Wall clock time and date at job start Wed Apr 1 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38611 * 120.32034 * 2 1 4 4 N 1.31494 * 120.89585 * 179.74316 * 3 2 1 5 5 C 1.32741 * 121.64798 * 0.56628 * 4 3 2 6 6 C 1.48163 * 119.72561 * 179.70759 * 5 4 3 7 7 O 1.21523 * 120.00009 * 179.73031 * 6 5 4 8 8 N 1.34780 * 119.99950 * 359.72777 * 6 5 4 9 9 C 1.48651 * 125.78411 * 359.97438 * 8 6 5 10 10 C 1.53060 * 103.44627 * 155.64273 * 9 8 6 11 11 H 1.09000 * 110.55367 * 283.27162 * 10 9 8 12 12 C 1.51616 * 116.68239 * 155.89345 * 10 9 8 13 13 C 1.53815 * 107.09286 * 183.68640 * 12 10 9 14 14 C 1.52714 * 111.60266 * 57.48867 * 13 12 10 15 15 C 1.53842 * 111.71027 * 306.01929 * 14 13 12 16 16 H 1.09002 * 110.00850 * 297.77136 * 15 14 13 17 17 N 1.46499 * 109.94261 * 176.57966 * 15 14 13 18 18 C 1.36933 * 120.00158 * 87.39767 * 17 15 14 19 19 H 1.08002 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99950 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47220 * 59.99703 * 22 20 18 24 24 H 1.48496 * 109.47074 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46850 * 299.99697 * 22 20 18 26 26 C 1.51443 * 107.04448 * 57.19437 * 15 14 13 27 27 H 1.08999 * 110.22681 * 54.37828 * 26 15 14 28 28 C 1.48239 * 125.78156 * 179.97438 * 8 6 5 29 29 C 1.39271 * 120.55284 * 359.43635 * 5 4 3 30 30 C 1.38576 * 120.32956 * 180.02562 * 2 1 3 31 31 C 1.50709 * 120.75233 * 359.97438 * 30 2 1 32 32 H 1.09006 * 109.47139 * 269.97755 * 1 2 3 33 33 H 1.08997 * 109.47641 * 29.97822 * 1 2 3 34 34 H 1.09000 * 109.46918 * 149.98025 * 1 2 3 35 35 H 1.07997 * 119.54816 * 359.97438 * 3 2 1 36 36 H 1.09001 * 110.62722 * 37.15695 * 9 8 6 37 37 H 1.09002 * 110.76719 * 274.19901 * 9 8 6 38 38 H 1.09002 * 109.94352 * 303.10842 * 12 10 9 39 39 H 1.08998 * 109.94179 * 64.26851 * 12 10 9 40 40 H 1.08997 * 109.03798 * 178.14516 * 13 12 10 41 41 H 1.09003 * 109.03718 * 297.00679 * 13 12 10 42 42 H 1.08992 * 109.01974 * 185.43920 * 14 13 12 43 43 H 1.09003 * 108.95693 * 66.55171 * 14 13 12 44 44 H 0.97004 * 119.99576 * 267.40689 * 17 15 14 45 45 H 0.97004 * 119.99702 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.17156 * 295.89460 * 28 8 6 47 47 H 1.09000 * 110.17384 * 57.62722 * 28 8 6 48 48 H 1.08000 * 120.47219 * 180.29488 * 29 5 4 49 49 H 1.08995 * 109.47455 * 269.97679 * 31 30 2 50 50 H 1.08999 * 109.47118 * 29.98171 * 31 30 2 51 51 H 1.09004 * 109.46484 * 149.97922 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1965 0.0000 4 7 3.5216 1.2097 0.0051 5 6 4.2294 0.0868 -0.0008 6 6 5.7097 0.1514 -0.0013 7 8 6.3626 -0.8735 -0.0017 8 7 6.3320 1.3469 -0.0014 9 6 5.6637 2.6748 -0.0015 10 6 6.7150 3.6024 0.6125 11 1 6.7587 3.4689 1.6934 12 6 6.6119 5.0741 0.2629 13 6 7.8151 5.7785 0.9124 14 6 9.1386 5.1785 0.4428 15 6 9.1819 3.6560 0.6594 16 1 9.1033 3.4281 1.7224 17 7 10.4311 3.1102 0.1228 18 6 11.5528 3.0688 0.9071 19 1 11.5166 3.4381 1.9214 20 6 12.7366 2.5522 0.3985 21 7 12.7806 2.1017 -0.8375 22 14 14.2667 2.4950 1.4685 23 1 13.9997 1.6643 2.6701 24 1 15.3885 1.9024 0.6969 25 1 14.6280 3.8725 1.8894 26 6 8.0003 3.0682 -0.0835 27 1 8.0160 3.3841 -1.1266 28 6 7.7989 1.5605 -0.0013 29 6 3.5924 -1.1517 -0.0009 30 6 2.2068 -1.1961 -0.0005 31 6 1.4780 -2.5153 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6646 2.1305 -0.0004 36 1 4.7648 2.6523 0.6146 37 1 5.4234 2.9864 -1.0180 38 1 6.6455 5.2024 -0.8191 39 1 5.6828 5.4856 0.6572 40 1 7.7902 6.8368 0.6528 41 1 7.7440 5.6777 1.9954 42 1 9.9549 5.6400 0.9984 43 1 9.2667 5.3904 -0.6187 44 1 10.4636 2.7784 -0.7881 45 1 13.6080 1.7410 -1.1930 46 1 8.2352 1.1725 0.9192 47 1 8.2499 1.0725 -0.8653 48 1 4.1696 -2.0645 -0.0009 49 1 1.3030 -2.8338 1.0270 50 1 0.5230 -2.4028 -0.5137 51 1 2.0811 -3.2634 -0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992749546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:45 Heat of formation + Delta-G solvation = -10.649771 kcal Electronic energy + Delta-G solvation = -30296.687644 eV Core-core repulsion = 26387.835107 eV Total energy + Delta-G solvation = -3908.852537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00605 -41.07555 -39.63147 -37.00858 -35.73221 -35.47218 -33.43173 -33.28024 -31.78670 -30.55764 -29.41628 -28.42491 -27.74161 -26.21652 -25.18442 -23.77070 -23.34589 -22.08808 -21.50848 -21.05195 -20.58493 -19.17094 -18.40396 -17.85613 -16.99811 -16.82155 -16.66398 -16.20317 -15.83209 -15.72629 -15.58061 -15.50716 -15.12620 -15.01289 -14.74386 -14.10388 -14.00787 -13.91882 -13.75968 -13.69231 -13.57529 -13.43505 -13.42101 -13.21765 -12.85630 -12.81274 -12.69581 -12.47544 -12.45508 -12.24992 -12.03201 -11.88912 -11.72853 -11.50721 -11.43298 -11.26944 -10.89590 -10.83373 -10.51460 -10.31926 -10.01035 -9.68524 -8.99440 -7.93650 -5.21629 -0.41750 0.19935 1.44270 1.47717 1.53387 1.61161 1.75645 2.55300 2.77546 2.99295 3.34069 3.38966 3.59379 3.68767 3.75268 3.77573 3.87282 3.90507 4.07216 4.18670 4.25239 4.27304 4.45035 4.49433 4.53046 4.57549 4.62678 4.63996 4.67595 4.69214 4.70743 4.76040 4.80889 4.90382 4.92525 4.95964 5.02044 5.10888 5.11546 5.15797 5.26871 5.29884 5.35237 5.39017 5.40529 5.42926 5.50980 5.53024 5.70270 5.71943 6.28113 6.37668 6.66580 6.99313 7.33932 8.10565 8.33350 9.29707 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.002586 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.014282 B =10826.481023 C =12249.934737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C 0.095 3.905 4 N -0.464 5.464 5 C 0.056 3.944 6 C 0.567 3.433 7 O -0.586 6.586 8 N -0.602 5.602 9 C 0.123 3.877 10 C -0.095 4.095 11 H 0.081 0.919 12 C -0.090 4.090 13 C -0.108 4.108 14 C -0.127 4.127 15 C 0.192 3.808 16 H 0.041 0.959 17 N -0.735 5.735 18 C -0.235 4.235 19 H 0.074 0.926 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.275 1.275 26 C -0.097 4.097 27 H 0.077 0.923 28 C 0.130 3.870 29 C -0.122 4.122 30 C -0.056 4.056 31 C -0.118 4.118 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.198 0.802 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.045 0.955 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.133 0.867 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.476 1.366 2.185 33.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.065 4.065 4 N -0.175 5.175 5 C -0.080 4.080 6 C 0.356 3.644 7 O -0.467 6.467 8 N -0.333 5.333 9 C 0.003 3.997 10 C -0.115 4.115 11 H 0.099 0.901 12 C -0.128 4.128 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.083 3.917 16 H 0.059 0.941 17 N -0.374 5.374 18 C -0.367 4.367 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.799 3.201 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.117 4.117 27 H 0.096 0.904 28 C 0.007 3.993 29 C -0.143 4.143 30 C -0.063 4.063 31 C -0.174 4.174 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.215 0.785 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.151 0.849 49 H 0.108 0.892 50 H 0.118 0.882 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -32.541 1.559 2.344 32.662 hybrid contribution 1.836 -1.455 -0.081 2.344 sum -30.705 0.105 2.263 30.788 Atomic orbital electron populations 1.20950 0.86884 1.05004 1.04150 1.21474 0.99758 0.92671 0.97081 1.23445 0.88528 0.99606 0.94910 1.67703 1.09724 1.28813 1.11293 1.20610 0.92054 0.91118 1.04169 1.18224 0.87356 0.82147 0.76642 1.90756 1.67403 1.35048 1.53505 1.49141 1.07267 1.06876 1.69967 1.22526 0.96161 0.78617 1.02437 1.22192 0.92734 0.96479 1.00074 0.90096 1.21290 0.98830 0.91385 1.01306 1.21526 0.92778 0.99770 1.00517 1.22156 0.97724 0.96445 1.00434 1.20164 0.83831 0.92310 0.95404 0.94113 1.42609 1.06968 1.73663 1.14197 1.19557 0.89204 1.32297 0.95615 0.90797 1.25533 1.01073 1.02600 0.97811 1.69819 1.27065 1.49093 1.16192 0.85268 0.79288 0.77867 0.77715 1.20783 1.22345 1.20120 1.21984 0.97051 0.91847 1.00779 0.90419 1.21399 0.79942 0.97638 1.00285 1.22036 0.95729 0.97986 0.98573 1.20546 0.91909 0.98007 0.95858 1.20977 1.00971 0.91287 1.04126 0.89081 0.89112 0.89617 0.78498 0.86318 0.90469 0.91155 0.88488 0.90506 0.91895 0.94105 0.93636 0.79756 0.94207 0.93619 0.93785 0.84944 0.89172 0.88175 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 9.65 71.24 0.69 0.29 16 2 C -0.11 -1.27 5.91 -19.69 -0.12 -1.39 16 3 C 0.10 1.34 10.86 84.83 0.92 2.26 16 4 N -0.46 -10.20 6.62 -184.91 -1.22 -11.42 16 5 C 0.06 1.58 6.72 41.89 0.28 1.86 16 6 C 0.57 20.74 7.85 86.88 0.68 21.42 16 7 O -0.59 -26.07 16.67 -3.79 -0.06 -26.13 16 8 N -0.60 -20.54 3.38 -815.92 -2.76 -23.30 16 9 C 0.12 3.09 5.58 85.98 0.48 3.57 16 10 C -0.10 -2.40 2.47 -10.32 -0.03 -2.43 16 11 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 12 C -0.09 -1.78 5.70 30.42 0.17 -1.61 16 13 C -0.11 -2.53 5.86 30.77 0.18 -2.35 16 14 C -0.13 -4.34 5.47 30.78 0.17 -4.17 16 15 C 0.19 7.66 2.52 44.77 0.11 7.77 16 16 H 0.04 1.71 8.01 -2.39 -0.02 1.69 16 17 N -0.74 -38.19 5.05 -324.02 -1.64 -39.83 16 18 C -0.23 -13.43 9.95 84.03 0.84 -12.59 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 22 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 C -0.10 -3.31 1.82 -10.62 -0.02 -3.33 16 27 H 0.08 2.68 7.93 -2.39 -0.02 2.66 16 28 C 0.13 5.13 6.51 85.82 0.56 5.69 16 29 C -0.12 -2.93 9.34 22.61 0.21 -2.72 16 30 C -0.06 -0.87 5.91 -19.69 -0.12 -0.99 16 31 C -0.12 -1.05 9.67 71.24 0.69 -0.36 16 32 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.09 0.07 8.09 -2.39 -0.02 0.05 16 34 H 0.09 0.15 6.06 -2.39 -0.01 0.14 16 35 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.12 2.65 5.93 -2.39 -0.01 2.64 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.37 7.99 -2.39 -0.02 1.36 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.37 20.95 7.81 -92.71 -0.72 20.23 16 45 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 47 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.13 3.43 7.64 -2.91 -0.02 3.41 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.10 0.42 6.07 -2.39 -0.01 0.41 16 51 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 Total: -1.00 -78.61 400.22 3.01 -75.60 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.21 Total: 29.85 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.17 Total: 6.72 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -5.34 Total: -136.10 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -78.61 3.01 -75.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992749546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.954 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds