Wall clock time and date at job start Wed Apr 1 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38611 * 120.32144 * 2 1 4 4 N 1.31492 * 120.89747 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64663 * 359.97438 * 4 3 2 6 6 C 1.48169 * 119.72550 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99978 * 174.51231 * 6 5 4 8 8 N 1.34778 * 119.99842 * 354.50613 * 6 5 4 9 9 C 1.48805 * 125.86377 * 359.94622 * 8 6 5 10 10 C 1.53057 * 103.44861 * 155.60915 * 9 8 6 11 11 H 1.09001 * 110.55512 * 284.38077 * 10 9 8 12 12 C 1.51614 * 117.50202 * 156.29056 * 10 9 8 13 13 C 1.53814 * 107.02939 * 183.31627 * 12 10 9 14 14 C 1.52530 * 111.70087 * 57.53577 * 13 12 10 15 15 C 1.51894 * 112.19996 * 306.64265 * 14 13 12 16 16 H 1.09004 * 110.38527 * 176.09154 * 15 14 13 17 17 N 1.46505 * 108.49244 * 296.68029 * 15 14 13 18 18 C 1.36928 * 120.00100 * 272.96242 * 17 15 14 19 19 H 1.08001 * 120.00140 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99972 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00459 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47528 * 90.00064 * 22 20 18 24 24 H 1.48499 * 109.47306 * 210.00262 * 22 20 18 25 25 H 1.48507 * 109.47064 * 329.99993 * 22 20 18 26 26 C 1.51439 * 108.04841 * 55.84266 * 15 14 13 27 27 H 1.08999 * 109.87437 * 55.84072 * 26 15 14 28 28 C 1.48237 * 125.78363 * 179.97438 * 8 6 5 29 29 C 1.39270 * 120.55626 * 0.24608 * 5 4 3 30 30 C 1.50692 * 120.47512 * 179.72439 * 29 5 4 31 31 C 1.38577 * 120.32723 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46575 * 90.00079 * 1 2 3 33 33 H 1.08996 * 109.47184 * 210.00076 * 1 2 3 34 34 H 1.08994 * 109.46992 * 330.00643 * 1 2 3 35 35 H 1.07996 * 119.55024 * 0.02562 * 3 2 1 36 36 H 1.09006 * 110.59395 * 37.13476 * 9 8 6 37 37 H 1.09004 * 110.80009 * 274.18028 * 9 8 6 38 38 H 1.09007 * 109.94064 * 302.69235 * 12 10 9 39 39 H 1.08995 * 109.94569 * 63.84936 * 12 10 9 40 40 H 1.08996 * 109.03835 * 178.10870 * 13 12 10 41 41 H 1.08997 * 109.03531 * 297.04462 * 13 12 10 42 42 H 1.08992 * 109.04483 * 66.51790 * 14 13 12 43 43 H 1.09000 * 109.04120 * 185.47210 * 14 13 12 44 44 H 0.97006 * 119.99428 * 92.96743 * 17 15 14 45 45 H 0.97004 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.16941 * 57.69529 * 28 8 6 47 47 H 1.09000 * 110.17855 * 295.96679 * 28 8 6 48 48 H 1.09001 * 109.47029 * 83.31826 * 30 29 5 49 49 H 1.08999 * 109.47705 * 203.32193 * 30 29 5 50 50 H 1.09007 * 109.47272 * 323.32331 * 30 29 5 51 51 H 1.07998 * 120.75306 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1513 -0.0017 7 8 6.3624 -0.8687 0.0989 8 7 6.3323 1.3414 -0.1145 9 6 5.6653 2.6651 -0.2457 10 6 6.7151 3.6464 0.2812 11 1 6.7672 3.6034 1.3692 12 6 6.6277 5.0849 -0.1898 13 6 7.8315 5.8298 0.4117 14 6 9.1533 5.1850 0.0069 15 6 9.1884 3.7000 0.3241 16 1 10.1155 3.2560 -0.0386 17 7 9.0874 3.5325 1.7761 18 6 10.2174 3.5617 2.5489 19 1 11.1831 3.7085 2.0881 20 6 10.1218 3.4025 3.9245 21 7 11.2079 3.4300 4.6673 22 14 8.4516 3.1477 4.7214 23 1 8.1483 1.6953 4.7820 24 1 8.4687 3.7076 6.0967 25 1 7.4098 3.8379 3.9189 26 6 8.0027 3.0470 -0.3549 27 1 8.0232 3.2615 -1.4234 28 6 7.7992 1.5543 -0.1294 29 6 3.5924 -1.1517 -0.0052 30 6 4.3977 -2.4254 -0.0114 31 6 2.2068 -1.1961 -0.0005 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 1.6647 2.1306 0.0004 36 1 4.7637 2.7025 0.3657 37 1 5.4298 2.8782 -1.2884 38 1 6.6728 5.1231 -1.2782 39 1 5.6983 5.5346 0.1595 40 1 7.8194 6.8632 0.0654 41 1 7.7499 5.8182 1.4985 42 1 9.2946 5.3075 -1.0669 43 1 9.9678 5.6841 0.5318 44 1 8.2200 3.4009 2.1899 45 1 11.1410 3.3191 5.6287 46 1 8.2531 0.9864 -0.9416 47 1 8.2322 1.2556 0.8252 48 1 4.6940 -2.6729 1.0079 49 1 3.7939 -3.2351 -0.4211 50 1 5.2880 -2.2894 -0.6256 51 1 1.6845 -2.1414 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992753947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:34 Heat of formation + Delta-G solvation = 23.875922 kcal Electronic energy + Delta-G solvation = -31262.290134 eV Core-core repulsion = 27354.934743 eV Total energy + Delta-G solvation = -3907.355391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08534 -40.07857 -38.45202 -35.74254 -34.04273 -33.71162 -33.49986 -31.53177 -30.59955 -29.52577 -28.04691 -27.60902 -26.84631 -24.85575 -23.72021 -22.85385 -21.78183 -21.10147 -20.81613 -19.89747 -18.60578 -17.74491 -17.47503 -16.99516 -15.81320 -15.72790 -15.12491 -14.85786 -14.74516 -14.47224 -14.38605 -14.14003 -13.95382 -13.58928 -13.42613 -13.31320 -13.00117 -12.93547 -12.77296 -12.65801 -12.59531 -12.38267 -12.18690 -12.04612 -11.94411 -11.84197 -11.47361 -11.30864 -10.92580 -10.73610 -10.47630 -10.32462 -10.05963 -10.02109 -10.00599 -9.87647 -9.48055 -9.46135 -9.25987 -9.11806 -8.86890 -8.39030 -7.22302 -5.73678 -3.07923 0.44772 0.94719 2.70492 2.97138 3.38263 3.42605 3.47933 3.65271 3.95453 4.34573 4.39299 4.52060 4.59179 4.61912 4.65907 4.84230 4.97770 4.99509 5.11764 5.13053 5.31453 5.33844 5.44314 5.47294 5.50571 5.52260 5.59263 5.62743 5.65575 5.73974 5.78543 5.83073 5.88496 5.89735 5.93856 6.00760 6.05211 6.12476 6.21182 6.24536 6.33478 6.36376 6.40757 6.53568 6.60429 6.68819 6.78076 6.89762 6.97524 7.48469 7.65009 8.03592 8.22261 8.45821 9.24651 9.97391 10.17222 11.45012 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003470 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.786154 B = 8067.989489 C = 8673.396567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.115 4.115 3 C 0.086 3.914 4 N -0.444 5.444 5 C 0.074 3.926 6 C 0.579 3.421 7 O -0.532 6.532 8 N -0.599 5.599 9 C 0.111 3.889 10 C -0.114 4.114 11 H 0.086 0.914 12 C -0.096 4.096 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.194 3.806 16 H 0.063 0.937 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.876 3.124 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.109 4.109 27 H 0.079 0.921 28 C 0.116 3.884 29 C -0.068 4.068 30 C -0.118 4.118 31 C -0.090 4.090 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.361 0.639 45 H 0.258 0.742 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.100 0.900 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.253 -4.141 -14.337 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.075 4.075 4 N -0.154 5.154 5 C -0.064 4.064 6 C 0.366 3.634 7 O -0.410 6.410 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.133 4.133 11 H 0.105 0.895 12 C -0.134 4.134 13 C -0.148 4.148 14 C -0.169 4.169 15 C 0.085 3.915 16 H 0.081 0.919 17 N -0.390 5.390 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.583 5.583 22 Si 0.707 3.293 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.129 4.129 27 H 0.097 0.903 28 C -0.005 4.005 29 C -0.071 4.071 30 C -0.174 4.174 31 C -0.116 4.116 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.196 0.804 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.119 0.881 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.185 -3.960 -14.184 25.801 hybrid contribution -1.689 -0.836 0.815 2.053 sum -22.874 -4.796 -13.370 26.925 Atomic orbital electron populations 1.20772 0.89885 1.03449 1.02831 1.21154 0.97768 0.94132 0.98631 1.22753 0.89574 0.97715 0.97416 1.67793 1.08244 1.29586 1.09763 1.20980 0.94161 0.89173 1.02081 1.17472 0.85601 0.82596 0.77730 1.90738 1.66068 1.33044 1.51146 1.49002 1.07971 1.06234 1.69874 1.22455 0.96709 0.80486 1.01411 1.22195 0.94803 0.94840 1.01489 0.89547 1.21253 0.98488 0.93669 1.00005 1.21404 0.94069 0.97761 1.01584 1.21776 0.97482 0.98645 0.99044 1.19534 0.94843 0.92369 0.84779 0.91949 1.42957 1.06126 1.88485 1.01462 1.19071 0.87362 1.41437 0.88912 0.89130 1.24609 0.96043 1.02172 0.96100 1.69689 1.26291 1.57293 1.04999 0.86687 0.85402 0.78121 0.79096 1.21158 1.21776 1.20457 1.22183 0.97343 0.93210 1.00188 0.90256 1.21735 0.79202 0.96325 1.03216 1.20930 0.94255 0.96332 0.95536 1.21070 1.00352 0.91810 1.04217 1.21423 0.92911 0.98538 0.98715 0.90548 0.91110 0.90828 0.82209 0.87583 0.91728 0.92028 0.92178 0.93024 0.91549 0.93857 0.91287 0.80394 0.93147 0.91371 0.89724 0.90223 0.92292 0.88130 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.03 36.01 0.36 -0.18 16 2 C -0.11 -0.95 5.91 -104.36 -0.62 -1.56 16 3 C 0.09 0.82 10.86 -17.56 -0.19 0.63 16 4 N -0.44 -5.64 6.61 -9.80 -0.06 -5.70 16 5 C 0.07 1.05 6.71 -83.01 -0.56 0.49 16 6 C 0.58 9.76 7.80 -12.18 -0.09 9.66 16 7 O -0.53 -10.01 13.65 5.36 0.07 -9.93 16 8 N -0.60 -9.72 3.39 -171.73 -0.58 -10.31 16 9 C 0.11 1.55 5.73 -2.74 -0.02 1.53 16 10 C -0.11 -1.70 2.35 -89.90 -0.21 -1.91 16 11 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 12 C -0.10 -1.24 5.75 -27.01 -0.16 -1.39 16 13 C -0.11 -1.66 5.64 -26.55 -0.15 -1.81 16 14 C -0.13 -2.12 5.38 -27.53 -0.15 -2.27 16 15 C 0.19 3.55 2.92 -69.28 -0.20 3.35 16 16 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 17 N -0.75 -16.99 3.93 -54.74 -0.22 -17.20 16 18 C -0.24 -6.57 10.42 -15.06 -0.16 -6.73 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 22 Si 0.88 22.66 27.74 -169.99 -4.71 17.95 16 23 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 26 C -0.11 -1.69 2.12 -90.35 -0.19 -1.88 16 27 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 28 C 0.12 1.97 6.56 -3.43 -0.02 1.95 16 29 C -0.07 -0.82 5.93 -104.09 -0.62 -1.43 16 30 C -0.12 -1.35 8.74 36.00 0.31 -1.04 16 31 C -0.09 -0.83 9.51 -39.31 -0.37 -1.20 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.11 1.48 5.78 -51.93 -0.30 1.18 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.00 -51.93 -0.42 0.29 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.36 8.33 3.39 -40.82 -0.14 8.19 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.70 7.72 -51.93 -0.40 1.30 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 50 H 0.10 1.37 5.85 -51.93 -0.30 1.06 16 51 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -33.10 390.37 -10.16 -43.26 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.19 Total: 8.49 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.12 Total: -3.70 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.09 Total: -61.95 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.10 -10.16 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992753947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.138 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds