Wall clock time and date at job start Wed Apr 1 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31884 * 119.61451 * 2 1 4 4 C 1.31858 * 121.72497 * 180.02562 * 3 2 1 5 5 C 1.38227 * 120.76350 * 359.97438 * 4 3 2 6 6 C 1.38627 * 119.15893 * 359.77351 * 5 4 3 7 7 C 1.38183 * 119.61999 * 180.02562 * 2 1 3 8 8 C 1.50691 * 120.41582 * 359.96993 * 7 2 1 9 9 C 1.50702 * 109.46953 * 85.00613 * 8 7 2 10 10 O 1.21280 * 119.99955 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99935 * 179.97438 * 9 8 7 12 12 C 1.47369 * 125.74885 * 0.02562 * 11 9 8 13 13 C 1.55431 * 106.74511 * 181.02325 * 12 11 9 14 14 H 1.09000 * 112.50622 * 213.27028 * 13 12 11 15 15 C 1.52988 * 106.45250 * 89.98991 * 13 12 11 16 16 C 1.52605 * 111.02153 * 197.04548 * 15 13 12 17 17 C 1.53307 * 108.45365 * 62.28420 * 16 15 13 18 18 C 1.52812 * 108.15958 * 296.15473 * 17 16 15 19 19 H 1.08999 * 109.04728 * 179.63435 * 18 17 16 20 20 N 1.46506 * 109.04324 * 298.58420 * 18 17 16 21 21 C 1.36929 * 119.99807 * 274.99627 * 20 18 17 22 22 H 1.08004 * 120.00341 * 0.27647 * 21 20 18 23 23 C 1.38815 * 120.00031 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47093 * 60.00562 * 25 23 21 27 27 H 1.48495 * 109.47002 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00281 * 25 23 21 29 29 C 1.50861 * 111.66293 * 59.14303 * 18 17 16 30 30 H 1.08994 * 109.65447 * 184.89940 * 29 18 17 31 31 C 1.47940 * 125.74269 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.46670 * 269.97751 * 1 2 3 33 33 H 1.08997 * 109.47075 * 29.98136 * 1 2 3 34 34 H 1.08999 * 109.46968 * 149.98109 * 1 2 3 35 35 H 1.07998 * 119.61672 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.41789 * 179.97438 * 5 4 3 37 37 H 1.08002 * 120.78299 * 180.23633 * 6 5 4 38 38 H 1.08996 * 109.48096 * 325.00673 * 8 7 2 39 39 H 1.09003 * 109.47597 * 204.99995 * 8 7 2 40 40 H 1.09006 * 110.00823 * 61.70050 * 12 11 9 41 41 H 1.09002 * 110.04409 * 300.36743 * 12 11 9 42 42 H 1.09000 * 109.17258 * 76.64430 * 15 13 12 43 43 H 1.08999 * 109.12856 * 317.40846 * 15 13 12 44 44 H 1.09002 * 109.63440 * 302.60060 * 16 15 13 45 45 H 1.08997 * 109.81027 * 182.08124 * 16 15 13 46 46 H 1.09006 * 109.72530 * 176.48815 * 17 16 15 47 47 H 1.09001 * 109.76401 * 55.84526 * 17 16 15 48 48 H 0.96999 * 120.00076 * 94.99690 * 20 18 17 49 49 H 0.97000 * 120.00284 * 179.97438 * 24 23 21 50 50 H 1.08993 * 110.56964 * 323.10102 * 31 11 9 51 51 H 1.09001 * 110.56203 * 85.96450 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5766 -1.1902 0.0048 7 6 2.1900 -1.2013 -0.0005 8 6 1.4374 -2.5067 -0.0004 9 6 1.0787 -2.8799 -1.4158 10 8 1.4020 -2.1566 -2.3341 11 7 0.3986 -4.0174 -1.6611 12 6 -0.0560 -4.9846 -0.6464 13 6 -0.7660 -6.1361 -1.4118 14 1 -1.5928 -6.5655 -0.8460 15 6 0.3130 -7.1716 -1.7345 16 6 -0.1562 -8.1289 -2.8265 17 6 -0.4107 -7.3205 -4.1039 18 6 -1.5545 -6.3448 -3.8301 19 1 -1.7435 -5.7571 -4.7285 20 7 -2.7610 -7.1048 -3.4939 21 6 -3.5717 -7.5785 -4.4905 22 1 -3.3194 -7.3957 -5.5246 23 6 -4.7146 -8.2990 -4.1720 24 7 -5.0193 -8.5265 -2.9119 25 14 -5.8202 -8.9458 -5.5317 26 1 -5.0466 -9.8669 -6.4026 27 1 -6.9661 -9.6760 -4.9327 28 1 -6.3271 -7.8084 -6.3408 29 6 -1.2285 -5.4100 -2.6918 30 1 -2.0957 -4.7888 -2.4677 31 6 -0.0181 -4.5047 -2.9944 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 3.9752 2.1530 -0.0001 36 1 5.3058 0.0805 -0.0013 37 1 4.1369 -2.1135 0.0087 38 1 0.5268 -2.4013 0.5893 39 1 2.0629 -3.2869 0.4334 40 1 -0.7555 -4.5054 0.0387 41 1 0.7983 -5.3754 -0.0936 42 1 0.5433 -7.7411 -0.8341 43 1 1.2125 -6.6569 -2.0722 44 1 -1.0782 -8.6186 -2.5130 45 1 0.6116 -8.8794 -3.0146 46 1 -0.6874 -7.9931 -4.9159 47 1 0.4882 -6.7669 -4.3751 48 1 -2.9855 -7.2724 -2.5652 49 1 -5.8181 -9.0297 -2.6893 50 1 -0.3130 -3.6711 -3.6318 51 1 0.7829 -5.0791 -3.4596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992810064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:02 Heat of formation + Delta-G solvation = -14.707239 kcal Electronic energy + Delta-G solvation = -30478.970972 eV Core-core repulsion = 26569.942490 eV Total energy + Delta-G solvation = -3909.028482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88176 -41.21185 -39.68826 -36.96786 -35.05166 -34.77773 -33.89631 -33.09072 -31.89696 -30.97509 -29.66072 -28.29340 -27.60537 -26.11363 -24.66987 -23.54591 -23.19124 -22.68345 -22.29464 -20.20212 -19.35198 -19.18316 -18.11270 -17.83450 -17.42034 -17.10451 -16.51770 -16.46660 -16.05184 -15.74165 -15.36339 -15.29048 -15.18784 -15.01569 -14.75202 -14.16169 -14.05441 -14.02897 -13.94788 -13.72279 -13.36134 -13.26340 -13.22453 -13.05066 -12.90316 -12.74546 -12.66240 -12.58995 -12.36230 -12.30642 -12.20767 -11.99787 -11.77769 -11.32802 -11.13314 -11.05111 -10.83359 -10.66223 -10.60857 -10.39069 -9.71549 -9.62415 -8.93351 -7.90214 -5.15704 0.14538 0.37001 1.48286 1.49430 1.55266 1.61474 1.97169 2.58365 2.83996 3.40610 3.42446 3.44739 3.52768 3.62940 3.79812 3.88552 3.90628 3.98108 4.12290 4.15651 4.24346 4.33845 4.39644 4.44580 4.49163 4.53802 4.56429 4.61036 4.64796 4.66712 4.69077 4.69931 4.81014 4.83837 4.86341 4.89481 4.93501 5.10212 5.12459 5.18429 5.21714 5.25222 5.31087 5.33055 5.43651 5.50351 5.55014 5.65867 5.75111 5.82005 6.32665 6.54458 7.06682 7.14166 7.40137 8.16780 8.41746 9.32671 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.002285 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.141285 B =12253.138073 C =12727.897268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 N -0.518 5.518 4 C 0.084 3.916 5 C -0.178 4.178 6 C -0.070 4.070 7 C -0.129 4.129 8 C -0.087 4.087 9 C 0.528 3.472 10 O -0.584 6.584 11 N -0.614 5.614 12 C 0.103 3.897 13 C -0.087 4.087 14 H 0.091 0.909 15 C -0.100 4.100 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.186 3.814 19 H 0.029 0.971 20 N -0.725 5.725 21 C -0.233 4.233 22 H 0.068 0.932 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.962 3.038 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.283 1.283 29 C -0.088 4.088 30 H 0.061 0.939 31 C 0.121 3.879 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.376 0.624 49 H 0.249 0.751 50 H 0.057 0.943 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.748 11.568 11.933 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.131 4.131 8 C -0.127 4.127 9 C 0.318 3.682 10 O -0.465 6.465 11 N -0.347 5.347 12 C -0.019 4.019 13 C -0.105 4.105 14 H 0.109 0.891 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.077 3.923 19 H 0.048 0.952 20 N -0.366 5.366 21 C -0.365 4.365 22 H 0.086 0.914 23 C -0.264 4.264 24 N -0.616 5.616 25 Si 0.793 3.207 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.210 1.210 29 C -0.108 4.108 30 H 0.080 0.920 31 C -0.002 4.002 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.193 0.807 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.209 0.791 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.409 12.779 11.306 25.843 hybrid contribution -0.812 -1.279 -0.942 1.784 sum 18.597 11.501 10.364 24.198 Atomic orbital electron populations 1.20752 0.88660 1.02988 1.03779 1.21363 0.97553 0.88324 0.94531 1.67503 1.11500 1.29826 1.14020 1.23215 0.89056 1.00155 0.94794 1.22432 1.02903 0.92734 1.01677 1.21843 0.93387 0.99942 0.94398 1.20305 0.95035 0.95075 1.02672 1.20657 1.03414 0.95685 0.92903 1.20679 0.76757 0.78893 0.91886 1.90721 1.55696 1.51854 1.48182 1.48755 1.55101 1.21886 1.08979 1.22676 1.00035 0.88732 0.90418 1.22221 0.98153 0.95073 0.95085 0.89064 1.21482 0.97142 0.96214 0.98854 1.21324 1.00308 0.97766 0.95335 1.22076 0.98264 0.98684 0.97784 1.19677 0.86840 0.91015 0.94793 0.95245 1.42472 1.24552 1.63979 1.05590 1.19502 1.02042 1.25835 0.89130 0.91393 1.25371 1.00399 1.02702 0.97921 1.69768 1.27923 1.46894 1.17001 0.85374 0.78482 0.78013 0.78867 1.20794 1.22298 1.20969 1.21651 0.96741 0.96191 0.96261 0.92044 1.22092 0.96181 0.96555 0.85348 0.88321 0.91401 0.91384 0.80662 0.81817 0.82580 0.85639 0.84604 0.89594 0.87824 0.90213 0.91301 0.93804 0.91984 0.94449 0.91265 0.79087 0.94197 0.92406 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 9.39 71.24 0.67 -1.42 16 2 C 0.12 2.76 6.78 42.54 0.29 3.04 16 3 N -0.52 -12.68 10.27 -183.88 -1.89 -14.56 16 4 C 0.08 1.57 11.18 84.69 0.95 2.52 16 5 C -0.18 -2.69 10.11 22.36 0.23 -2.47 16 6 C -0.07 -1.15 9.84 22.47 0.22 -0.93 16 7 C -0.13 -2.51 4.39 -19.78 -0.09 -2.60 16 8 C -0.09 -1.31 4.36 29.10 0.13 -1.18 16 9 C 0.53 12.42 7.07 87.66 0.62 13.04 16 10 O -0.58 -19.38 16.31 -3.03 -0.05 -19.43 16 11 N -0.61 -13.53 3.34 -808.86 -2.70 -16.23 16 12 C 0.10 1.71 5.80 87.05 0.50 2.22 16 13 C -0.09 -2.04 3.26 -9.53 -0.03 -2.07 16 14 H 0.09 2.40 7.93 -2.39 -0.02 2.38 16 15 C -0.10 -2.19 4.60 30.46 0.14 -2.05 16 16 C -0.11 -3.24 5.85 30.57 0.18 -3.06 16 17 C -0.13 -4.19 5.43 30.63 0.17 -4.03 16 18 C 0.19 6.84 2.53 44.23 0.11 6.96 16 19 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 20 N -0.73 -34.13 4.17 -326.55 -1.36 -35.49 16 21 C -0.23 -12.53 9.91 84.04 0.83 -11.70 16 22 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.96 -57.02 13.06 21.65 0.28 -56.74 16 25 Si 0.96 45.71 29.55 68.60 2.03 47.74 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 29 C -0.09 -2.62 2.44 -10.67 -0.03 -2.65 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 C 0.12 3.24 5.80 86.49 0.50 3.74 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.39 6.15 -2.39 -0.01 1.38 16 35 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.13 1.42 7.00 -2.39 -0.02 1.41 16 39 H 0.14 1.16 8.06 -2.39 -0.02 1.14 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.10 1.11 7.77 -2.39 -0.02 1.09 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.37 6.92 -2.39 -0.02 1.35 16 44 H 0.04 1.62 7.36 -2.39 -0.02 1.61 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.07 1.92 6.69 -2.39 -0.02 1.90 16 48 H 0.38 18.73 7.20 -92.71 -0.67 18.06 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 51 H 0.08 2.00 5.78 -2.39 -0.01 1.99 16 Total: -1.00 -73.41 396.57 2.43 -70.98 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.26 Total: 29.88 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.86 Total: -6.16 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.67 Total: -123.02 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.41 2.43 -70.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992810064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.274 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds