Wall clock time and date at job start Wed Apr 1 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38625 * 120.32285 * 2 1 4 4 C 1.38593 * 118.48514 * 180.27002 * 3 2 1 5 5 C 1.39306 * 119.06033 * 0.02562 * 4 3 2 6 6 C 1.48172 * 119.72029 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99917 * 359.97354 * 6 5 4 8 8 N 1.34777 * 119.99931 * 179.97438 * 6 5 4 9 9 C 1.47324 * 125.74076 * 359.69239 * 8 6 5 10 10 C 1.55133 * 106.87599 * 179.90883 * 9 8 6 11 11 H 1.08997 * 112.80351 * 215.56499 * 10 9 8 12 12 C 1.51220 * 106.33159 * 92.78742 * 10 9 8 13 13 C 1.52247 * 109.96240 * 191.70891 * 12 10 9 14 14 C 1.51849 * 110.43075 * 61.62969 * 13 12 10 15 15 C 1.50777 * 112.96003 * 306.82681 * 14 13 12 16 16 H 1.09003 * 108.11722 * 164.31504 * 15 14 13 17 17 N 1.46496 * 107.95690 * 280.90363 * 15 14 13 18 18 C 1.36939 * 120.00102 * 281.56424 * 17 15 14 19 19 H 1.07998 * 119.99665 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00318 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47143 * 90.00295 * 22 20 18 24 24 H 1.48496 * 109.47243 * 210.00512 * 22 20 18 25 25 H 1.48500 * 109.46955 * 330.00301 * 22 20 18 26 26 C 1.49693 * 116.27926 * 42.54782 * 15 14 13 27 27 H 1.09000 * 109.18275 * 198.01541 * 26 15 14 28 28 C 1.47811 * 125.74105 * 179.97438 * 8 6 5 29 29 N 1.32711 * 120.55500 * 359.97438 * 5 4 3 30 30 C 1.31519 * 121.64495 * 0.02562 * 29 5 4 31 31 C 1.50703 * 119.55319 * 180.02562 * 30 29 5 32 32 H 1.08998 * 109.47090 * 269.71997 * 1 2 3 33 33 H 1.08999 * 109.47342 * 29.72376 * 1 2 3 34 34 H 1.08998 * 109.47105 * 149.72674 * 1 2 3 35 35 H 1.07998 * 120.75621 * 0.25524 * 3 2 1 36 36 H 1.08001 * 120.46351 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.97629 * 299.39078 * 9 8 6 38 38 H 1.09004 * 109.97919 * 60.67622 * 9 8 6 39 39 H 1.08996 * 109.57619 * 71.49955 * 12 10 9 40 40 H 1.09005 * 109.25654 * 311.71666 * 12 10 9 41 41 H 1.09001 * 109.31358 * 301.33732 * 13 12 10 42 42 H 1.08994 * 109.31010 * 181.92523 * 13 12 10 43 43 H 1.09002 * 108.78417 * 185.93013 * 14 13 12 44 44 H 1.08998 * 108.78322 * 67.72820 * 14 13 12 45 45 H 0.96996 * 120.00083 * 101.56518 * 17 15 14 46 46 H 0.97001 * 119.99265 * 180.02562 * 21 20 18 47 47 H 1.09005 * 110.51463 * 322.97418 * 28 8 6 48 48 H 1.09002 * 110.51636 * 85.69543 * 28 8 6 49 49 H 1.09004 * 109.46903 * 269.98042 * 31 30 29 50 50 H 1.08999 * 109.46699 * 29.97223 * 31 30 29 51 51 H 1.08994 * 109.47580 * 149.97567 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 -0.0057 5 6 4.2293 -0.0866 -0.0118 6 6 5.7096 -0.1512 -0.0174 7 8 6.3625 0.8737 -0.0172 8 7 6.3320 -1.3466 -0.0228 9 6 5.6687 -2.6621 -0.0174 10 6 6.7915 -3.7326 -0.0293 11 1 6.5275 -4.6152 -0.6119 12 6 7.0648 -4.0783 1.4173 13 6 8.3416 -4.9008 1.5228 14 6 9.5294 -4.1035 1.0137 15 6 9.3156 -3.5499 -0.3724 16 1 10.0655 -2.7786 -0.5487 17 7 9.5462 -4.6327 -1.3318 18 6 10.8251 -4.9974 -1.6583 19 1 11.6637 -4.4870 -1.2083 20 6 11.0436 -6.0238 -2.5670 21 7 10.0215 -6.6461 -3.1151 22 14 12.7881 -6.5217 -3.0119 23 1 13.2529 -7.5815 -2.0813 24 1 12.8157 -7.0383 -4.4038 25 1 13.6825 -5.3412 -2.9042 26 6 7.9678 -2.9609 -0.6502 27 1 7.8215 -2.8938 -1.7282 28 6 7.7948 -1.5584 -0.0293 29 7 3.5217 -1.2093 -0.0116 30 6 2.2066 -1.1961 -0.0062 31 6 1.4501 -2.4995 -0.0057 32 1 -0.3633 -0.0050 1.0276 33 1 -0.3634 0.8924 -0.5095 34 1 -0.3633 -0.8875 -0.5181 35 1 1.6846 2.1419 0.0041 36 1 4.1692 2.0650 -0.0063 37 1 5.0597 -2.7684 0.8803 38 1 5.0456 -2.7687 -0.9053 39 1 6.2307 -4.6533 1.8192 40 1 7.1794 -3.1587 1.9912 41 1 8.2357 -5.8087 0.9289 42 1 8.5100 -5.1729 2.5647 43 1 10.4070 -4.7500 1.0019 44 1 9.7154 -3.2755 1.6976 45 1 8.7930 -5.0913 -1.7357 46 1 10.1742 -7.3636 -3.7498 47 1 8.2872 -0.8051 -0.6443 48 1 8.1880 -1.5398 0.9872 49 1 1.2632 -2.8115 -1.0332 50 1 2.0398 -3.2615 0.5039 51 1 0.5003 -2.3682 0.5126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992768477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:42 Heat of formation + Delta-G solvation = -9.234723 kcal Electronic energy + Delta-G solvation = -30659.521712 eV Core-core repulsion = 26750.730536 eV Total energy + Delta-G solvation = -3908.791176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08863 -41.20084 -39.67209 -37.13373 -35.29953 -34.86786 -34.00888 -33.31072 -31.96060 -30.87899 -29.27786 -28.57512 -27.78750 -26.23405 -24.93008 -23.72883 -23.36488 -22.78840 -22.29331 -20.82554 -19.42653 -19.15777 -18.52705 -17.61012 -17.22362 -16.88661 -16.53860 -16.27200 -16.06201 -15.57021 -15.46994 -15.31664 -15.18247 -14.91339 -14.80055 -14.20410 -14.11431 -13.99757 -13.89311 -13.67095 -13.47458 -13.29085 -13.18549 -13.05388 -12.94699 -12.82687 -12.68868 -12.63261 -12.42320 -12.31192 -12.16183 -11.96101 -11.78945 -11.45633 -11.25325 -11.21624 -10.90735 -10.76362 -10.71061 -10.36762 -9.91608 -9.61228 -8.94171 -7.90311 -5.16704 -0.40740 0.22689 1.47509 1.48218 1.56335 1.60845 1.80188 2.57901 2.76591 2.94936 3.38890 3.43518 3.52628 3.66187 3.77553 3.80950 3.88779 3.96205 4.08743 4.19496 4.25479 4.26227 4.36189 4.43060 4.55747 4.57558 4.61927 4.67786 4.70780 4.80107 4.81826 4.83079 4.84759 4.86760 4.92119 4.96014 5.03339 5.09089 5.13612 5.18123 5.20296 5.23209 5.28689 5.32230 5.43077 5.51085 5.53504 5.67085 5.69917 5.71598 6.32139 6.37086 6.68892 7.01093 7.38884 8.15108 8.39697 9.33189 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002499 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.283405 B =11202.190846 C =11506.243073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.081 4.081 4 C -0.122 4.122 5 C 0.052 3.948 6 C 0.575 3.425 7 O -0.577 6.577 8 N -0.597 5.597 9 C 0.136 3.864 10 C -0.090 4.090 11 H 0.090 0.910 12 C -0.099 4.099 13 C -0.104 4.104 14 C -0.121 4.121 15 C 0.191 3.809 16 H 0.028 0.972 17 N -0.734 5.734 18 C -0.230 4.230 19 H 0.071 0.929 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.082 4.082 27 H 0.059 0.941 28 C 0.120 3.880 29 N -0.464 5.464 30 C 0.109 3.891 31 C -0.104 4.104 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.373 0.627 46 H 0.249 0.751 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.308 12.537 11.045 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.106 4.106 4 C -0.143 4.143 5 C -0.085 4.085 6 C 0.364 3.636 7 O -0.458 6.458 8 N -0.328 5.328 9 C 0.014 3.986 10 C -0.109 4.109 11 H 0.109 0.891 12 C -0.136 4.136 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.083 3.917 16 H 0.046 0.954 17 N -0.375 5.375 18 C -0.362 4.362 19 H 0.089 0.911 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.102 4.102 27 H 0.077 0.923 28 C -0.003 4.003 29 N -0.176 5.176 30 C -0.032 4.032 31 C -0.161 4.161 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.205 0.795 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.094 0.906 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.310 12.374 11.037 28.606 hybrid contribution 1.061 0.196 -0.918 1.417 sum -22.249 12.571 10.119 27.485 Atomic orbital electron populations 1.20950 0.87013 1.04890 1.04181 1.21419 0.99713 0.92753 0.97001 1.21866 0.92347 1.00151 0.96215 1.22180 0.96316 0.97995 0.97826 1.20767 0.92595 0.90997 1.04160 1.18010 0.86999 0.82056 0.76554 1.90737 1.67078 1.34469 1.53479 1.48507 1.07801 1.06368 1.70083 1.22416 0.93796 0.79268 1.03085 1.21865 0.93643 0.97405 0.97939 0.89142 1.21100 0.97831 1.00121 0.94538 1.20946 0.94564 0.98253 1.00396 1.21323 0.98654 0.99460 0.96672 1.19076 0.93472 0.89491 0.89682 0.95395 1.42697 1.04411 1.39991 1.50361 1.19547 0.86008 1.12378 1.18263 0.91073 1.25432 1.00426 0.99991 1.00906 1.69808 1.30349 1.27293 1.34473 0.85249 0.80581 0.78035 0.76594 1.21550 1.22465 1.19852 1.21307 0.95373 0.93852 0.99643 0.92250 1.22220 0.80332 0.96310 1.01442 1.67582 1.09139 1.29722 1.11181 1.21838 0.88678 0.97258 0.95448 1.20875 0.99837 0.91293 1.04138 0.88946 0.89646 0.89409 0.80905 0.83960 0.89288 0.91271 0.89906 0.91794 0.94012 0.91191 0.93844 0.92065 0.79536 0.94249 0.91650 0.89936 0.89448 0.90645 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.20 71.24 0.66 0.12 16 2 C -0.11 -1.36 5.91 -19.69 -0.12 -1.48 16 3 C -0.08 -1.13 9.85 22.45 0.22 -0.91 16 4 C -0.12 -2.62 9.63 22.61 0.22 -2.40 16 5 C 0.05 1.37 6.72 41.91 0.28 1.65 16 6 C 0.57 18.63 7.85 86.88 0.68 19.31 16 7 O -0.58 -21.82 16.60 -3.76 -0.06 -21.88 16 8 N -0.60 -18.20 3.34 -812.55 -2.71 -20.92 16 9 C 0.14 3.60 4.75 86.95 0.41 4.01 16 10 C -0.09 -2.57 3.43 -10.38 -0.04 -2.60 16 11 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 12 C -0.10 -2.50 4.62 29.76 0.14 -2.37 16 13 C -0.10 -3.15 5.89 29.97 0.18 -2.97 16 14 C -0.12 -4.25 5.36 29.49 0.16 -4.09 16 15 C 0.19 7.51 2.33 43.21 0.10 7.61 16 16 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16 17 N -0.73 -36.49 4.99 -331.50 -1.65 -38.15 16 18 C -0.23 -12.75 9.40 84.03 0.79 -11.96 16 19 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 22 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.08 -2.79 2.23 -11.14 -0.02 -2.82 16 27 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 28 C 0.12 3.78 5.83 86.59 0.51 4.29 16 29 N -0.46 -10.83 6.78 -173.08 -1.17 -12.00 16 30 C 0.11 1.84 6.78 42.68 0.29 2.13 16 31 C -0.10 -1.09 9.35 71.24 0.67 -0.43 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.22 8.09 -2.39 -0.02 0.20 16 34 H 0.09 0.26 6.72 -2.39 -0.02 0.24 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.14 3.06 7.64 -2.91 -0.02 3.04 16 37 H 0.09 2.13 7.08 -2.39 -0.02 2.11 16 38 H 0.07 1.89 7.48 -2.39 -0.02 1.87 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.57 6.97 -2.38 -0.02 1.55 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.75 7.60 -2.39 -0.02 1.73 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.37 19.88 7.73 -92.71 -0.72 19.16 16 46 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.06 2.23 8.05 -2.38 -0.02 2.21 16 48 H 0.08 2.43 7.45 -2.39 -0.02 2.41 16 49 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.10 0.52 6.70 -2.39 -0.02 0.50 16 Total: -1.00 -72.22 397.15 2.50 -69.72 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.21 Total: 30.16 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.58 Total: 3.21 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -5.26 Total: -130.04 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -72.22 2.50 -69.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992768477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.484 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds