Wall clock time and date at job start Wed Apr 1 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38625 * 120.32285 * 2 1 4 4 C 1.38593 * 118.48514 * 180.27002 * 3 2 1 5 5 C 1.39306 * 119.06033 * 0.02562 * 4 3 2 6 6 C 1.48172 * 119.72029 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99917 * 359.97354 * 6 5 4 8 8 N 1.34777 * 119.99931 * 179.97438 * 6 5 4 9 9 C 1.47324 * 125.74076 * 359.69239 * 8 6 5 10 10 C 1.55133 * 106.87599 * 179.90883 * 9 8 6 11 11 H 1.08997 * 112.80351 * 215.56499 * 10 9 8 12 12 C 1.51220 * 106.33159 * 92.78742 * 10 9 8 13 13 C 1.52247 * 109.96240 * 191.70891 * 12 10 9 14 14 C 1.51849 * 110.43075 * 61.62969 * 13 12 10 15 15 C 1.50777 * 112.96003 * 306.82681 * 14 13 12 16 16 H 1.09003 * 108.11722 * 164.31504 * 15 14 13 17 17 N 1.46496 * 107.95690 * 280.90363 * 15 14 13 18 18 C 1.36939 * 120.00102 * 281.56424 * 17 15 14 19 19 H 1.07998 * 119.99665 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00318 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47143 * 90.00295 * 22 20 18 24 24 H 1.48496 * 109.47243 * 210.00512 * 22 20 18 25 25 H 1.48500 * 109.46955 * 330.00301 * 22 20 18 26 26 C 1.49693 * 116.27926 * 42.54782 * 15 14 13 27 27 H 1.09000 * 109.18275 * 198.01541 * 26 15 14 28 28 C 1.47811 * 125.74105 * 179.97438 * 8 6 5 29 29 N 1.32711 * 120.55500 * 359.97438 * 5 4 3 30 30 C 1.31519 * 121.64495 * 0.02562 * 29 5 4 31 31 C 1.50703 * 119.55319 * 180.02562 * 30 29 5 32 32 H 1.08998 * 109.47090 * 269.71997 * 1 2 3 33 33 H 1.08999 * 109.47342 * 29.72376 * 1 2 3 34 34 H 1.08998 * 109.47105 * 149.72674 * 1 2 3 35 35 H 1.07998 * 120.75621 * 0.25524 * 3 2 1 36 36 H 1.08001 * 120.46351 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.97629 * 299.39078 * 9 8 6 38 38 H 1.09004 * 109.97919 * 60.67622 * 9 8 6 39 39 H 1.08996 * 109.57619 * 71.49955 * 12 10 9 40 40 H 1.09005 * 109.25654 * 311.71666 * 12 10 9 41 41 H 1.09001 * 109.31358 * 301.33732 * 13 12 10 42 42 H 1.08994 * 109.31010 * 181.92523 * 13 12 10 43 43 H 1.09002 * 108.78417 * 185.93013 * 14 13 12 44 44 H 1.08998 * 108.78322 * 67.72820 * 14 13 12 45 45 H 0.96996 * 120.00083 * 101.56518 * 17 15 14 46 46 H 0.97001 * 119.99265 * 180.02562 * 21 20 18 47 47 H 1.09005 * 110.51463 * 322.97418 * 28 8 6 48 48 H 1.09002 * 110.51636 * 85.69543 * 28 8 6 49 49 H 1.09004 * 109.46903 * 269.98042 * 31 30 29 50 50 H 1.08999 * 109.46699 * 29.97223 * 31 30 29 51 51 H 1.08994 * 109.47580 * 149.97567 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 -0.0057 5 6 4.2293 -0.0866 -0.0118 6 6 5.7096 -0.1512 -0.0174 7 8 6.3625 0.8737 -0.0172 8 7 6.3320 -1.3466 -0.0228 9 6 5.6687 -2.6621 -0.0174 10 6 6.7915 -3.7326 -0.0293 11 1 6.5275 -4.6152 -0.6119 12 6 7.0648 -4.0783 1.4173 13 6 8.3416 -4.9008 1.5228 14 6 9.5294 -4.1035 1.0137 15 6 9.3156 -3.5499 -0.3724 16 1 10.0655 -2.7786 -0.5487 17 7 9.5462 -4.6327 -1.3318 18 6 10.8251 -4.9974 -1.6583 19 1 11.6637 -4.4870 -1.2083 20 6 11.0436 -6.0238 -2.5670 21 7 10.0215 -6.6461 -3.1151 22 14 12.7881 -6.5217 -3.0119 23 1 13.2529 -7.5815 -2.0813 24 1 12.8157 -7.0383 -4.4038 25 1 13.6825 -5.3412 -2.9042 26 6 7.9678 -2.9609 -0.6502 27 1 7.8215 -2.8938 -1.7282 28 6 7.7948 -1.5584 -0.0293 29 7 3.5217 -1.2093 -0.0116 30 6 2.2066 -1.1961 -0.0062 31 6 1.4501 -2.4995 -0.0057 32 1 -0.3633 -0.0050 1.0276 33 1 -0.3634 0.8924 -0.5095 34 1 -0.3633 -0.8875 -0.5181 35 1 1.6846 2.1419 0.0041 36 1 4.1692 2.0650 -0.0063 37 1 5.0597 -2.7684 0.8803 38 1 5.0456 -2.7687 -0.9053 39 1 6.2307 -4.6533 1.8192 40 1 7.1794 -3.1587 1.9912 41 1 8.2357 -5.8087 0.9289 42 1 8.5100 -5.1729 2.5647 43 1 10.4070 -4.7500 1.0019 44 1 9.7154 -3.2755 1.6976 45 1 8.7930 -5.0913 -1.7357 46 1 10.1742 -7.3636 -3.7498 47 1 8.2872 -0.8051 -0.6443 48 1 8.1880 -1.5398 0.9872 49 1 1.2632 -2.8115 -1.0332 50 1 2.0398 -3.2615 0.5039 51 1 0.5003 -2.3682 0.5126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992768477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:43 Heat of formation + Delta-G solvation = 9.225658 kcal Electronic energy + Delta-G solvation = -30658.721210 eV Core-core repulsion = 26750.730536 eV Total energy + Delta-G solvation = -3907.990674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08379 -40.12625 -38.44284 -35.63402 -34.25374 -33.57001 -33.28610 -31.55621 -30.69360 -29.26878 -28.67049 -27.68417 -26.46384 -24.81249 -23.47055 -22.80555 -22.10701 -21.83999 -20.93169 -19.77236 -18.11302 -17.41288 -17.08196 -16.67595 -16.02220 -15.76507 -15.41806 -15.21265 -14.71440 -14.48110 -14.27268 -13.97735 -13.75815 -13.52441 -13.49421 -13.37620 -13.26772 -13.05121 -12.89774 -12.67877 -12.59992 -12.44874 -12.32127 -11.87279 -11.71764 -11.60724 -11.27801 -11.08588 -10.86177 -10.80903 -10.62779 -10.31573 -10.13017 -10.07095 -10.01375 -9.78702 -9.59574 -9.52792 -9.37885 -9.10602 -8.81901 -8.46551 -6.89985 -5.72952 -3.00505 0.41077 0.93163 2.63225 2.94002 3.45559 3.51310 3.52411 3.62878 3.81741 4.29827 4.39398 4.49384 4.56156 4.61061 4.76670 4.88398 4.98188 5.09591 5.11277 5.14681 5.27179 5.29161 5.30780 5.39553 5.49984 5.52232 5.60527 5.67328 5.69964 5.73109 5.74298 5.76315 5.88504 5.90035 5.95636 5.98886 6.10786 6.19586 6.20576 6.28939 6.32422 6.41301 6.48994 6.52114 6.58428 6.86469 6.88187 7.05466 7.20993 7.48742 7.59741 7.73957 8.14197 8.46001 9.57419 10.15280 10.50832 11.49840 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002499 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.283405 B =11202.190846 C =11506.243073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.115 4.115 5 C 0.085 3.915 6 C 0.580 3.420 7 O -0.542 6.542 8 N -0.594 5.594 9 C 0.121 3.879 10 C -0.094 4.094 11 H 0.098 0.902 12 C -0.108 4.108 13 C -0.109 4.109 14 C -0.126 4.126 15 C 0.189 3.811 16 H 0.042 0.958 17 N -0.725 5.725 18 C -0.233 4.233 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.089 4.089 27 H 0.084 0.916 28 C 0.113 3.887 29 N -0.447 5.447 30 C 0.123 3.877 31 C -0.106 4.106 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.598 11.885 9.447 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.136 4.136 5 C -0.054 4.054 6 C 0.367 3.633 7 O -0.420 6.420 8 N -0.325 5.325 9 C -0.001 4.001 10 C -0.113 4.113 11 H 0.116 0.884 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.166 4.166 15 C 0.079 3.921 16 H 0.060 0.940 17 N -0.368 5.368 18 C -0.364 4.364 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.735 3.265 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.109 4.109 27 H 0.102 0.898 28 C -0.010 4.010 29 N -0.159 5.159 30 C -0.017 4.017 31 C -0.163 4.163 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.604 11.699 9.403 25.491 hybrid contribution 0.331 0.322 -0.440 0.638 sum -20.273 12.021 8.964 25.216 Atomic orbital electron populations 1.20826 0.89946 1.03502 1.02838 1.20964 0.97726 0.93623 0.99823 1.21484 0.93566 0.98383 0.97406 1.22081 0.94867 0.98976 0.97649 1.21069 0.94058 0.89576 1.00670 1.17497 0.85646 0.82611 0.77518 1.90778 1.65935 1.33463 1.51780 1.48449 1.08158 1.05777 1.70135 1.22503 0.94526 0.80584 1.02520 1.21906 0.94427 0.97609 0.97346 0.88402 1.21147 0.98105 0.99836 0.95425 1.20997 0.94480 0.99422 0.99797 1.21462 0.98705 0.98977 0.97486 1.18915 0.92365 0.91145 0.89665 0.94045 1.42545 1.05670 1.39075 1.49466 1.19218 0.84760 1.13154 1.19306 0.91280 1.24699 0.96957 0.99257 1.00107 1.69660 1.28571 1.26534 1.33452 0.86237 0.84527 0.78296 0.77436 1.21862 1.21906 1.20850 1.21553 0.95815 0.92672 1.00846 0.89781 1.22384 0.79509 0.97713 1.01354 1.67688 1.07699 1.30047 1.10441 1.21251 0.89330 0.95278 0.95848 1.20778 0.99196 0.92944 1.03427 0.90550 0.91104 0.90607 0.84185 0.83507 0.90742 0.90989 0.92414 0.92591 0.91468 0.93361 0.91114 0.94489 0.78377 0.93652 0.90297 0.91003 0.90091 0.90037 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.20 36.01 0.33 -0.19 16 2 C -0.12 -0.95 5.91 -104.36 -0.62 -1.56 16 3 C -0.08 -0.69 9.85 -39.31 -0.39 -1.07 16 4 C -0.11 -1.27 9.63 -39.05 -0.38 -1.64 16 5 C 0.08 1.13 6.72 -83.01 -0.56 0.57 16 6 C 0.58 9.18 7.85 -12.18 -0.10 9.08 16 7 O -0.54 -9.86 16.60 5.35 0.09 -9.77 16 8 N -0.59 -8.97 3.34 -170.79 -0.57 -9.54 16 9 C 0.12 1.63 4.75 -2.46 -0.01 1.62 16 10 C -0.09 -1.36 3.43 -89.99 -0.31 -1.67 16 11 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 12 C -0.11 -1.47 4.62 -28.01 -0.13 -1.60 16 13 C -0.11 -1.72 5.89 -27.70 -0.16 -1.88 16 14 C -0.13 -2.23 5.36 -28.43 -0.15 -2.38 16 15 C 0.19 3.63 2.33 -70.68 -0.16 3.46 16 16 H 0.04 0.84 7.98 -51.93 -0.41 0.43 16 17 N -0.73 -17.46 4.99 -56.13 -0.28 -17.74 16 18 C -0.23 -6.33 9.40 -15.06 -0.14 -6.47 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 22 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.09 -1.48 2.23 -91.15 -0.20 -1.68 16 27 H 0.08 1.55 8.07 -51.93 -0.42 1.13 16 28 C 0.11 1.75 5.83 -2.62 -0.02 1.73 16 29 N -0.45 -5.43 6.78 -6.06 -0.04 -5.47 16 30 C 0.12 1.18 6.78 -82.60 -0.56 0.62 16 31 C -0.11 -0.71 9.35 36.01 0.34 -0.37 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.08 0.29 6.72 -51.93 -0.35 -0.06 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 37 H 0.07 0.95 7.08 -51.93 -0.37 0.59 16 38 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.42 7.60 -51.93 -0.39 1.02 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.38 9.80 7.73 -40.82 -0.32 9.48 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 48 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.35 6.70 -51.93 -0.35 0.00 16 LS Contribution 397.15 15.07 5.99 5.99 Total: -1.00 -32.10 397.15 -10.76 -42.86 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.34 Total: 7.35 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.31 Total: -3.93 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.17 Total: -59.85 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.10 -10.76 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992768477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.085 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds