Wall clock time and date at job start Wed Apr 1 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38628 * 120.75442 * 2 1 4 4 C 1.38565 * 119.35075 * 179.97438 * 3 2 1 5 5 C 1.50693 * 119.54663 * 180.02562 * 4 3 2 6 6 N 1.31520 * 120.90206 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.64309 * 359.97438 * 6 4 3 8 8 C 1.48176 * 119.72208 * 180.02562 * 7 6 4 9 9 O 1.21509 * 119.99966 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99739 * 0.02562 * 8 7 6 11 11 C 1.48243 * 125.78666 * 0.02562 * 10 8 7 12 12 C 1.52328 * 105.86475 * 176.81123 * 11 10 8 13 13 H 1.09000 * 110.24984 * 272.17872 * 12 11 10 14 14 C 1.51446 * 117.44890 * 145.31405 * 12 11 10 15 15 C 1.53843 * 107.03993 * 181.22994 * 14 12 11 16 16 C 1.52529 * 111.66056 * 57.20370 * 15 14 12 17 17 C 1.53813 * 111.64373 * 305.98953 * 16 15 14 18 18 H 1.09001 * 109.94374 * 176.87685 * 17 16 15 19 19 N 1.46502 * 109.94165 * 298.12211 * 17 16 15 20 20 C 1.36931 * 120.00058 * 208.82995 * 19 17 16 21 21 H 1.08003 * 119.99827 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00351 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99787 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00517 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46928 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47234 * 119.99496 * 24 22 20 27 27 H 1.48492 * 109.47332 * 239.99780 * 24 22 20 28 28 C 1.51461 * 107.10188 * 57.56336 * 17 16 15 29 29 H 1.09008 * 111.27875 * 55.57963 * 28 17 16 30 30 C 1.48663 * 125.78367 * 179.97438 * 10 8 7 31 31 C 1.38593 * 120.75715 * 180.27360 * 2 1 3 32 32 H 1.09000 * 109.46739 * 89.99862 * 1 2 3 33 33 H 1.08992 * 109.47192 * 210.00113 * 1 2 3 34 34 H 1.09004 * 109.46808 * 329.99971 * 1 2 3 35 35 H 1.07999 * 120.32403 * 0.02562 * 3 2 1 36 36 H 1.09010 * 109.46952 * 270.01821 * 5 4 3 37 37 H 1.08998 * 109.47965 * 30.01780 * 5 4 3 38 38 H 1.09001 * 109.47367 * 150.02584 * 5 4 3 39 39 H 1.09002 * 110.17135 * 57.71410 * 11 10 8 40 40 H 1.08993 * 110.17393 * 295.91394 * 11 10 8 41 41 H 1.09004 * 109.93649 * 61.85085 * 14 12 11 42 42 H 1.08998 * 109.93994 * 300.61669 * 14 12 11 43 43 H 1.08994 * 109.04788 * 296.63631 * 15 14 12 44 44 H 1.09009 * 109.03858 * 177.76112 * 15 14 12 45 45 H 1.09004 * 109.03318 * 66.52281 * 16 15 14 46 46 H 1.08999 * 109.03609 * 185.45262 * 16 15 14 47 47 H 0.97005 * 119.99795 * 28.83256 * 19 17 16 48 48 H 0.97001 * 120.00354 * 180.02562 * 23 22 20 49 49 H 1.09007 * 110.62499 * 37.13569 * 30 10 8 50 50 H 1.08999 * 110.62698 * 274.11465 * 30 10 8 51 51 H 1.08003 * 120.46674 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1574 0.0005 5 6 4.3762 2.4497 0.0011 6 7 4.2488 0.0127 0.0005 7 6 3.6082 -1.1497 0.0005 8 6 4.3807 -2.4142 0.0011 9 8 3.7994 -3.4812 0.0007 10 7 5.7280 -2.3807 0.0022 11 6 6.5647 -1.1570 0.0034 12 6 8.0074 -1.6391 0.0858 13 1 8.3046 -1.7638 1.1270 14 6 9.0553 -0.8360 -0.6561 15 6 10.4035 -1.5443 -0.4388 16 6 10.3598 -2.9947 -0.9089 17 6 9.1979 -3.7664 -0.2606 18 1 9.1587 -4.7812 -0.6565 19 7 9.3717 -3.8022 1.1936 20 6 8.8700 -4.8508 1.9175 21 1 8.3466 -5.6516 1.4162 22 6 9.0342 -4.8846 3.2954 23 7 9.6725 -3.9090 3.9061 24 14 8.3505 -6.3153 4.2827 25 1 7.6816 -7.2740 3.3668 26 1 9.4595 -7.0009 4.9938 27 1 7.3665 -5.8083 5.2725 28 6 7.9225 -3.0281 -0.6108 29 1 7.8161 -2.9121 -1.6894 30 6 6.6269 -3.5648 0.0034 31 6 2.2158 -1.1910 -0.0057 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6936 2.1366 0.0004 36 1 4.5632 2.7617 -1.0265 37 1 3.7998 3.2190 0.5151 38 1 5.3263 2.3034 0.5149 39 1 6.3251 -0.5387 0.8685 40 1 6.4085 -0.5940 -0.9167 41 1 9.0989 0.1772 -0.2564 42 1 8.8176 -0.8072 -1.7195 43 1 10.6502 -1.5218 0.6226 44 1 11.1774 -1.0138 -0.9937 45 1 10.2387 -3.0138 -1.9920 46 1 11.2994 -3.4815 -0.6479 47 1 9.8421 -3.0831 1.6437 48 1 9.7876 -3.9327 4.8690 49 1 6.2118 -4.3627 -0.6125 50 1 6.8000 -3.9144 1.0212 51 1 1.6959 -2.1376 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992745583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:43 Heat of formation + Delta-G solvation = -7.400545 kcal Electronic energy + Delta-G solvation = -31184.517006 eV Core-core repulsion = 27275.805366 eV Total energy + Delta-G solvation = -3908.711640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97930 -41.09116 -39.63761 -36.92398 -35.40313 -35.15546 -33.83316 -33.07438 -31.57564 -30.57684 -29.02581 -28.47447 -28.12823 -26.56163 -25.53300 -24.22325 -22.35743 -22.02011 -21.93120 -20.66509 -20.13240 -19.13041 -18.40882 -17.59203 -17.02007 -16.95695 -16.67861 -16.51293 -15.88094 -15.78396 -15.57002 -15.25172 -15.14727 -14.80427 -14.45751 -14.16407 -14.07967 -13.83632 -13.77546 -13.59658 -13.43344 -13.26972 -13.14986 -13.03203 -12.99726 -12.89066 -12.69656 -12.65214 -12.55888 -12.37574 -12.11988 -11.80806 -11.61911 -11.42497 -11.35758 -11.11949 -10.89160 -10.60212 -10.51741 -10.36956 -10.07963 -9.63003 -8.94030 -7.92550 -5.16200 -0.40528 0.18203 1.40997 1.44146 1.51228 1.62247 1.84099 2.55147 2.75773 2.94930 3.38305 3.43421 3.62810 3.66113 3.82189 3.87894 3.97708 4.01432 4.12515 4.26581 4.32985 4.42068 4.45457 4.49439 4.56510 4.63793 4.66235 4.69404 4.71414 4.72893 4.77141 4.80189 4.86413 4.89272 4.98603 5.00371 5.08380 5.09927 5.14143 5.21906 5.24899 5.27184 5.28897 5.41709 5.45977 5.50708 5.57006 5.58949 5.67931 5.77341 6.31251 6.43421 6.70762 7.02289 7.38943 8.16870 8.40125 9.30743 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.003575 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.855721 B = 7831.234212 C = 9171.502125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 C -0.142 4.142 4 C 0.115 3.885 5 C -0.100 4.100 6 N -0.474 5.474 7 C 0.068 3.932 8 C 0.565 3.435 9 O -0.585 6.585 10 N -0.599 5.599 11 C 0.148 3.852 12 C -0.103 4.103 13 H 0.060 0.940 14 C -0.086 4.086 15 C -0.111 4.111 16 C -0.114 4.114 17 C 0.181 3.819 18 H 0.046 0.954 19 N -0.721 5.721 20 C -0.219 4.219 21 H 0.068 0.932 22 C -0.070 4.070 23 N -0.963 5.963 24 Si 0.950 3.050 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.303 1.303 28 C -0.109 4.109 29 H 0.092 0.908 30 C 0.115 3.885 31 C -0.135 4.135 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.179 0.821 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.377 0.623 48 H 0.247 0.753 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 17.877 -13.916 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.025 4.025 5 C -0.157 4.157 6 N -0.188 5.188 7 C -0.069 4.069 8 C 0.353 3.647 9 O -0.466 6.466 10 N -0.329 5.329 11 C 0.026 3.974 12 C -0.123 4.123 13 H 0.078 0.922 14 C -0.124 4.124 15 C -0.149 4.149 16 C -0.152 4.152 17 C 0.071 3.929 18 H 0.064 0.936 19 N -0.361 5.361 20 C -0.351 4.351 21 H 0.086 0.914 22 C -0.262 4.262 23 N -0.615 5.615 24 Si 0.782 3.218 25 H -0.197 1.197 26 H -0.218 1.218 27 H -0.231 1.231 28 C -0.130 4.130 29 H 0.110 0.890 30 C -0.006 4.006 31 C -0.157 4.157 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.197 0.803 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.211 0.789 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.106 17.096 -13.883 25.131 hybrid contribution -0.966 -1.410 1.495 2.271 sum -13.072 15.686 -12.388 23.883 Atomic orbital electron populations 1.20916 0.87051 1.04668 1.04260 1.20726 0.98841 0.91558 0.94227 1.22513 0.94271 1.00052 0.99286 1.22059 0.92542 0.94034 0.93857 1.20833 1.00083 0.90354 1.04435 1.67620 1.41149 0.97815 1.12190 1.20770 0.92011 0.91452 1.02627 1.18172 0.81250 0.88312 0.76917 1.90710 1.69997 1.31964 1.53971 1.49185 1.04435 1.10109 1.69212 1.21692 0.88323 0.84995 1.02370 1.21889 0.93960 0.95752 1.00680 0.92207 1.21211 0.92710 0.98171 1.00277 1.21445 0.97652 0.95136 1.00629 1.21731 0.97399 0.95526 1.00552 1.20121 0.92313 0.96541 0.83915 0.93629 1.42555 1.66738 1.24878 1.01939 1.19499 1.26451 0.99641 0.89531 0.91381 1.25259 1.02880 1.00324 0.97754 1.69772 1.49063 1.34370 1.08263 0.85398 0.77291 0.80106 0.79054 1.19743 1.21832 1.23071 1.22661 0.94206 0.97103 0.99057 0.89030 1.22064 0.89695 0.87513 1.01341 1.22053 0.93114 1.00678 0.99834 0.88894 0.90956 0.88470 0.80324 0.88725 0.87911 0.91098 0.91793 0.89651 0.90625 0.89949 0.94393 0.89879 0.89609 0.92801 0.78907 0.94366 0.92434 0.92180 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.06 71.24 0.72 -0.47 16 2 C -0.05 -0.84 5.91 -19.68 -0.12 -0.96 16 3 C -0.14 -2.17 9.45 22.44 0.21 -1.96 16 4 C 0.12 2.28 6.78 42.68 0.29 2.57 16 5 C -0.10 -1.22 10.17 71.23 0.72 -0.49 16 6 N -0.47 -13.22 6.81 -173.08 -1.18 -14.40 16 7 C 0.07 2.21 6.72 41.91 0.28 2.49 16 8 C 0.56 22.66 7.85 86.89 0.68 23.35 16 9 O -0.59 -26.92 16.62 -3.75 -0.06 -26.98 16 10 N -0.60 -23.20 3.38 -815.83 -2.76 -25.96 16 11 C 0.15 4.78 5.09 85.82 0.44 5.22 16 12 C -0.10 -3.39 2.24 -10.62 -0.02 -3.42 16 13 H 0.06 2.52 6.54 -2.39 -0.02 2.50 16 14 C -0.09 -2.13 5.71 30.37 0.17 -1.95 16 15 C -0.11 -2.99 5.57 30.72 0.17 -2.82 16 16 C -0.11 -3.34 5.52 30.71 0.17 -3.17 16 17 C 0.18 6.76 3.00 44.76 0.13 6.90 16 18 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 19 N -0.72 -34.56 3.83 -324.04 -1.24 -35.81 16 20 C -0.22 -12.02 8.09 84.03 0.68 -11.34 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 23 N -0.96 -58.93 13.06 21.65 0.28 -58.64 16 24 Si 0.95 48.20 29.55 68.60 2.03 50.23 16 25 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 27 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 28 C -0.11 -3.74 2.34 -10.36 -0.02 -3.77 16 29 H 0.09 2.72 8.04 -2.38 -0.02 2.70 16 30 C 0.12 4.78 6.44 85.99 0.55 5.33 16 31 C -0.14 -3.66 9.34 22.61 0.21 -3.45 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.10 0.59 8.10 -2.38 -0.02 0.57 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 2.18 7.33 -2.39 -0.02 2.16 16 40 H 0.09 2.42 7.63 -2.39 -0.02 2.41 16 41 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 42 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 43 H 0.04 1.25 7.02 -2.39 -0.02 1.23 16 44 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.38 19.41 5.95 -92.70 -0.55 18.86 16 48 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.06 2.40 8.07 -2.38 -0.02 2.38 16 50 H 0.06 3.01 6.14 -2.39 -0.01 2.99 16 51 H 0.14 3.79 7.64 -2.91 -0.02 3.77 16 Total: -1.00 -74.64 396.28 3.18 -71.45 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.38 Total: 31.63 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.74 Total: 8.49 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -4.90 Total: -134.81 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -74.64 3.18 -71.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992745583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.054 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds