Wall clock time and date at job start Wed Apr 1 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38628 * 120.75442 * 2 1 4 4 C 1.38565 * 119.35075 * 179.97438 * 3 2 1 5 5 C 1.50693 * 119.54663 * 180.02562 * 4 3 2 6 6 N 1.31520 * 120.90206 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.64309 * 359.97438 * 6 4 3 8 8 C 1.48176 * 119.72208 * 180.02562 * 7 6 4 9 9 O 1.21509 * 119.99966 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99739 * 0.02562 * 8 7 6 11 11 C 1.48243 * 125.78666 * 0.02562 * 10 8 7 12 12 C 1.52328 * 105.86475 * 176.81123 * 11 10 8 13 13 H 1.09000 * 110.24984 * 272.17872 * 12 11 10 14 14 C 1.51446 * 117.44890 * 145.31405 * 12 11 10 15 15 C 1.53843 * 107.03993 * 181.22994 * 14 12 11 16 16 C 1.52529 * 111.66056 * 57.20370 * 15 14 12 17 17 C 1.53813 * 111.64373 * 305.98953 * 16 15 14 18 18 H 1.09001 * 109.94374 * 176.87685 * 17 16 15 19 19 N 1.46502 * 109.94165 * 298.12211 * 17 16 15 20 20 C 1.36931 * 120.00058 * 208.82995 * 19 17 16 21 21 H 1.08003 * 119.99827 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00351 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99787 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00517 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46928 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47234 * 119.99496 * 24 22 20 27 27 H 1.48492 * 109.47332 * 239.99780 * 24 22 20 28 28 C 1.51461 * 107.10188 * 57.56336 * 17 16 15 29 29 H 1.09008 * 111.27875 * 55.57963 * 28 17 16 30 30 C 1.48663 * 125.78367 * 179.97438 * 10 8 7 31 31 C 1.38593 * 120.75715 * 180.27360 * 2 1 3 32 32 H 1.09000 * 109.46739 * 89.99862 * 1 2 3 33 33 H 1.08992 * 109.47192 * 210.00113 * 1 2 3 34 34 H 1.09004 * 109.46808 * 329.99971 * 1 2 3 35 35 H 1.07999 * 120.32403 * 0.02562 * 3 2 1 36 36 H 1.09010 * 109.46952 * 270.01821 * 5 4 3 37 37 H 1.08998 * 109.47965 * 30.01780 * 5 4 3 38 38 H 1.09001 * 109.47367 * 150.02584 * 5 4 3 39 39 H 1.09002 * 110.17135 * 57.71410 * 11 10 8 40 40 H 1.08993 * 110.17393 * 295.91394 * 11 10 8 41 41 H 1.09004 * 109.93649 * 61.85085 * 14 12 11 42 42 H 1.08998 * 109.93994 * 300.61669 * 14 12 11 43 43 H 1.08994 * 109.04788 * 296.63631 * 15 14 12 44 44 H 1.09009 * 109.03858 * 177.76112 * 15 14 12 45 45 H 1.09004 * 109.03318 * 66.52281 * 16 15 14 46 46 H 1.08999 * 109.03609 * 185.45262 * 16 15 14 47 47 H 0.97005 * 119.99795 * 28.83256 * 19 17 16 48 48 H 0.97001 * 120.00354 * 180.02562 * 23 22 20 49 49 H 1.09007 * 110.62499 * 37.13569 * 30 10 8 50 50 H 1.08999 * 110.62698 * 274.11465 * 30 10 8 51 51 H 1.08003 * 120.46674 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1574 0.0005 5 6 4.3762 2.4497 0.0011 6 7 4.2488 0.0127 0.0005 7 6 3.6082 -1.1497 0.0005 8 6 4.3807 -2.4142 0.0011 9 8 3.7994 -3.4812 0.0007 10 7 5.7280 -2.3807 0.0022 11 6 6.5647 -1.1570 0.0034 12 6 8.0074 -1.6391 0.0858 13 1 8.3046 -1.7638 1.1270 14 6 9.0553 -0.8360 -0.6561 15 6 10.4035 -1.5443 -0.4388 16 6 10.3598 -2.9947 -0.9089 17 6 9.1979 -3.7664 -0.2606 18 1 9.1587 -4.7812 -0.6565 19 7 9.3717 -3.8022 1.1936 20 6 8.8700 -4.8508 1.9175 21 1 8.3466 -5.6516 1.4162 22 6 9.0342 -4.8846 3.2954 23 7 9.6725 -3.9090 3.9061 24 14 8.3505 -6.3153 4.2827 25 1 7.6816 -7.2740 3.3668 26 1 9.4595 -7.0009 4.9938 27 1 7.3665 -5.8083 5.2725 28 6 7.9225 -3.0281 -0.6108 29 1 7.8161 -2.9121 -1.6894 30 6 6.6269 -3.5648 0.0034 31 6 2.2158 -1.1910 -0.0057 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6936 2.1366 0.0004 36 1 4.5632 2.7617 -1.0265 37 1 3.7998 3.2190 0.5151 38 1 5.3263 2.3034 0.5149 39 1 6.3251 -0.5387 0.8685 40 1 6.4085 -0.5940 -0.9167 41 1 9.0989 0.1772 -0.2564 42 1 8.8176 -0.8072 -1.7195 43 1 10.6502 -1.5218 0.6226 44 1 11.1774 -1.0138 -0.9937 45 1 10.2387 -3.0138 -1.9920 46 1 11.2994 -3.4815 -0.6479 47 1 9.8421 -3.0831 1.6437 48 1 9.7876 -3.9327 4.8690 49 1 6.2118 -4.3627 -0.6125 50 1 6.8000 -3.9144 1.0212 51 1 1.6959 -2.1376 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992745583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:44 Heat of formation + Delta-G solvation = 10.680605 kcal Electronic energy + Delta-G solvation = -31183.732949 eV Core-core repulsion = 27275.805366 eV Total energy + Delta-G solvation = -3907.927583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82367 -39.83037 -38.22316 -35.41451 -34.36285 -33.60302 -32.89544 -31.32091 -30.23130 -28.85514 -28.21969 -27.70012 -26.75917 -25.27151 -23.74539 -22.83869 -21.42427 -20.70714 -20.65430 -19.33168 -18.65376 -17.24437 -17.09091 -16.45442 -16.04959 -15.63832 -15.33516 -14.72571 -14.69810 -14.36181 -14.14208 -13.96155 -13.76502 -13.59979 -13.55954 -13.06206 -12.90953 -12.82045 -12.53591 -12.46933 -12.40171 -12.24977 -12.11910 -11.87092 -11.69946 -11.49997 -11.26352 -11.08535 -10.85666 -10.70240 -10.32561 -10.20821 -10.10279 -10.03124 -9.82994 -9.68934 -9.46854 -9.35239 -9.25000 -9.10865 -8.85204 -8.13072 -6.95138 -5.76670 -3.04169 0.60907 1.04746 2.87307 3.20417 3.45757 3.53353 3.54010 3.83027 3.99536 4.34888 4.47097 4.61412 4.79046 4.84383 4.90094 5.08625 5.17040 5.19269 5.22384 5.25638 5.36981 5.39895 5.49046 5.53404 5.57355 5.58050 5.70388 5.78432 5.80174 5.85458 5.90464 5.92830 6.03472 6.05380 6.08987 6.13131 6.19350 6.21666 6.32716 6.44004 6.45970 6.47918 6.64059 6.71477 6.73520 6.83795 6.92801 6.96021 7.19131 7.69535 7.73317 7.89556 8.42264 8.42494 9.54494 10.11477 10.46487 11.45610 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.003575 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.855721 B = 7831.234212 C = 9171.502125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.159 4.159 4 C 0.126 3.874 5 C -0.103 4.103 6 N -0.454 5.454 7 C 0.100 3.900 8 C 0.575 3.425 9 O -0.545 6.545 10 N -0.593 5.593 11 C 0.136 3.864 12 C -0.114 4.114 13 H 0.102 0.898 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.189 3.811 18 H 0.054 0.946 19 N -0.715 5.715 20 C -0.237 4.237 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.120 4.120 29 H 0.064 0.936 30 C 0.115 3.885 31 C -0.123 4.123 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 14.564 -11.512 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.179 4.179 4 C -0.014 4.014 5 C -0.160 4.160 6 N -0.167 5.167 7 C -0.038 4.038 8 C 0.361 3.639 9 O -0.423 6.423 10 N -0.324 5.324 11 C 0.014 3.986 12 C -0.133 4.133 13 H 0.120 0.880 14 C -0.133 4.133 15 C -0.152 4.152 16 C -0.160 4.160 17 C 0.078 3.922 18 H 0.072 0.928 19 N -0.357 5.357 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.142 4.142 29 H 0.082 0.918 30 C -0.006 4.006 31 C -0.144 4.144 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.122 0.878 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.939 13.783 -11.429 20.982 hybrid contribution -1.214 -0.455 0.817 1.532 sum -12.153 13.328 -10.612 20.927 Atomic orbital electron populations 1.20821 0.89796 1.03535 1.02989 1.20316 0.96996 0.92547 0.95763 1.22022 0.94850 0.98701 1.02291 1.21366 0.91140 0.94030 0.94861 1.20722 1.00572 0.91557 1.03184 1.67727 1.40336 0.97468 1.11199 1.21197 0.91531 0.92191 0.98906 1.17482 0.81152 0.87224 0.78033 1.90764 1.69242 1.30130 1.52176 1.49062 1.04192 1.09888 1.69267 1.21701 0.89168 0.85968 1.01778 1.21995 0.92923 0.95565 1.02772 0.87952 1.21221 0.94737 0.98107 0.99248 1.21464 0.96188 0.95491 1.02034 1.21804 0.99700 0.95434 0.99042 1.19855 0.90087 0.95944 0.86329 0.92815 1.42455 1.67226 1.26024 1.00008 1.19269 1.28667 0.99576 0.89287 0.91054 1.24683 1.01151 0.98136 0.96640 1.69654 1.46793 1.32721 1.08686 0.86219 0.78150 0.82108 0.80403 1.20443 1.21952 1.21983 1.22806 0.96465 0.97115 0.97791 0.91774 1.22299 0.87749 0.86621 1.03904 1.21982 0.93841 0.99481 0.99104 0.90407 0.90726 0.90914 0.84622 0.90317 0.90716 0.90023 0.90959 0.91745 0.92322 0.92553 0.91448 0.92980 0.92885 0.91917 0.77968 0.93633 0.91704 0.87767 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.06 36.01 0.36 -0.43 16 2 C -0.05 -0.50 5.91 -104.34 -0.62 -1.12 16 3 C -0.16 -1.52 9.45 -39.32 -0.37 -1.89 16 4 C 0.13 1.41 6.78 -82.61 -0.56 0.85 16 5 C -0.10 -0.81 10.17 36.00 0.37 -0.45 16 6 N -0.45 -6.50 6.81 -6.06 -0.04 -6.54 16 7 C 0.10 1.59 6.72 -83.01 -0.56 1.03 16 8 C 0.57 10.93 7.85 -12.18 -0.10 10.83 16 9 O -0.54 -11.71 16.62 5.36 0.09 -11.62 16 10 N -0.59 -11.03 3.38 -171.83 -0.58 -11.61 16 11 C 0.14 2.21 5.09 -3.43 -0.02 2.19 16 12 C -0.11 -1.88 2.24 -90.35 -0.20 -2.08 16 13 H 0.10 2.07 6.54 -51.93 -0.34 1.73 16 14 C -0.10 -1.31 5.71 -27.08 -0.15 -1.47 16 15 C -0.11 -1.66 5.57 -26.53 -0.15 -1.81 16 16 C -0.12 -1.90 5.52 -26.55 -0.15 -2.04 16 17 C 0.19 3.53 3.00 -68.28 -0.20 3.33 16 18 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 19 N -0.72 -16.54 3.83 -53.77 -0.21 -16.74 16 20 C -0.24 -6.24 8.09 -15.06 -0.12 -6.36 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 24 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 C -0.12 -2.07 2.34 -89.95 -0.21 -2.28 16 29 H 0.06 1.03 8.04 -51.92 -0.42 0.61 16 30 C 0.11 2.26 6.44 -2.80 -0.02 2.24 16 31 C -0.12 -1.65 9.34 -39.05 -0.36 -2.02 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 40 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 43 H 0.07 1.13 7.02 -51.93 -0.36 0.76 16 44 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.39 9.49 5.95 -40.82 -0.24 9.25 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 50 H 0.10 2.42 6.14 -51.93 -0.32 2.10 16 51 H 0.15 1.92 7.64 -52.48 -0.40 1.51 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -31.45 396.28 -10.53 -41.98 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.31 Total: 9.47 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.16 Total: -1.85 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.10 Total: -61.45 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.45 -10.53 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992745583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.661 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds