Wall clock time and date at job start Wed Apr 1 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38224 * 120.42200 * 2 1 4 4 N 1.31858 * 120.76661 * 179.97438 * 3 2 1 5 5 C 1.31889 * 121.71906 * 359.70009 * 4 3 2 6 6 C 1.38183 * 120.76921 * 0.58575 * 5 4 3 7 7 C 1.50697 * 120.41773 * 179.69956 * 6 5 4 8 8 C 1.50693 * 109.47467 * 269.72492 * 7 6 5 9 9 O 1.21289 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00352 * 179.97438 * 8 7 6 11 11 C 1.48662 * 125.78052 * 359.97438 * 10 8 7 12 12 C 1.53064 * 103.44527 * 155.61951 * 11 10 8 13 13 H 1.09004 * 111.35693 * 284.02048 * 12 11 10 14 14 C 1.51609 * 116.68108 * 155.88738 * 12 11 10 15 15 C 1.53815 * 107.02741 * 183.74228 * 14 12 11 16 16 C 1.52534 * 111.70188 * 57.53506 * 15 14 12 17 17 C 1.52936 * 111.73887 * 306.15144 * 16 15 14 18 18 H 1.09000 * 109.99380 * 176.59511 * 17 16 15 19 19 N 1.46507 * 109.42381 * 297.53052 * 17 16 15 20 20 C 1.36932 * 119.99861 * 207.37557 * 19 17 16 21 21 H 1.08001 * 120.00605 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99870 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.47123 * 89.99904 * 24 22 20 26 26 H 1.48496 * 109.47190 * 209.99602 * 24 22 20 27 27 H 1.48502 * 109.47219 * 330.00007 * 24 22 20 28 28 C 1.51440 * 107.50973 * 56.90022 * 17 16 15 29 29 H 1.09005 * 109.86646 * 54.52964 * 28 17 16 30 30 C 1.48244 * 125.78858 * 179.97438 * 10 8 7 31 31 C 1.38632 * 120.41933 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47399 * 270.02656 * 1 2 3 33 33 H 1.09004 * 109.46925 * 30.02056 * 1 2 3 34 34 H 1.09000 * 109.47617 * 150.02262 * 1 2 3 35 35 H 1.08000 * 119.62074 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.61509 * 180.31107 * 5 4 3 37 37 H 1.09001 * 109.46756 * 149.72157 * 7 6 5 38 38 H 1.08998 * 109.46929 * 29.73212 * 7 6 5 39 39 H 1.08998 * 110.62817 * 37.12936 * 11 10 8 40 40 H 1.08999 * 110.76152 * 274.16633 * 11 10 8 41 41 H 1.09003 * 109.94376 * 303.11737 * 14 12 11 42 42 H 1.08995 * 109.94448 * 64.27703 * 14 12 11 43 43 H 1.08991 * 109.04074 * 178.11073 * 15 14 12 44 44 H 1.09003 * 109.03013 * 296.97020 * 15 14 12 45 45 H 1.08997 * 109.04052 * 66.52043 * 16 15 14 46 46 H 1.08995 * 109.03881 * 185.39894 * 16 15 14 47 47 H 0.96996 * 119.99908 * 27.38177 * 19 17 16 48 48 H 0.96996 * 120.00529 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.16574 * 57.71848 * 30 10 8 50 50 H 1.08997 * 110.17051 * 295.92328 * 30 10 8 51 51 H 1.08004 * 120.78855 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0069 6 6 3.5947 -1.1472 0.0012 7 6 4.4026 -2.4194 0.0018 8 6 4.6724 -2.8438 -1.4188 9 8 4.2506 -2.1784 -2.3410 10 7 5.3833 -3.9621 -1.6645 11 6 5.9601 -4.8687 -0.6372 12 6 6.0820 -6.2064 -1.3711 13 1 5.1125 -6.6946 -1.4702 14 6 7.1160 -7.1811 -0.8426 15 6 7.1168 -8.3938 -1.7888 16 6 7.4129 -7.9858 -3.2284 17 6 6.4653 -6.8872 -3.7121 18 1 6.7395 -6.5756 -4.7200 19 7 5.0894 -7.3905 -3.7004 20 6 4.1628 -6.8706 -4.5642 21 1 4.4463 -6.0898 -5.2544 22 6 2.8591 -7.3471 -4.5527 23 7 2.5137 -8.2990 -3.7119 24 14 1.5949 -6.6373 -5.7305 25 1 1.6047 -7.4158 -6.9952 26 1 0.2463 -6.7127 -5.1135 27 1 1.9286 -5.2194 -6.0194 28 6 6.5962 -5.7194 -2.7568 29 1 7.6412 -5.4189 -2.6802 30 6 5.7225 -4.4967 -3.0050 31 6 2.2089 -1.1955 0.0005 32 1 -0.3634 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6676 2.1276 -0.0004 36 1 5.3046 0.1283 0.0122 37 1 3.8458 -3.2030 0.5156 38 1 5.3484 -2.2489 0.5160 39 1 5.2882 -4.9588 0.2162 40 1 6.9404 -4.5158 -0.3171 41 1 8.1002 -6.7127 -0.8378 42 1 6.8492 -7.4954 0.1663 43 1 7.8751 -9.1030 -1.4572 44 1 6.1399 -8.8758 -1.7497 45 1 8.4376 -7.6196 -3.2906 46 1 7.3085 -8.8579 -3.8738 47 1 4.8349 -8.0919 -3.0807 48 1 1.6028 -8.6322 -3.7041 49 1 6.2733 -3.7511 -3.5785 50 1 4.8149 -4.7846 -3.5355 51 1 1.6887 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992754249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:40 Heat of formation + Delta-G solvation = 4.096282 kcal Electronic energy + Delta-G solvation = -30786.916219 eV Core-core repulsion = 26878.703119 eV Total energy + Delta-G solvation = -3908.213100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.58238 -40.04915 -38.44516 -35.44451 -33.70468 -33.65539 -33.55956 -31.41702 -30.56782 -29.07616 -27.97697 -27.37423 -26.82469 -24.53222 -23.40730 -23.05327 -21.58700 -20.92642 -20.68880 -18.94632 -18.73698 -17.20514 -17.02762 -16.75708 -16.72239 -15.79534 -15.17463 -14.81927 -14.60206 -14.33611 -14.26721 -14.13460 -13.84510 -13.62047 -13.30776 -13.07526 -12.99843 -12.80880 -12.72678 -12.63250 -12.50938 -12.29853 -12.05507 -11.87757 -11.53635 -11.47473 -11.37113 -11.19276 -10.87284 -10.76969 -10.40300 -10.34820 -10.13805 -9.92718 -9.81401 -9.51946 -9.50266 -9.46244 -9.39118 -8.91133 -8.82746 -8.24515 -7.00155 -5.80594 -3.08078 1.03718 1.25591 2.90866 3.22015 3.43203 3.49574 3.52529 3.77602 4.33651 4.57601 4.58690 4.63404 4.65662 4.81736 4.91549 4.94283 5.01591 5.07157 5.16068 5.22872 5.36042 5.39675 5.41902 5.48225 5.54177 5.58538 5.61613 5.65583 5.71598 5.76539 5.79897 5.87539 5.93801 5.96554 6.02469 6.07934 6.14789 6.20982 6.22803 6.31364 6.37143 6.52083 6.59302 6.64740 6.67019 6.74652 6.85547 6.87020 7.07421 7.68470 7.84994 7.92602 8.38193 8.45937 9.50743 10.06485 10.41483 11.41592 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003537 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.400673 B = 7913.318507 C = 9858.008832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.092 3.908 4 N -0.482 5.482 5 C 0.104 3.896 6 C -0.106 4.106 7 C -0.095 4.095 8 C 0.526 3.474 9 O -0.539 6.539 10 N -0.613 5.613 11 C 0.110 3.890 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.098 4.098 15 C -0.115 4.115 16 C -0.121 4.121 17 C 0.188 3.812 18 H 0.053 0.947 19 N -0.716 5.716 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.931 5.931 24 Si 0.898 3.102 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C -0.117 4.117 29 H 0.061 0.939 30 C 0.117 3.883 31 C -0.062 4.062 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.053 0.947 50 H 0.099 0.901 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 9.018 12.540 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.065 4.065 4 N -0.190 5.190 5 C -0.053 4.053 6 C -0.108 4.108 7 C -0.135 4.135 8 C 0.314 3.686 9 O -0.416 6.416 10 N -0.347 5.347 11 C -0.013 4.013 12 C -0.125 4.125 13 H 0.125 0.875 14 C -0.136 4.136 15 C -0.152 4.152 16 C -0.159 4.159 17 C 0.077 3.923 18 H 0.071 0.929 19 N -0.357 5.357 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.580 5.580 24 Si 0.729 3.271 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.206 1.206 28 C -0.139 4.139 29 H 0.079 0.921 30 C -0.004 4.004 31 C -0.088 4.088 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.117 0.883 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.265 10.339 11.904 16.966 hybrid contribution -1.251 -0.769 -0.444 1.534 sum 5.014 9.571 11.460 15.750 Atomic orbital electron populations 1.20720 0.90222 1.03341 1.02420 1.20892 0.97582 0.94049 1.01318 1.22603 0.89993 0.97332 0.96621 1.67649 1.08369 1.31042 1.11916 1.22515 1.00022 0.87116 0.95622 1.20310 0.94306 0.95473 1.00725 1.20583 1.01433 0.95819 0.95677 1.19969 0.78058 0.79903 0.90719 1.90732 1.51086 1.53447 1.46308 1.49141 1.52881 1.23891 1.08826 1.22073 0.97697 0.90306 0.91215 1.22102 1.01656 0.93753 0.94959 0.87521 1.21279 0.97961 0.96040 0.98348 1.21454 1.02019 0.96969 0.94782 1.21644 0.98558 0.99587 0.96110 1.19735 0.86586 0.90387 0.95641 0.92903 1.42454 1.04216 1.44950 1.44123 1.19197 0.89911 1.15413 1.12263 0.91190 1.24657 0.97377 0.98961 0.99436 1.69637 1.18441 1.30610 1.39276 0.86313 0.81415 0.78733 0.80594 1.21725 1.21872 1.20619 1.22595 0.97228 0.95998 0.98117 0.92090 1.21790 1.01329 0.93844 0.83408 1.21382 0.93359 0.98439 0.95633 0.90977 0.91193 0.91134 0.83060 0.83177 0.87851 0.87926 0.91171 0.91782 0.92369 0.92271 0.92874 0.91408 0.92865 0.91775 0.78008 0.93593 0.92890 0.88251 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.04 36.00 0.36 -0.61 16 2 C -0.14 -1.62 5.90 -104.48 -0.62 -2.23 16 3 C 0.09 1.12 10.86 -17.55 -0.19 0.93 16 4 N -0.48 -6.77 10.36 -13.25 -0.14 -6.91 16 5 C 0.10 1.39 10.86 -17.55 -0.19 1.20 16 6 C -0.11 -1.40 4.39 -104.49 -0.46 -1.86 16 7 C -0.09 -1.13 4.89 -29.04 -0.14 -1.28 16 8 C 0.53 8.84 7.86 -10.99 -0.09 8.76 16 9 O -0.54 -11.48 16.38 5.55 0.09 -11.39 16 10 N -0.61 -9.98 3.38 -170.87 -0.58 -10.56 16 11 C 0.11 1.40 6.34 -2.81 -0.02 1.38 16 12 C -0.11 -1.55 2.40 -89.90 -0.22 -1.76 16 13 H 0.11 2.00 6.76 -51.93 -0.35 1.65 16 14 C -0.10 -1.19 5.71 -27.01 -0.15 -1.34 16 15 C -0.11 -1.55 5.58 -26.55 -0.15 -1.70 16 16 C -0.12 -1.78 5.45 -27.00 -0.15 -1.93 16 17 C 0.19 3.35 2.99 -68.75 -0.21 3.14 16 18 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 19 N -0.72 -16.12 3.90 -54.22 -0.21 -16.33 16 20 C -0.24 -6.17 8.14 -15.06 -0.12 -6.30 16 21 H 0.07 1.83 7.59 -52.49 -0.40 1.43 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 24 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.12 -1.87 2.12 -90.36 -0.19 -2.06 16 29 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 30 C 0.12 2.15 6.58 -3.43 -0.02 2.13 16 31 C -0.06 -0.81 9.55 -39.28 -0.37 -1.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 1.08 7.84 -51.93 -0.41 0.67 16 38 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.63 7.99 -51.93 -0.41 0.21 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.07 7.00 -51.93 -0.36 0.71 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.38 9.24 6.04 -40.82 -0.25 8.99 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.10 2.25 5.85 -51.93 -0.30 1.95 16 51 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -32.64 399.48 -10.47 -43.10 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.33 Total: 9.85 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.02 Total: -5.03 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.20 Total: -60.01 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.64 -10.47 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992754249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.201 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds