Wall clock time and date at job start Wed Apr 1 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38611 * 120.32144 * 2 1 4 4 N 1.31492 * 120.89747 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64663 * 359.97438 * 4 3 2 6 6 C 1.48169 * 119.72550 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99978 * 174.51231 * 6 5 4 8 8 N 1.34778 * 119.99842 * 354.50613 * 6 5 4 9 9 C 1.48805 * 125.86377 * 359.94622 * 8 6 5 10 10 C 1.53057 * 103.44861 * 155.60915 * 9 8 6 11 11 H 1.09001 * 110.55512 * 284.38077 * 10 9 8 12 12 C 1.51614 * 117.50202 * 156.29056 * 10 9 8 13 13 C 1.53814 * 107.02939 * 183.31627 * 12 10 9 14 14 C 1.52530 * 111.70087 * 57.53577 * 13 12 10 15 15 C 1.51894 * 112.19996 * 306.64265 * 14 13 12 16 16 H 1.09004 * 110.38527 * 176.09154 * 15 14 13 17 17 N 1.46505 * 108.49244 * 296.68029 * 15 14 13 18 18 C 1.36928 * 120.00100 * 272.96242 * 17 15 14 19 19 H 1.08001 * 120.00140 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99972 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00459 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47528 * 90.00064 * 22 20 18 24 24 H 1.48499 * 109.47306 * 210.00262 * 22 20 18 25 25 H 1.48507 * 109.47064 * 329.99993 * 22 20 18 26 26 C 1.51439 * 108.04841 * 55.84266 * 15 14 13 27 27 H 1.08999 * 109.87437 * 55.84072 * 26 15 14 28 28 C 1.48237 * 125.78363 * 179.97438 * 8 6 5 29 29 C 1.39270 * 120.55626 * 0.24608 * 5 4 3 30 30 C 1.50692 * 120.47512 * 179.72439 * 29 5 4 31 31 C 1.38577 * 120.32723 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46575 * 90.00079 * 1 2 3 33 33 H 1.08996 * 109.47184 * 210.00076 * 1 2 3 34 34 H 1.08994 * 109.46992 * 330.00643 * 1 2 3 35 35 H 1.07996 * 119.55024 * 0.02562 * 3 2 1 36 36 H 1.09006 * 110.59395 * 37.13476 * 9 8 6 37 37 H 1.09004 * 110.80009 * 274.18028 * 9 8 6 38 38 H 1.09007 * 109.94064 * 302.69235 * 12 10 9 39 39 H 1.08995 * 109.94569 * 63.84936 * 12 10 9 40 40 H 1.08996 * 109.03835 * 178.10870 * 13 12 10 41 41 H 1.08997 * 109.03531 * 297.04462 * 13 12 10 42 42 H 1.08992 * 109.04483 * 66.51790 * 14 13 12 43 43 H 1.09000 * 109.04120 * 185.47210 * 14 13 12 44 44 H 0.97006 * 119.99428 * 92.96743 * 17 15 14 45 45 H 0.97004 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.16941 * 57.69529 * 28 8 6 47 47 H 1.09000 * 110.17855 * 295.96679 * 28 8 6 48 48 H 1.09001 * 109.47029 * 83.31826 * 30 29 5 49 49 H 1.08999 * 109.47705 * 203.32193 * 30 29 5 50 50 H 1.09007 * 109.47272 * 323.32331 * 30 29 5 51 51 H 1.07998 * 120.75306 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1513 -0.0017 7 8 6.3624 -0.8687 0.0989 8 7 6.3323 1.3414 -0.1145 9 6 5.6653 2.6651 -0.2457 10 6 6.7151 3.6464 0.2812 11 1 6.7672 3.6034 1.3692 12 6 6.6277 5.0849 -0.1898 13 6 7.8315 5.8298 0.4117 14 6 9.1533 5.1850 0.0069 15 6 9.1884 3.7000 0.3241 16 1 10.1155 3.2560 -0.0386 17 7 9.0874 3.5325 1.7761 18 6 10.2174 3.5617 2.5489 19 1 11.1831 3.7085 2.0881 20 6 10.1218 3.4025 3.9245 21 7 11.2079 3.4300 4.6673 22 14 8.4516 3.1477 4.7214 23 1 8.1483 1.6953 4.7820 24 1 8.4687 3.7076 6.0967 25 1 7.4098 3.8379 3.9189 26 6 8.0027 3.0470 -0.3549 27 1 8.0232 3.2615 -1.4234 28 6 7.7992 1.5543 -0.1294 29 6 3.5924 -1.1517 -0.0052 30 6 4.3977 -2.4254 -0.0114 31 6 2.2068 -1.1961 -0.0005 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 1.6647 2.1306 0.0004 36 1 4.7637 2.7025 0.3657 37 1 5.4298 2.8782 -1.2884 38 1 6.6728 5.1231 -1.2782 39 1 5.6983 5.5346 0.1595 40 1 7.8194 6.8632 0.0654 41 1 7.7499 5.8182 1.4985 42 1 9.2946 5.3075 -1.0669 43 1 9.9678 5.6841 0.5318 44 1 8.2200 3.4009 2.1899 45 1 11.1410 3.3191 5.6287 46 1 8.2531 0.9864 -0.9416 47 1 8.2322 1.2556 0.8252 48 1 4.6940 -2.6729 1.0079 49 1 3.7939 -3.2351 -0.4211 50 1 5.2880 -2.2894 -0.6256 51 1 1.6845 -2.1414 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992753947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:33 Heat of formation + Delta-G solvation = 4.055802 kcal Electronic energy + Delta-G solvation = -31263.149599 eV Core-core repulsion = 27354.934743 eV Total energy + Delta-G solvation = -3908.214856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10334 -41.20605 -39.65503 -37.13897 -35.39793 -34.74036 -34.42418 -33.38412 -31.82343 -31.17881 -28.91510 -28.40316 -28.05382 -26.12640 -25.01898 -24.32304 -22.72348 -22.32799 -21.96551 -20.99641 -20.06053 -19.74378 -18.56833 -17.91474 -17.05765 -16.90169 -16.60422 -16.06719 -16.01246 -15.63920 -15.58537 -15.40647 -14.99953 -14.90406 -14.53075 -14.43463 -14.23563 -14.06793 -13.77648 -13.71501 -13.57061 -13.39556 -13.35530 -13.24783 -13.14352 -13.00536 -12.82149 -12.64260 -12.53990 -12.34843 -12.14760 -11.94647 -11.68180 -11.45479 -11.23266 -11.12028 -10.95693 -10.66437 -10.60771 -10.26425 -9.98676 -9.57994 -9.27219 -8.03993 -5.32872 -0.40622 0.20383 1.26235 1.30817 1.35456 1.63898 1.80690 2.42469 2.75364 3.02312 3.28473 3.33431 3.57268 3.61719 3.72979 3.78799 3.84104 3.88123 3.95318 4.16512 4.20027 4.30716 4.37161 4.45343 4.47085 4.57231 4.57784 4.60878 4.66558 4.71832 4.76842 4.84488 4.86647 4.86890 4.95588 4.99309 5.03445 5.08712 5.11707 5.18496 5.24462 5.29255 5.32498 5.34380 5.43186 5.46719 5.59379 5.64554 5.69198 5.80561 6.22014 6.40119 6.67533 7.03174 7.08554 7.87187 8.04004 9.18471 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003470 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.786154 B = 8067.989489 C = 8673.396567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C 0.080 3.920 4 N -0.459 5.459 5 C 0.039 3.961 6 C 0.567 3.433 7 O -0.568 6.568 8 N -0.605 5.605 9 C 0.121 3.879 10 C -0.108 4.108 11 H 0.050 0.950 12 C -0.085 4.085 13 C -0.109 4.109 14 C -0.123 4.123 15 C 0.185 3.815 16 H 0.048 0.952 17 N -0.747 5.747 18 C -0.211 4.211 19 H 0.062 0.938 20 C -0.061 4.061 21 N -0.984 5.984 22 Si 0.937 3.063 23 H -0.295 1.295 24 H -0.292 1.292 25 H -0.255 1.255 26 C -0.100 4.100 27 H 0.115 0.885 28 C 0.118 3.882 29 C -0.079 4.079 30 C -0.113 4.113 31 C -0.090 4.090 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.192 0.808 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.362 0.638 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.330 -3.173 -16.839 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.081 4.081 4 N -0.169 5.169 5 C -0.096 4.096 6 C 0.356 3.644 7 O -0.449 6.449 8 N -0.336 5.336 9 C 0.000 4.000 10 C -0.127 4.127 11 H 0.069 0.931 12 C -0.123 4.123 13 C -0.147 4.147 14 C -0.163 4.163 15 C 0.077 3.923 16 H 0.066 0.934 17 N -0.392 5.392 18 C -0.343 4.343 19 H 0.080 0.920 20 C -0.252 4.252 21 N -0.636 5.636 22 Si 0.766 3.234 23 H -0.222 1.222 24 H -0.219 1.219 25 H -0.180 1.180 26 C -0.119 4.119 27 H 0.133 0.867 28 C -0.005 4.005 29 C -0.083 4.083 30 C -0.170 4.170 31 C -0.115 4.115 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.209 0.791 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.197 0.803 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.091 0.909 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.297 -2.962 -16.748 31.317 hybrid contribution -0.148 -1.176 1.490 1.904 sum -26.445 -4.137 -15.258 30.810 Atomic orbital electron populations 1.20883 0.86901 1.04778 1.04163 1.21594 0.99724 0.93190 0.95571 1.23381 0.88649 0.99703 0.96353 1.67667 1.09768 1.29051 1.10463 1.20651 0.92570 0.90712 1.05714 1.18117 0.87163 0.82197 0.76918 1.90709 1.67301 1.34175 1.52688 1.49134 1.07485 1.07188 1.69820 1.22518 0.96024 0.78672 1.02772 1.22161 0.94546 0.96718 0.99307 0.93148 1.21236 0.98113 0.91307 1.01645 1.21391 0.94094 0.99490 0.99677 1.21642 0.97649 0.96132 1.00892 1.19810 0.95840 0.94413 0.82225 0.93355 1.42993 1.04559 1.88330 1.03301 1.19072 0.87853 1.38179 0.89185 0.91980 1.25269 0.99271 1.03763 0.96931 1.69845 1.28532 1.60198 1.05024 0.85681 0.82094 0.77373 0.78235 1.22237 1.21875 1.17980 1.22084 0.96275 0.91790 1.01752 0.86696 1.21591 0.80271 0.97595 1.01005 1.21070 0.95732 0.95475 0.95974 1.20960 0.99934 0.93086 1.02971 1.21783 0.91569 1.00465 0.97728 0.88942 0.89948 0.89439 0.79090 0.87324 0.89294 0.88951 0.90165 0.90532 0.94954 0.90275 0.94329 0.80322 0.93588 0.91018 0.94089 0.91656 0.89214 0.90862 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.03 71.24 0.71 0.21 16 2 C -0.10 -1.23 5.91 -19.69 -0.12 -1.35 16 3 C 0.08 1.25 10.86 84.83 0.92 2.17 16 4 N -0.46 -10.72 6.61 -184.91 -1.22 -11.95 16 5 C 0.04 1.10 6.71 41.89 0.28 1.38 16 6 C 0.57 19.72 7.80 86.88 0.68 20.39 16 7 O -0.57 -22.78 13.65 -3.75 -0.05 -22.83 16 8 N -0.60 -19.69 3.39 -815.52 -2.76 -22.45 16 9 C 0.12 3.10 5.73 85.95 0.49 3.59 16 10 C -0.11 -2.99 2.35 -10.33 -0.02 -3.01 16 11 H 0.05 1.79 5.88 -2.39 -0.01 1.77 16 12 C -0.09 -1.84 5.75 30.41 0.17 -1.67 16 13 C -0.11 -2.99 5.64 30.71 0.17 -2.82 16 14 C -0.12 -3.87 5.38 30.07 0.16 -3.71 16 15 C 0.18 6.78 2.92 44.12 0.13 6.91 16 16 H 0.05 1.89 8.09 -2.38 -0.02 1.87 16 17 N -0.75 -35.05 3.93 -327.11 -1.29 -36.34 16 18 C -0.21 -12.22 10.42 84.03 0.88 -11.35 16 19 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 20 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 21 N -0.98 -65.10 13.97 21.65 0.30 -64.79 16 22 Si 0.94 48.69 27.74 68.60 1.90 50.59 16 23 H -0.29 -15.69 7.11 99.48 0.71 -14.99 16 24 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 25 H -0.25 -12.08 6.52 99.48 0.65 -11.43 16 26 C -0.10 -2.95 2.12 -10.62 -0.02 -2.97 16 27 H 0.12 2.68 7.97 -2.39 -0.02 2.66 16 28 C 0.12 4.08 6.56 85.82 0.56 4.64 16 29 C -0.08 -1.84 5.93 -19.52 -0.12 -1.96 16 30 C -0.11 -2.62 8.74 71.23 0.62 -2.00 16 31 C -0.09 -1.37 9.51 22.45 0.21 -1.16 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.08 0.26 8.09 -2.39 -0.02 0.24 16 34 H 0.09 0.23 8.09 -2.39 -0.02 0.21 16 35 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.11 2.79 5.78 -2.38 -0.01 2.77 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.09 1.53 8.00 -2.38 -0.02 1.51 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.36 17.03 3.39 -92.70 -0.31 16.72 16 45 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.04 1.76 7.72 -2.39 -0.02 1.74 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 50 H 0.07 2.12 5.85 -2.38 -0.01 2.10 16 51 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -79.20 390.37 3.63 -75.58 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.56 Total: 28.18 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.19 Total: 4.03 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -4.97 Total: -135.53 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.90 Total: 50.59 kcal Total: -79.20 3.63 -75.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992753947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.631 kcal (2) G-P(sol) polarization free energy of solvation -79.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds