0.51 4.30 16 31 C -0.13 -2.82 9.34 22.61 0.21 -2.61 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.30 8.10 -2.39 -0.02 0.29 16 34 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.46 8.08 -2.38 -0.02 0.45 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.12 2.91 5.70 -2.39 -0.01 2.89 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.58 7.17 -2.39 -0.02 1.57 16 43 H 0.05 1.95 7.37 -2.39 -0.02 1.94 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 2.02 6.74 -2.39 -0.02 2.01 16 47 H 0.38 19.50 7.19 -92.71 -0.67 18.83 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.07 2.25 6.49 -2.39 -0.02 2.23 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.14 3.05 7.64 -2.91 -0.02 3.02 16 Total: -1.00 -69.93 397.17 3.50 -66.43 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.26 Total: 31.59 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.81 Total: 1.61 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -4.53 Total: -126.64 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -69.93 3.50 -66.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992745579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.483 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds