Wall clock time and date at job start Wed Apr 1 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38611 * 120.32034 * 2 1 4 4 N 1.31494 * 120.89585 * 179.74316 * 3 2 1 5 5 C 1.32741 * 121.64798 * 0.56628 * 4 3 2 6 6 C 1.48163 * 119.72561 * 179.70759 * 5 4 3 7 7 O 1.21523 * 120.00009 * 179.73031 * 6 5 4 8 8 N 1.34780 * 119.99950 * 359.72777 * 6 5 4 9 9 C 1.48651 * 125.78411 * 359.97438 * 8 6 5 10 10 C 1.53060 * 103.44627 * 155.64273 * 9 8 6 11 11 H 1.09000 * 110.55367 * 283.27162 * 10 9 8 12 12 C 1.51616 * 116.68239 * 155.89345 * 10 9 8 13 13 C 1.53815 * 107.09286 * 183.68640 * 12 10 9 14 14 C 1.52714 * 111.60266 * 57.48867 * 13 12 10 15 15 C 1.53842 * 111.71027 * 306.01929 * 14 13 12 16 16 H 1.09002 * 110.00850 * 297.77136 * 15 14 13 17 17 N 1.46499 * 109.94261 * 176.57966 * 15 14 13 18 18 C 1.36933 * 120.00158 * 87.39767 * 17 15 14 19 19 H 1.08002 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99950 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47220 * 59.99703 * 22 20 18 24 24 H 1.48496 * 109.47074 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46850 * 299.99697 * 22 20 18 26 26 C 1.51443 * 107.04448 * 57.19437 * 15 14 13 27 27 H 1.08999 * 110.22681 * 54.37828 * 26 15 14 28 28 C 1.48239 * 125.78156 * 179.97438 * 8 6 5 29 29 C 1.39271 * 120.55284 * 359.43635 * 5 4 3 30 30 C 1.38576 * 120.32956 * 180.02562 * 2 1 3 31 31 C 1.50709 * 120.75233 * 359.97438 * 30 2 1 32 32 H 1.09006 * 109.47139 * 269.97755 * 1 2 3 33 33 H 1.08997 * 109.47641 * 29.97822 * 1 2 3 34 34 H 1.09000 * 109.46918 * 149.98025 * 1 2 3 35 35 H 1.07997 * 119.54816 * 359.97438 * 3 2 1 36 36 H 1.09001 * 110.62722 * 37.15695 * 9 8 6 37 37 H 1.09002 * 110.76719 * 274.19901 * 9 8 6 38 38 H 1.09002 * 109.94352 * 303.10842 * 12 10 9 39 39 H 1.08998 * 109.94179 * 64.26851 * 12 10 9 40 40 H 1.08997 * 109.03798 * 178.14516 * 13 12 10 41 41 H 1.09003 * 109.03718 * 297.00679 * 13 12 10 42 42 H 1.08992 * 109.01974 * 185.43920 * 14 13 12 43 43 H 1.09003 * 108.95693 * 66.55171 * 14 13 12 44 44 H 0.97004 * 119.99576 * 267.40689 * 17 15 14 45 45 H 0.97004 * 119.99702 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.17156 * 295.89460 * 28 8 6 47 47 H 1.09000 * 110.17384 * 57.62722 * 28 8 6 48 48 H 1.08000 * 120.47219 * 180.29488 * 29 5 4 49 49 H 1.08995 * 109.47455 * 269.97679 * 31 30 2 50 50 H 1.08999 * 109.47118 * 29.98171 * 31 30 2 51 51 H 1.09004 * 109.46484 * 149.97922 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1965 0.0000 4 7 3.5216 1.2097 0.0051 5 6 4.2294 0.0868 -0.0008 6 6 5.7097 0.1514 -0.0013 7 8 6.3626 -0.8735 -0.0017 8 7 6.3320 1.3469 -0.0014 9 6 5.6637 2.6748 -0.0015 10 6 6.7150 3.6024 0.6125 11 1 6.7587 3.4689 1.6934 12 6 6.6119 5.0741 0.2629 13 6 7.8151 5.7785 0.9124 14 6 9.1386 5.1785 0.4428 15 6 9.1819 3.6560 0.6594 16 1 9.1033 3.4281 1.7224 17 7 10.4311 3.1102 0.1228 18 6 11.5528 3.0688 0.9071 19 1 11.5166 3.4381 1.9214 20 6 12.7366 2.5522 0.3985 21 7 12.7806 2.1017 -0.8375 22 14 14.2667 2.4950 1.4685 23 1 13.9997 1.6643 2.6701 24 1 15.3885 1.9024 0.6969 25 1 14.6280 3.8725 1.8894 26 6 8.0003 3.0682 -0.0835 27 1 8.0160 3.3841 -1.1266 28 6 7.7989 1.5605 -0.0013 29 6 3.5924 -1.1517 -0.0009 30 6 2.2068 -1.1961 -0.0005 31 6 1.4780 -2.5153 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6646 2.1305 -0.0004 36 1 4.7648 2.6523 0.6146 37 1 5.4234 2.9864 -1.0180 38 1 6.6455 5.2024 -0.8191 39 1 5.6828 5.4856 0.6572 40 1 7.7902 6.8368 0.6528 41 1 7.7440 5.6777 1.9954 42 1 9.9549 5.6400 0.9984 43 1 9.2667 5.3904 -0.6187 44 1 10.4636 2.7784 -0.7881 45 1 13.6080 1.7410 -1.1930 46 1 8.2352 1.1725 0.9192 47 1 8.2499 1.0725 -0.8653 48 1 4.1696 -2.0645 -0.0009 49 1 1.3030 -2.8338 1.0270 50 1 0.5230 -2.4028 -0.5137 51 1 2.0811 -3.2634 -0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992749546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:46 Heat of formation + Delta-G solvation = 9.314427 kcal Electronic energy + Delta-G solvation = -30295.821932 eV Core-core repulsion = 26387.835107 eV Total energy + Delta-G solvation = -3907.986825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.00652 -39.94663 -38.32853 -35.53636 -34.86386 -33.91404 -32.70724 -31.46038 -30.51972 -28.96413 -28.72081 -27.50972 -26.55911 -24.84662 -23.40244 -23.08182 -22.33793 -20.80146 -20.22649 -19.67907 -19.40986 -17.49192 -17.07366 -16.80481 -15.75523 -15.61971 -15.44259 -14.97106 -14.86046 -14.72606 -14.13430 -14.09472 -14.02086 -13.59462 -13.42793 -13.29902 -13.13666 -13.02034 -12.86073 -12.72887 -12.42495 -12.36477 -12.24371 -12.03194 -11.90049 -11.67007 -11.32724 -10.94937 -10.82892 -10.70940 -10.44789 -10.26851 -10.16429 -10.15472 -10.05344 -9.77438 -9.72466 -9.49829 -9.29314 -9.22637 -8.83468 -8.38560 -6.91553 -5.71593 -3.00396 0.44449 0.92271 2.71505 3.00010 3.47611 3.52151 3.52969 3.69107 3.94204 4.28443 4.34243 4.49437 4.51863 4.58178 4.66608 4.89257 4.98014 5.01884 5.04985 5.09321 5.17145 5.24441 5.37382 5.43052 5.47864 5.53239 5.55922 5.58255 5.62431 5.68089 5.71560 5.79516 5.88850 5.95513 5.97982 6.02237 6.06776 6.15849 6.17378 6.27052 6.32033 6.34039 6.51766 6.54735 6.61337 6.67696 6.71270 6.92616 7.14706 7.49109 7.68246 7.74265 8.25279 8.46580 9.57879 10.14951 10.49736 11.50844 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.002586 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.014282 B =10826.481023 C =12249.934737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.124 4.124 3 C 0.098 3.902 4 N -0.453 5.453 5 C 0.086 3.914 6 C 0.577 3.423 7 O -0.537 6.537 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.111 4.111 11 H 0.082 0.918 12 C -0.099 4.099 13 C -0.115 4.115 14 C -0.137 4.137 15 C 0.196 3.804 16 H 0.051 0.949 17 N -0.722 5.722 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.102 4.102 27 H 0.077 0.923 28 C 0.124 3.876 29 C -0.109 4.109 30 C -0.052 4.052 31 C -0.119 4.119 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.148 0.852 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.867 -0.674 1.265 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C -0.062 4.062 4 N -0.164 5.164 5 C -0.052 4.052 6 C 0.363 3.637 7 O -0.414 6.414 8 N -0.331 5.331 9 C -0.006 4.006 10 C -0.130 4.130 11 H 0.101 0.899 12 C -0.137 4.137 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.086 3.914 16 H 0.069 0.931 17 N -0.362 5.362 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.122 4.122 27 H 0.096 0.904 28 C 0.003 3.997 29 C -0.130 4.130 30 C -0.060 4.060 31 C -0.175 4.175 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.178 0.822 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.165 0.835 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.877 -0.535 1.388 27.917 hybrid contribution 0.590 -0.790 0.182 1.002 sum -27.288 -1.325 1.570 27.365 Atomic orbital electron populations 1.20815 0.90028 1.03420 1.02840 1.21004 0.97688 0.93686 1.00235 1.22765 0.89603 0.97573 0.96244 1.67845 1.08138 1.29754 1.10654 1.21140 0.94210 0.89550 1.00252 1.17498 0.85539 0.82781 0.77863 1.90809 1.65837 1.33458 1.51271 1.49034 1.08273 1.05550 1.70282 1.22376 0.96125 0.80698 1.01445 1.22180 0.95305 0.94984 1.00556 0.89944 1.21286 0.98033 0.93532 1.00809 1.21579 0.94954 0.98727 1.00031 1.22345 0.95423 0.98883 1.01131 1.19939 0.85010 0.90517 0.95962 0.93090 1.42401 1.05726 1.73122 1.14955 1.19173 0.88328 1.34120 0.95324 0.91294 1.24728 0.97944 1.01724 0.96459 1.69650 1.26795 1.47200 1.14383 0.86303 0.83091 0.77538 0.79461 1.21303 1.21764 1.21358 1.22157 0.96219 0.93141 1.00707 0.90423 1.21672 0.78194 0.96604 1.03185 1.22008 0.94113 0.99161 0.97746 1.20192 0.93207 0.95862 0.96740 1.20886 1.00406 0.93066 1.03133 0.90563 0.90936 0.90851 0.82172 0.88030 0.91590 0.91748 0.92160 0.92789 0.92645 0.92087 0.92765 0.78220 0.93498 0.90655 0.90778 0.83474 0.90281 0.90564 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.65 36.01 0.35 -0.14 16 2 C -0.12 -0.95 5.91 -104.36 -0.62 -1.57 16 3 C 0.10 0.86 10.86 -17.56 -0.19 0.67 16 4 N -0.45 -5.36 6.62 -9.80 -0.06 -5.43 16 5 C 0.09 1.18 6.72 -83.01 -0.56 0.62 16 6 C 0.58 9.85 7.85 -12.18 -0.10 9.76 16 7 O -0.54 -10.85 16.67 5.35 0.09 -10.77 16 8 N -0.60 -9.76 3.38 -171.86 -0.58 -10.34 16 9 C 0.12 1.53 5.58 -2.82 -0.02 1.51 16 10 C -0.11 -1.48 2.47 -89.89 -0.22 -1.70 16 11 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 12 C -0.10 -1.16 5.70 -27.01 -0.15 -1.31 16 13 C -0.11 -1.51 5.86 -26.45 -0.15 -1.67 16 14 C -0.14 -2.36 5.47 -26.44 -0.14 -2.51 16 15 C 0.20 3.81 2.52 -68.28 -0.17 3.63 16 16 H 0.05 1.03 8.01 -51.93 -0.42 0.62 16 17 N -0.72 -17.85 5.05 -53.77 -0.27 -18.12 16 18 C -0.24 -6.59 9.95 -15.06 -0.15 -6.74 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 22 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.10 -1.70 1.82 -90.35 -0.16 -1.86 16 27 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 28 C 0.12 2.27 6.51 -3.42 -0.02 2.24 16 29 C -0.11 -1.28 9.34 -39.05 -0.36 -1.65 16 30 C -0.05 -0.46 5.91 -104.35 -0.62 -1.07 16 31 C -0.12 -0.67 9.67 36.01 0.35 -0.33 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.07 0.26 6.06 -51.93 -0.31 -0.06 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.10 1.26 5.93 -51.93 -0.31 0.95 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.75 7.99 -51.93 -0.41 0.34 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.38 10.19 7.81 -40.82 -0.32 9.87 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 47 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.31 6.07 -51.93 -0.32 0.00 16 51 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -33.09 400.22 -10.49 -43.58 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.35 Total: 7.63 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.04 Total: -2.58 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.19 Total: -61.60 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.09 -10.49 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992749546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.895 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds