Wall clock time and date at job start Wed Apr 1 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38599 * 120.32380 * 2 1 4 4 N 1.31497 * 120.89966 * 179.71899 * 3 2 1 5 5 C 1.32743 * 121.64348 * 0.52744 * 4 3 2 6 6 C 1.48162 * 119.72582 * 179.75185 * 5 4 3 7 7 O 1.21512 * 120.00402 * 173.95624 * 6 5 4 8 8 N 1.34783 * 119.99975 * 353.96341 * 6 5 4 9 9 C 1.48656 * 125.78010 * 359.97004 * 8 6 5 10 10 C 1.53063 * 103.58526 * 155.58188 * 9 8 6 11 11 H 1.09004 * 110.55644 * 284.41866 * 10 9 8 12 12 C 1.51069 * 117.24101 * 156.06422 * 10 9 8 13 13 C 1.53809 * 107.49145 * 184.28757 * 12 10 9 14 14 C 1.52524 * 111.70812 * 57.42163 * 13 12 10 15 15 C 1.53845 * 111.65892 * 305.96310 * 14 13 12 16 16 H 1.08996 * 109.93707 * 297.80928 * 15 14 13 17 17 N 1.46498 * 110.01031 * 176.61913 * 15 14 13 18 18 C 1.36934 * 120.00301 * 87.35468 * 17 15 14 19 19 H 1.07997 * 120.00138 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00530 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99516 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00399 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47206 * 89.99739 * 22 20 18 24 24 H 1.48501 * 109.46923 * 210.00102 * 22 20 18 25 25 H 1.48494 * 109.46844 * 329.99791 * 22 20 18 26 26 C 1.51437 * 107.04558 * 57.19451 * 15 14 13 27 27 H 1.08999 * 109.87246 * 54.68994 * 26 15 14 28 28 C 1.48237 * 125.78663 * 180.02562 * 8 6 5 29 29 C 1.39279 * 120.55324 * 359.46670 * 5 4 3 30 30 C 1.50700 * 120.46869 * 180.23590 * 29 5 4 31 31 C 1.38590 * 120.32374 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46914 * 270.02649 * 1 2 3 33 33 H 1.08995 * 109.47199 * 30.02446 * 1 2 3 34 34 H 1.09001 * 109.47170 * 150.02939 * 1 2 3 35 35 H 1.08001 * 119.55042 * 359.96955 * 3 2 1 36 36 H 1.09004 * 110.63206 * 274.15010 * 9 8 6 37 37 H 1.09002 * 110.62801 * 37.01361 * 9 8 6 38 38 H 1.09005 * 109.80336 * 64.70701 * 12 10 9 39 39 H 1.09007 * 109.68740 * 303.80142 * 12 10 9 40 40 H 1.09000 * 109.02942 * 296.84865 * 13 12 10 41 41 H 1.08999 * 109.03325 * 177.99893 * 13 12 10 42 42 H 1.08992 * 109.04336 * 185.39484 * 14 13 12 43 43 H 1.09003 * 109.03826 * 66.51888 * 14 13 12 44 44 H 0.97000 * 120.00168 * 267.36191 * 17 15 14 45 45 H 0.96997 * 119.99797 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.16809 * 295.87362 * 28 8 6 47 47 H 1.08998 * 110.17656 * 57.67214 * 28 8 6 48 48 H 1.08998 * 109.46826 * 83.32134 * 30 29 5 49 49 H 1.08993 * 109.47082 * 203.32064 * 30 29 5 50 50 H 1.08997 * 109.47129 * 323.32015 * 30 29 5 51 51 H 1.08001 * 120.75425 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0055 5 6 4.2295 0.0866 0.0009 6 6 5.7097 0.1511 0.0019 7 8 6.3622 -0.8684 0.1085 8 7 6.3325 1.3406 -0.1153 9 6 5.6646 2.6616 -0.2530 10 6 6.7099 3.6493 0.2708 11 1 6.7607 3.6116 1.3590 12 6 6.6161 5.0771 -0.2138 13 6 7.8233 5.8396 0.3581 14 6 9.1435 5.1961 -0.0534 15 6 9.1862 3.7028 0.3142 16 1 9.1102 3.5838 1.3950 17 7 10.4330 3.1034 -0.1677 18 6 11.5569 3.1395 0.6138 19 1 11.5241 3.6095 1.5856 20 6 12.7386 2.5720 0.1570 21 7 12.7788 1.9995 -1.0275 22 14 14.2715 2.6206 1.2234 23 1 14.3142 1.4114 2.0843 24 1 15.4767 2.6540 0.3564 25 1 14.2422 3.8353 2.0771 26 6 8.0017 3.0451 -0.3623 27 1 8.0228 3.2541 -1.4319 28 6 7.7994 1.5533 -0.1299 29 6 3.5923 -1.1519 0.0011 30 6 4.3977 -2.4256 0.0012 31 6 2.2067 -1.1963 0.0005 32 1 -0.3633 0.0005 1.0277 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3633 -0.8903 -0.5134 35 1 1.6647 2.1305 -0.0005 36 1 5.4317 2.8671 -1.2978 37 1 4.7609 2.7002 0.3554 38 1 5.6894 5.5276 0.1417 39 1 6.6453 5.0978 -1.3032 40 1 7.7557 5.8478 1.4459 41 1 7.7998 6.8668 -0.0059 42 1 9.9619 5.7100 0.4505 43 1 9.2694 5.3008 -1.1311 44 1 10.4626 2.6810 -1.0403 45 1 13.6045 1.6033 -1.3469 46 1 8.2312 1.2602 0.8270 47 1 8.2541 0.9818 -0.9390 48 1 4.6929 -2.6687 1.0219 49 1 3.7942 -3.2371 -0.4055 50 1 5.2884 -2.2923 -0.6127 51 1 1.6844 -2.1416 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992753949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:38 Heat of formation + Delta-G solvation = 12.700919 kcal Electronic energy + Delta-G solvation = -30561.318176 eV Core-core repulsion = 26653.478201 eV Total energy + Delta-G solvation = -3907.839975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05388 -39.89131 -38.33612 -35.59716 -34.07195 -33.92404 -33.56590 -31.46856 -30.55155 -28.94970 -27.93827 -27.59237 -26.61211 -24.82323 -23.78822 -23.06390 -21.76641 -20.79804 -20.28182 -19.89181 -19.53269 -17.56574 -17.06411 -16.94548 -15.74793 -15.68979 -15.09817 -14.87174 -14.77721 -14.46191 -14.11811 -14.05546 -13.92607 -13.56014 -13.44709 -13.31340 -13.02639 -12.92674 -12.79921 -12.67623 -12.44516 -12.39264 -12.21319 -12.05666 -11.90943 -11.68797 -11.32562 -10.95285 -10.84567 -10.70678 -10.43826 -10.23358 -10.15151 -10.10238 -9.94491 -9.87141 -9.69794 -9.40990 -9.25620 -9.11262 -8.84418 -8.34311 -6.92047 -5.72390 -3.01088 0.45203 0.94523 2.72760 3.01391 3.46812 3.51849 3.53269 3.66649 3.96041 4.35070 4.39662 4.52406 4.58994 4.61307 4.69188 4.84564 4.96521 5.02709 5.12129 5.12656 5.31707 5.43731 5.45273 5.48298 5.50977 5.56584 5.62560 5.66202 5.71669 5.76993 5.83245 5.88970 5.90799 5.98651 6.01903 6.05489 6.15554 6.16815 6.18514 6.27094 6.33500 6.43481 6.51993 6.55828 6.61043 6.67736 6.71102 6.92521 7.14356 7.48864 7.69805 7.74302 8.26370 8.45836 9.57219 10.14299 10.49046 11.50149 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002770 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.934209 B =10105.662965 C =11649.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 C 0.085 3.915 4 N -0.444 5.444 5 C 0.075 3.925 6 C 0.577 3.423 7 O -0.531 6.531 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.109 4.109 11 H 0.082 0.918 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.196 3.804 16 H 0.051 0.949 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.104 4.104 27 H 0.076 0.924 28 C 0.125 3.875 29 C -0.068 4.068 30 C -0.118 4.118 31 C -0.090 4.090 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.101 0.899 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.592 -0.542 1.022 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.075 4.075 4 N -0.154 5.154 5 C -0.063 4.063 6 C 0.364 3.636 7 O -0.408 6.408 8 N -0.332 5.332 9 C -0.011 4.011 10 C -0.129 4.129 11 H 0.100 0.900 12 C -0.136 4.136 13 C -0.152 4.152 14 C -0.178 4.178 15 C 0.086 3.914 16 H 0.069 0.931 17 N -0.362 5.362 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.124 4.124 27 H 0.094 0.906 28 C 0.004 3.996 29 C -0.071 4.071 30 C -0.175 4.175 31 C -0.116 4.116 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.178 0.822 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.120 0.880 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.605 -0.361 1.213 26.635 hybrid contribution 0.454 -0.777 0.189 0.920 sum -26.151 -1.139 1.403 26.213 Atomic orbital electron populations 1.20771 0.89919 1.03392 1.02851 1.21149 0.97743 0.94149 0.98735 1.22744 0.89599 0.97674 0.97484 1.67793 1.08196 1.29582 1.09857 1.21015 0.94221 0.89133 1.01927 1.17473 0.85521 0.82667 0.77921 1.90755 1.66030 1.33032 1.51001 1.49045 1.08219 1.06179 1.69766 1.22423 0.96528 0.80651 1.01501 1.22111 0.95240 0.94734 1.00820 0.90010 1.21156 0.98051 0.93747 1.00604 1.21531 0.94893 0.98438 1.00354 1.22308 0.95464 0.98805 1.01225 1.19924 0.85020 0.90122 0.96359 0.93126 1.42403 1.05770 1.67481 1.20545 1.19218 0.88297 1.30701 0.98634 0.91243 1.24730 0.97954 1.01219 0.96988 1.69658 1.26828 1.43136 1.18397 0.86227 0.83210 0.77615 0.79366 1.21752 1.21863 1.20835 1.22240 0.96211 0.93010 1.00931 0.90556 1.21654 0.78242 0.96655 1.03032 1.20942 0.94243 0.96386 0.95508 1.21073 1.00448 0.91795 1.04176 1.21425 0.92921 0.98531 0.98682 0.90558 0.90851 0.91138 0.82241 0.91860 0.87519 0.92159 0.91801 0.92630 0.92777 0.92085 0.92771 0.78234 0.93553 0.90692 0.90813 0.90260 0.92292 0.88039 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.03 36.01 0.36 -0.12 16 2 C -0.12 -0.89 5.91 -104.36 -0.62 -1.51 16 3 C 0.09 0.75 10.86 -17.56 -0.19 0.56 16 4 N -0.44 -5.30 6.60 -9.80 -0.06 -5.36 16 5 C 0.07 1.02 6.71 -83.01 -0.56 0.47 16 6 C 0.58 9.59 7.79 -12.18 -0.09 9.49 16 7 O -0.53 -10.07 13.65 5.35 0.07 -9.99 16 8 N -0.60 -9.63 3.38 -171.86 -0.58 -10.21 16 9 C 0.11 1.46 5.71 -2.82 -0.02 1.45 16 10 C -0.11 -1.46 2.50 -89.93 -0.22 -1.69 16 11 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 12 C -0.10 -1.15 5.68 -27.28 -0.16 -1.30 16 13 C -0.11 -1.50 5.85 -26.55 -0.16 -1.66 16 14 C -0.14 -2.36 5.47 -26.54 -0.15 -2.51 16 15 C 0.20 3.80 2.53 -68.28 -0.17 3.62 16 16 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 17 N -0.72 -17.78 5.05 -53.77 -0.27 -18.06 16 18 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 22 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.10 -1.72 1.80 -90.13 -0.16 -1.88 16 27 H 0.08 1.28 7.95 -51.93 -0.41 0.87 16 28 C 0.13 2.25 6.51 -3.43 -0.02 2.23 16 29 C -0.07 -0.79 5.93 -104.09 -0.62 -1.41 16 30 C -0.12 -1.34 8.74 36.01 0.31 -1.03 16 31 C -0.09 -0.78 9.51 -39.31 -0.37 -1.16 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 1.33 5.75 -51.93 -0.30 1.03 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.75 8.00 -51.93 -0.42 0.33 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.38 10.15 7.81 -40.82 -0.32 9.83 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 47 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 50 H 0.10 1.41 5.85 -51.93 -0.30 1.11 16 51 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -32.24 398.92 -10.67 -42.91 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.46 Total: 8.28 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.07 Total: -3.61 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.19 Total: -61.25 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.24 -10.67 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992753949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.610 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds