Wall clock time and date at job start Wed Apr 1 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38224 * 120.42200 * 2 1 4 4 N 1.31858 * 120.76661 * 179.97438 * 3 2 1 5 5 C 1.31889 * 121.71906 * 359.70009 * 4 3 2 6 6 C 1.38183 * 120.76921 * 0.58575 * 5 4 3 7 7 C 1.50697 * 120.41773 * 179.69956 * 6 5 4 8 8 C 1.50693 * 109.47467 * 269.72492 * 7 6 5 9 9 O 1.21289 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00352 * 179.97438 * 8 7 6 11 11 C 1.48662 * 125.78052 * 359.97438 * 10 8 7 12 12 C 1.53064 * 103.44527 * 155.61951 * 11 10 8 13 13 H 1.09004 * 111.35693 * 284.02048 * 12 11 10 14 14 C 1.51609 * 116.68108 * 155.88738 * 12 11 10 15 15 C 1.53815 * 107.02741 * 183.74228 * 14 12 11 16 16 C 1.52534 * 111.70188 * 57.53506 * 15 14 12 17 17 C 1.52936 * 111.73887 * 306.15144 * 16 15 14 18 18 H 1.09000 * 109.99380 * 176.59511 * 17 16 15 19 19 N 1.46507 * 109.42381 * 297.53052 * 17 16 15 20 20 C 1.36932 * 119.99861 * 207.37557 * 19 17 16 21 21 H 1.08001 * 120.00605 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99870 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.47123 * 89.99904 * 24 22 20 26 26 H 1.48496 * 109.47190 * 209.99602 * 24 22 20 27 27 H 1.48502 * 109.47219 * 330.00007 * 24 22 20 28 28 C 1.51440 * 107.50973 * 56.90022 * 17 16 15 29 29 H 1.09005 * 109.86646 * 54.52964 * 28 17 16 30 30 C 1.48244 * 125.78858 * 179.97438 * 10 8 7 31 31 C 1.38632 * 120.41933 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47399 * 270.02656 * 1 2 3 33 33 H 1.09004 * 109.46925 * 30.02056 * 1 2 3 34 34 H 1.09000 * 109.47617 * 150.02262 * 1 2 3 35 35 H 1.08000 * 119.62074 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.61509 * 180.31107 * 5 4 3 37 37 H 1.09001 * 109.46756 * 149.72157 * 7 6 5 38 38 H 1.08998 * 109.46929 * 29.73212 * 7 6 5 39 39 H 1.08998 * 110.62817 * 37.12936 * 11 10 8 40 40 H 1.08999 * 110.76152 * 274.16633 * 11 10 8 41 41 H 1.09003 * 109.94376 * 303.11737 * 14 12 11 42 42 H 1.08995 * 109.94448 * 64.27703 * 14 12 11 43 43 H 1.08991 * 109.04074 * 178.11073 * 15 14 12 44 44 H 1.09003 * 109.03013 * 296.97020 * 15 14 12 45 45 H 1.08997 * 109.04052 * 66.52043 * 16 15 14 46 46 H 1.08995 * 109.03881 * 185.39894 * 16 15 14 47 47 H 0.96996 * 119.99908 * 27.38177 * 19 17 16 48 48 H 0.96996 * 120.00529 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.16574 * 57.71848 * 30 10 8 50 50 H 1.08997 * 110.17051 * 295.92328 * 30 10 8 51 51 H 1.08004 * 120.78855 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0069 6 6 3.5947 -1.1472 0.0012 7 6 4.4026 -2.4194 0.0018 8 6 4.6724 -2.8438 -1.4188 9 8 4.2506 -2.1784 -2.3410 10 7 5.3833 -3.9621 -1.6645 11 6 5.9601 -4.8687 -0.6372 12 6 6.0820 -6.2064 -1.3711 13 1 5.1125 -6.6946 -1.4702 14 6 7.1160 -7.1811 -0.8426 15 6 7.1168 -8.3938 -1.7888 16 6 7.4129 -7.9858 -3.2284 17 6 6.4653 -6.8872 -3.7121 18 1 6.7395 -6.5756 -4.7200 19 7 5.0894 -7.3905 -3.7004 20 6 4.1628 -6.8706 -4.5642 21 1 4.4463 -6.0898 -5.2544 22 6 2.8591 -7.3471 -4.5527 23 7 2.5137 -8.2990 -3.7119 24 14 1.5949 -6.6373 -5.7305 25 1 1.6047 -7.4158 -6.9952 26 1 0.2463 -6.7127 -5.1135 27 1 1.9286 -5.2194 -6.0194 28 6 6.5962 -5.7194 -2.7568 29 1 7.6412 -5.4189 -2.6802 30 6 5.7225 -4.4967 -3.0050 31 6 2.2089 -1.1955 0.0005 32 1 -0.3634 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6676 2.1276 -0.0004 36 1 5.3046 0.1283 0.0122 37 1 3.8458 -3.2030 0.5156 38 1 5.3484 -2.2489 0.5160 39 1 5.2882 -4.9588 0.2162 40 1 6.9404 -4.5158 -0.3171 41 1 8.1002 -6.7127 -0.8378 42 1 6.8492 -7.4954 0.1663 43 1 7.8751 -9.1030 -1.4572 44 1 6.1399 -8.8758 -1.7497 45 1 8.4376 -7.6196 -3.2906 46 1 7.3085 -8.8579 -3.8738 47 1 4.8349 -8.0919 -3.0807 48 1 1.6028 -8.6322 -3.7041 49 1 6.2733 -3.7511 -3.5785 50 1 4.8149 -4.7846 -3.5355 51 1 1.6887 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992754249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:38 Heat of formation + Delta-G solvation = -15.593818 kcal Electronic energy + Delta-G solvation = -30787.770046 eV Core-core repulsion = 26878.703119 eV Total energy + Delta-G solvation = -3909.066927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71196 -41.16063 -39.75051 -36.84465 -35.35088 -34.63198 -34.52301 -33.07569 -31.79776 -30.64090 -29.11058 -28.22375 -28.04887 -25.97614 -25.03285 -24.13429 -22.58718 -22.13929 -21.86387 -20.18194 -20.09500 -19.16088 -17.99062 -17.94111 -17.72105 -17.02644 -16.62732 -16.38936 -15.91454 -15.63477 -15.45251 -15.29533 -15.19518 -14.95293 -14.41377 -14.20435 -14.15961 -14.02836 -13.69545 -13.63802 -13.52002 -13.34031 -13.26759 -13.11453 -13.02724 -12.88246 -12.67157 -12.59390 -12.44447 -12.35167 -12.17221 -11.80597 -11.58417 -11.32903 -11.09582 -11.05554 -10.89134 -10.56579 -10.53290 -10.45712 -9.76236 -9.59082 -8.94459 -7.94374 -5.16821 0.09336 0.28529 1.38363 1.40812 1.47222 1.63726 2.02346 2.53061 2.80338 3.39236 3.42792 3.47769 3.66061 3.74229 3.79237 3.85946 3.96959 4.01021 4.03519 4.16471 4.22053 4.30346 4.39440 4.40788 4.43893 4.52538 4.58250 4.68278 4.69617 4.73613 4.75305 4.77875 4.80312 4.86898 4.92760 4.98340 5.13215 5.13593 5.14295 5.21826 5.25798 5.27008 5.31501 5.43622 5.48987 5.50611 5.59508 5.60435 5.75548 5.80432 6.29860 6.60944 6.97206 7.17391 7.37924 8.16340 8.39175 9.28698 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003537 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.400673 B = 7913.318507 C = 9858.008832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.082 3.918 4 N -0.505 5.505 5 C 0.090 3.910 6 C -0.117 4.117 7 C -0.081 4.081 8 C 0.517 3.483 9 O -0.596 6.596 10 N -0.616 5.616 11 C 0.111 3.889 12 C -0.099 4.099 13 H 0.058 0.942 14 C -0.088 4.088 15 C -0.113 4.113 16 C -0.113 4.113 17 C 0.177 3.823 18 H 0.039 0.961 19 N -0.720 5.720 20 C -0.216 4.216 21 H 0.063 0.937 22 C -0.066 4.066 23 N -0.961 5.961 24 Si 0.945 3.055 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.287 1.287 28 C -0.110 4.110 29 H 0.096 0.904 30 C 0.117 3.883 31 C -0.084 4.084 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.377 0.623 48 H 0.248 0.752 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 9.615 14.987 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.075 4.075 4 N -0.213 5.213 5 C -0.067 4.067 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.307 3.693 9 O -0.477 6.477 10 N -0.349 5.349 11 C -0.010 4.010 12 C -0.118 4.118 13 H 0.077 0.923 14 C -0.126 4.126 15 C -0.151 4.151 16 C -0.152 4.152 17 C 0.068 3.932 18 H 0.057 0.943 19 N -0.361 5.361 20 C -0.349 4.349 21 H 0.081 0.919 22 C -0.259 4.259 23 N -0.613 5.613 24 Si 0.777 3.223 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.213 1.213 28 C -0.131 4.131 29 H 0.114 0.886 30 C -0.005 4.005 31 C -0.110 4.110 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.211 0.789 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.599 10.930 14.369 19.997 hybrid contribution -1.906 -0.899 -1.266 2.459 sum 6.692 10.031 13.102 17.807 Atomic orbital electron populations 1.20776 0.88202 1.03739 1.03742 1.21232 0.99146 0.93591 1.00220 1.23077 0.89754 0.98591 0.96087 1.67664 1.09344 1.31601 1.12682 1.22830 1.00933 0.87129 0.95786 1.20482 0.94580 0.96004 1.00875 1.20603 1.03421 0.95658 0.92422 1.20886 0.76862 0.79304 0.92219 1.90700 1.53243 1.55310 1.48473 1.49280 1.52692 1.24155 1.08766 1.22357 1.00050 0.88158 0.90447 1.21994 1.00162 0.95070 0.94583 0.92324 1.21262 0.98355 0.94395 0.98549 1.21450 1.01067 0.98265 0.94312 1.21565 0.99155 0.97710 0.96724 1.20028 0.84802 0.92482 0.95890 0.94339 1.42550 1.05735 1.44650 1.43206 1.19385 0.90508 1.13691 1.11306 0.91942 1.25166 0.98977 1.00295 1.01418 1.69743 1.18154 1.32317 1.41102 0.85549 0.79636 0.77705 0.79413 1.21239 1.22405 1.21315 1.22427 0.98496 0.93938 0.98270 0.88598 1.21559 0.99233 0.95067 0.84659 1.21657 0.93861 0.99168 0.96270 0.89089 0.89774 0.91730 0.80557 0.81631 0.85978 0.84121 0.88998 0.87769 0.89274 0.90340 0.90119 0.94701 0.89480 0.93291 0.78913 0.94337 0.93376 0.93685 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.04 71.23 0.72 -1.04 16 2 C -0.14 -3.22 5.90 -19.77 -0.12 -3.33 16 3 C 0.08 1.92 10.86 84.69 0.92 2.84 16 4 N -0.51 -13.85 10.36 -195.84 -2.03 -15.88 16 5 C 0.09 2.32 10.86 84.67 0.92 3.24 16 6 C -0.12 -2.99 4.39 -19.78 -0.09 -3.08 16 7 C -0.08 -1.77 4.89 29.10 0.14 -1.63 16 8 C 0.52 17.11 7.86 87.66 0.69 17.80 16 9 O -0.60 -26.18 16.38 -3.06 -0.05 -26.23 16 10 N -0.62 -19.34 3.38 -812.88 -2.75 -22.09 16 11 C 0.11 2.42 6.34 85.98 0.55 2.97 16 12 C -0.10 -2.66 2.40 -10.33 -0.02 -2.69 16 13 H 0.06 2.20 6.76 -2.38 -0.02 2.18 16 14 C -0.09 -1.74 5.71 30.41 0.17 -1.57 16 15 C -0.11 -2.76 5.58 30.71 0.17 -2.58 16 16 C -0.11 -3.11 5.45 30.42 0.17 -2.94 16 17 C 0.18 6.27 2.99 44.46 0.13 6.40 16 18 H 0.04 1.46 8.07 -2.39 -0.02 1.44 16 19 N -0.72 -33.54 3.90 -325.47 -1.27 -34.81 16 20 C -0.22 -11.77 8.14 84.03 0.68 -11.08 16 21 H 0.06 3.43 7.59 -2.91 -0.02 3.41 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.96 -57.80 13.06 21.65 0.28 -57.51 16 24 Si 0.95 48.11 29.55 68.60 2.03 50.14 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 27 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 28 C -0.11 -3.32 2.12 -10.63 -0.02 -3.34 16 29 H 0.10 2.31 7.93 -2.38 -0.02 2.29 16 30 C 0.12 4.35 6.58 85.82 0.56 4.92 16 31 C -0.08 -2.15 9.55 22.47 0.21 -1.93 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.13 8.09 -2.38 -0.02 1.11 16 34 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.12 2.21 7.84 -2.39 -0.02 2.19 16 38 H 0.14 1.97 8.09 -2.39 -0.02 1.95 16 39 H 0.09 1.66 7.55 -2.39 -0.02 1.64 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.31 7.99 -2.39 -0.02 1.29 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.03 1.08 7.00 -2.39 -0.02 1.06 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.38 18.82 6.04 -92.71 -0.56 18.26 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.04 2.16 5.85 -2.39 -0.01 2.14 16 51 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -77.29 399.48 2.83 -74.46 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.36 Total: 32.30 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 6.25 Total: -0.37 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -5.76 Total: -130.29 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -77.29 2.83 -74.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992754249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.863 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds