Wall clock time and date at job start Wed Apr 1 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38229 * 120.41966 * 2 1 4 4 N 1.31859 * 120.76098 * 179.97438 * 3 2 1 5 5 C 1.31879 * 121.72836 * 0.02562 * 4 3 2 6 6 C 1.38178 * 120.76885 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.42469 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47489 * 90.00144 * 7 6 5 9 9 O 1.21290 * 119.99838 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00701 * 180.02562 * 8 7 6 11 11 C 1.47623 * 125.72138 * 0.02932 * 10 8 7 12 12 C 1.55839 * 104.46734 * 204.84150 * 11 10 8 13 13 H 1.08999 * 113.43413 * 201.16057 * 12 11 10 14 14 C 1.52997 * 106.36641 * 77.05979 * 12 11 10 15 15 C 1.52620 * 110.92965 * 198.10619 * 14 12 11 16 16 C 1.53303 * 108.50503 * 62.21057 * 15 14 12 17 17 C 1.52845 * 108.24827 * 296.18215 * 16 15 14 18 18 H 1.09006 * 109.05734 * 298.54132 * 17 16 15 19 19 N 1.46499 * 109.05792 * 179.61565 * 17 16 15 20 20 C 1.36941 * 120.00097 * 85.00267 * 19 17 16 21 21 H 1.08009 * 119.99831 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00132 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99784 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00048 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47403 * 89.99694 * 24 22 20 26 26 H 1.48493 * 109.47353 * 210.00050 * 24 22 20 27 27 H 1.48508 * 109.47252 * 330.00228 * 24 22 20 28 28 C 1.50976 * 111.52021 * 59.03186 * 17 16 15 29 29 H 1.08995 * 108.31100 * 186.71288 * 28 17 16 30 30 C 1.47419 * 125.72791 * 179.97438 * 10 8 7 31 31 C 1.38632 * 120.41936 * 180.25077 * 2 1 3 32 32 H 1.09005 * 109.46769 * 90.00491 * 1 2 3 33 33 H 1.08997 * 109.47249 * 209.99749 * 1 2 3 34 34 H 1.08995 * 109.47418 * 330.00018 * 1 2 3 35 35 H 1.07992 * 119.61810 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.61811 * 180.02562 * 5 4 3 37 37 H 1.09010 * 109.46757 * 330.00486 * 7 6 5 38 38 H 1.09003 * 109.47760 * 210.00870 * 7 6 5 39 39 H 1.08996 * 110.43396 * 86.09994 * 11 10 8 40 40 H 1.08997 * 110.43318 * 323.59374 * 11 10 8 41 41 H 1.08994 * 109.18354 * 77.73531 * 14 12 11 42 42 H 1.09000 * 109.14300 * 318.45660 * 14 12 11 43 43 H 1.08991 * 109.63801 * 302.50406 * 15 14 12 44 44 H 1.08999 * 109.63267 * 181.90849 * 15 14 12 45 45 H 1.09002 * 109.71650 * 55.88348 * 16 15 14 46 46 H 1.09001 * 109.71373 * 176.48220 * 16 15 14 47 47 H 0.96994 * 120.00160 * 264.99359 * 19 17 16 48 48 H 0.96997 * 119.99493 * 179.97438 * 23 22 20 49 49 H 1.09005 * 110.05025 * 60.09218 * 30 10 8 50 50 H 1.08997 * 110.09802 * 298.64054 * 30 10 8 51 51 H 1.07995 * 120.78892 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0005 6 6 3.5949 -1.1471 -0.0005 7 6 4.4026 -2.4192 -0.0011 8 6 4.6714 -2.8443 1.4195 9 8 4.2482 -2.1798 2.3417 10 7 5.3820 -3.9628 1.6653 11 6 5.9551 -4.8618 0.6442 12 6 6.0782 -6.2390 1.3629 13 1 6.8000 -6.9088 0.8955 14 6 4.6690 -6.8336 1.3999 15 6 4.5721 -7.9418 2.4448 16 6 4.8509 -7.3351 3.8248 17 6 6.2899 -6.8201 3.8392 18 1 6.9690 -7.6566 3.6742 19 7 6.5728 -6.2275 5.1489 20 6 6.9807 -7.0226 6.1865 21 1 7.0935 -8.0867 6.0395 22 6 7.2492 -6.4611 7.4272 23 7 7.6407 -7.2254 8.4247 24 14 7.0548 -4.6208 7.6813 25 1 5.6685 -4.3259 8.1247 26 1 8.0142 -4.1599 8.7167 27 1 7.3269 -3.9132 6.4043 28 6 6.5174 -5.7818 2.7670 29 1 7.5799 -5.5399 2.7445 30 6 5.7184 -4.4932 2.9990 31 6 2.2089 -1.1955 -0.0052 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.6675 2.1276 -0.0004 36 1 5.3046 0.1285 0.0014 37 1 5.3490 -2.2485 -0.5144 38 1 3.8464 -3.2027 -0.5157 39 1 6.9370 -4.5062 0.3322 40 1 5.2868 -4.9384 -0.2135 41 1 4.4274 -7.2436 0.4194 42 1 3.9554 -6.0468 1.6448 43 1 5.3097 -8.7145 2.2287 44 1 3.5710 -8.3727 2.4298 45 1 4.1632 -6.5099 4.0095 46 1 4.7255 -8.0974 4.5937 47 1 6.4712 -5.2720 5.2810 48 1 7.8287 -6.8329 9.2915 49 1 4.8067 -4.7139 3.5543 50 1 6.3240 -3.7716 3.5473 51 1 1.6888 -2.1419 -0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992754239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:28 Heat of formation + Delta-G solvation = 4.111838 kcal Electronic energy + Delta-G solvation = -30445.814282 eV Core-core repulsion = 26537.601856 eV Total energy + Delta-G solvation = -3908.212426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93744 -40.36825 -38.62820 -35.62400 -33.95355 -33.89403 -33.79759 -31.71749 -30.89230 -29.55246 -28.36337 -27.56902 -26.74955 -24.69139 -23.45942 -23.14329 -21.91167 -21.58706 -20.71343 -19.35272 -18.72082 -17.70122 -17.21246 -17.00610 -16.92797 -16.11717 -15.62143 -15.14053 -14.67385 -14.66399 -14.42965 -14.08305 -14.03508 -13.67706 -13.52427 -13.35876 -13.28739 -13.11156 -12.97626 -12.79078 -12.64766 -12.50754 -12.46598 -12.17743 -11.88153 -11.70539 -11.47885 -11.27218 -11.20475 -10.99341 -10.84481 -10.36026 -10.12931 -10.03658 -10.00549 -9.81443 -9.73190 -9.66369 -9.57440 -9.03138 -8.90232 -8.65163 -7.28559 -5.78027 -3.13802 0.83970 1.05353 2.54633 2.87599 3.39042 3.43171 3.47907 3.57118 4.12758 4.34058 4.35749 4.39765 4.43927 4.59248 4.65177 4.70345 4.73753 4.76497 4.84470 4.99720 5.10501 5.16436 5.21417 5.23099 5.27235 5.31442 5.40273 5.47558 5.50824 5.54570 5.58695 5.60033 5.66444 5.67866 5.78140 5.85779 5.92717 5.98139 5.98891 6.05291 6.18612 6.20161 6.28649 6.34649 6.40984 6.47005 6.60195 6.81361 6.99362 7.45377 7.75505 7.97380 8.09271 8.40871 9.18968 9.91931 10.10645 11.40176 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.002853 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.457390 B = 9813.236767 C =10984.851772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.095 3.905 4 N -0.481 5.481 5 C 0.107 3.893 6 C -0.111 4.111 7 C -0.093 4.093 8 C 0.525 3.475 9 O -0.532 6.532 10 N -0.615 5.615 11 C 0.099 3.901 12 C -0.089 4.089 13 H 0.101 0.899 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.137 4.137 17 C 0.195 3.805 18 H 0.060 0.940 19 N -0.751 5.751 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.880 3.120 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.099 4.099 29 H 0.078 0.922 30 C 0.114 3.886 31 C -0.063 4.063 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.313 8.058 -25.363 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.062 4.062 4 N -0.188 5.188 5 C -0.050 4.050 6 C -0.113 4.113 7 C -0.133 4.133 8 C 0.313 3.687 9 O -0.408 6.408 10 N -0.350 5.350 11 C -0.024 4.024 12 C -0.109 4.109 13 H 0.119 0.881 14 C -0.149 4.149 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.086 3.914 18 H 0.078 0.922 19 N -0.393 5.393 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.710 3.290 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.119 4.119 29 H 0.097 0.903 30 C -0.008 4.008 31 C -0.089 4.089 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.085 0.915 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.044 9.130 -24.698 28.182 hybrid contribution -0.457 0.450 0.460 0.789 sum -10.501 9.579 -24.238 28.098 Atomic orbital electron populations 1.20717 0.90152 1.03330 1.02473 1.20902 0.97611 0.94062 1.01357 1.22654 0.89985 0.97436 0.96169 1.67669 1.08377 1.31034 1.11703 1.22552 1.00151 0.87095 0.95203 1.20292 0.94301 0.95429 1.01320 1.20571 1.01707 0.95882 0.95169 1.20091 0.77972 0.79614 0.91005 1.90767 1.50821 1.52922 1.46323 1.48657 1.53335 1.24363 1.08637 1.22692 0.98473 0.90009 0.91268 1.22391 0.98152 0.94877 0.95470 0.88068 1.21508 0.95789 0.98606 0.98957 1.21513 1.00931 0.97427 0.95674 1.22281 0.99280 1.00575 0.95533 1.19633 0.94238 0.93447 0.84091 0.92167 1.42873 1.82380 1.06364 1.07689 1.19054 1.37344 0.92594 0.88284 0.89111 1.24647 1.01345 0.97037 0.95902 1.69696 1.52303 1.34061 1.02032 0.86630 0.77829 0.87071 0.77459 1.21011 1.21683 1.20375 1.21751 1.00193 0.94926 0.95021 0.90310 1.21908 1.00095 0.94890 0.83858 1.21322 0.93233 0.98311 0.96001 0.90924 0.91245 0.91097 0.82940 0.83084 0.87641 0.87819 0.91194 0.90544 0.92444 0.92066 0.91965 0.92611 0.92720 0.91304 0.80658 0.93057 0.90685 0.91489 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 36.00 0.36 -0.34 16 2 C -0.14 -1.30 5.90 -104.48 -0.62 -1.91 16 3 C 0.09 0.98 10.86 -17.54 -0.19 0.79 16 4 N -0.48 -5.96 10.36 -13.26 -0.14 -6.10 16 5 C 0.11 1.23 10.86 -17.55 -0.19 1.04 16 6 C -0.11 -1.17 4.39 -104.48 -0.46 -1.63 16 7 C -0.09 -0.80 4.86 -29.04 -0.14 -0.94 16 8 C 0.53 6.94 7.85 -10.99 -0.09 6.85 16 9 O -0.53 -9.63 16.37 5.55 0.09 -9.54 16 10 N -0.62 -7.61 2.86 -170.03 -0.49 -8.10 16 11 C 0.10 0.85 5.96 -1.91 -0.01 0.84 16 12 C -0.09 -0.90 3.72 -88.55 -0.33 -1.23 16 13 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 14 C -0.11 -1.14 4.81 -26.93 -0.13 -1.27 16 15 C -0.12 -1.43 5.93 -26.77 -0.16 -1.59 16 16 C -0.14 -2.22 5.37 -26.65 -0.14 -2.37 16 17 C 0.20 3.44 2.44 -69.03 -0.17 3.28 16 18 H 0.06 1.10 8.06 -51.93 -0.42 0.69 16 19 N -0.75 -17.12 4.82 -54.49 -0.26 -17.38 16 20 C -0.24 -6.68 10.39 -15.06 -0.16 -6.84 16 21 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 24 Si 0.88 22.58 27.73 -169.99 -4.71 17.86 16 25 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 28 C -0.10 -1.40 2.39 -90.88 -0.22 -1.62 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 C 0.11 1.77 4.79 -3.34 -0.02 1.75 16 31 C -0.06 -0.63 9.55 -39.27 -0.37 -1.00 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.11 0.67 8.09 -51.92 -0.42 0.25 16 38 H 0.10 0.65 7.80 -51.93 -0.41 0.24 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.47 7.31 -51.93 -0.38 0.09 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.71 7.16 -51.93 -0.37 0.34 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.94 6.75 -51.93 -0.35 0.58 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.36 8.32 4.62 -40.82 -0.19 8.14 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.07 1.30 6.50 -51.93 -0.34 0.97 16 50 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 51 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -35.29 398.68 -10.22 -45.51 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.37 Total: 6.27 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.12 Total: -6.09 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.11 Total: -60.02 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.29 -10.22 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992754239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.623 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds