Wall clock time and date at job start Wed Apr 1 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31886 * 119.61529 * 2 1 4 4 C 1.31856 * 121.72472 * 179.97438 * 3 2 1 5 5 C 1.38219 * 120.76616 * 0.02562 * 4 3 2 6 6 C 1.38630 * 119.15982 * 359.97438 * 5 4 3 7 7 C 1.38175 * 119.61835 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.41873 * 0.04352 * 7 2 1 9 9 C 1.50701 * 109.46810 * 84.95767 * 8 7 2 10 10 O 1.21274 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99694 * 180.02562 * 9 8 7 12 12 C 1.48667 * 125.78386 * 359.68757 * 11 9 8 13 13 C 1.53292 * 103.33067 * 155.56905 * 12 11 9 14 14 H 1.09006 * 111.53873 * 284.28568 * 13 12 11 15 15 C 1.51609 * 116.58745 * 156.06963 * 13 12 11 16 16 C 1.53812 * 107.01898 * 183.90657 * 15 13 12 17 17 C 1.52533 * 111.69865 * 57.54001 * 16 15 13 18 18 C 1.53860 * 112.02486 * 306.20642 * 17 16 15 19 19 H 1.09001 * 110.24548 * 176.06401 * 18 17 16 20 20 N 1.46505 * 109.64528 * 297.29973 * 18 17 16 21 21 C 1.36938 * 119.99888 * 207.16708 * 20 18 17 22 22 H 1.07997 * 120.00230 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31616 * 119.99871 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00023 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47009 * 90.00315 * 25 23 21 27 27 H 1.48497 * 109.46891 * 210.00119 * 25 23 21 28 28 H 1.48496 * 109.47029 * 330.00361 * 25 23 21 29 29 C 1.51441 * 107.03358 * 56.51066 * 18 17 16 30 30 H 1.09000 * 109.87188 * 55.07369 * 29 18 17 31 31 C 1.48237 * 125.78457 * 180.02562 * 11 9 8 32 32 H 1.08997 * 109.46651 * 90.00173 * 1 2 3 33 33 H 1.08998 * 109.46944 * 210.00371 * 1 2 3 34 34 H 1.09000 * 109.47037 * 330.00405 * 1 2 3 35 35 H 1.08002 * 119.61854 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.42528 * 179.97438 * 5 4 3 37 37 H 1.08003 * 120.79047 * 179.72356 * 6 5 4 38 38 H 1.08999 * 109.46993 * 204.95937 * 8 7 2 39 39 H 1.08998 * 109.46805 * 324.95458 * 8 7 2 40 40 H 1.08994 * 110.62610 * 274.14048 * 12 11 9 41 41 H 1.08992 * 110.62447 * 37.16730 * 12 11 9 42 42 H 1.08996 * 109.94539 * 303.28722 * 15 13 12 43 43 H 1.09006 * 109.94489 * 64.53023 * 15 13 12 44 44 H 1.09006 * 109.03391 * 178.10774 * 16 15 13 45 45 H 1.08993 * 109.04037 * 297.04252 * 16 15 13 46 46 H 1.08999 * 109.03936 * 66.51608 * 17 16 15 47 47 H 1.09000 * 109.03884 * 185.46191 * 17 16 15 48 48 H 0.96994 * 120.00489 * 27.16570 * 20 18 17 49 49 H 0.96996 * 120.00200 * 179.97438 * 24 23 21 50 50 H 1.08999 * 110.17275 * 295.88074 * 31 11 9 51 51 H 1.09003 * 110.17714 * 57.68286 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 0.0005 5 6 4.2267 0.0343 0.0005 6 6 3.5766 -1.1902 0.0005 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0001 9 6 1.0791 -2.8797 -1.4154 10 8 1.4036 -2.1567 -2.3335 11 7 0.3983 -4.0166 -1.6611 12 6 -0.0559 -4.9959 -0.6389 13 6 -1.2429 -5.6896 -1.3170 14 1 -2.1285 -5.0541 -1.3216 15 6 -1.5895 -7.0800 -0.8218 16 6 -2.7330 -7.6016 -1.7084 17 6 -2.3439 -7.6108 -3.1832 18 6 -1.8389 -6.2362 -3.6553 19 1 -1.5042 -6.2927 -4.6911 20 7 -2.9122 -5.2471 -3.5290 21 6 -2.9335 -4.1513 -4.3499 22 1 -2.1589 -4.0159 -5.0901 23 6 -3.9503 -3.2138 -4.2298 24 7 -3.9711 -2.1608 -5.0192 25 14 -5.2897 -3.4476 -2.9490 26 1 -4.8786 -2.7978 -1.6786 27 1 -6.5512 -2.8323 -3.4341 28 1 -5.5042 -4.8984 -2.7162 29 6 -0.6794 -5.8574 -2.7578 30 1 0.0734 -6.6456 -2.7724 31 6 -0.0184 -4.5060 -2.9968 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 3.9753 2.1530 0.0001 36 1 5.3057 0.0804 0.0005 37 1 4.1368 -2.1135 -0.0039 38 1 2.0627 -3.2869 0.4343 39 1 0.5265 -2.4013 0.5896 40 1 0.7344 -5.7126 -0.4160 41 1 -0.3779 -4.4833 0.2675 42 1 -0.7219 -7.7336 -0.9113 43 1 -1.9160 -7.0340 0.2172 44 1 -2.9865 -8.6163 -1.4013 45 1 -3.6056 -6.9620 -1.5761 46 1 -1.5530 -8.3447 -3.3377 47 1 -3.2123 -7.8934 -3.7784 48 1 -3.6078 -5.3684 -2.8640 49 1 -4.6817 -1.5059 -4.9356 50 1 -0.7307 -3.8136 -3.4455 51 1 0.8518 -4.6221 -3.6430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992810070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:11 Heat of formation + Delta-G solvation = 13.593960 kcal Electronic energy + Delta-G solvation = -31290.888707 eV Core-core repulsion = 27383.087456 eV Total energy + Delta-G solvation = -3907.801250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66230 -40.09054 -38.44473 -35.51093 -33.83529 -33.73862 -32.97052 -31.53254 -30.66851 -29.55152 -28.57909 -27.32098 -26.83067 -24.59866 -23.04597 -22.56550 -21.84450 -21.11536 -20.83329 -19.02149 -18.84545 -17.64209 -16.92549 -16.75949 -16.40610 -15.83915 -15.24157 -14.88138 -14.79933 -14.45827 -14.36438 -14.29890 -13.95105 -13.53350 -13.18882 -13.17038 -12.99286 -12.78162 -12.60056 -12.48078 -12.41151 -12.23993 -12.06278 -11.95353 -11.77908 -11.57854 -11.33599 -11.29250 -10.99352 -10.83058 -10.53290 -10.40484 -10.16766 -10.08711 -9.86390 -9.55262 -9.52142 -9.45990 -9.42309 -8.94670 -8.76592 -8.25415 -7.30559 -5.77619 -3.13446 1.08617 1.28082 2.91850 3.21010 3.32964 3.34398 3.42558 3.80431 4.30822 4.53955 4.56078 4.57045 4.70334 4.75920 4.83678 4.90240 4.94565 5.04074 5.21166 5.26442 5.30214 5.33080 5.44267 5.47120 5.53139 5.58977 5.60477 5.62261 5.63640 5.68961 5.77882 5.80801 5.83429 5.87257 5.94756 6.10692 6.11524 6.17314 6.17829 6.23348 6.28678 6.41522 6.44671 6.49875 6.65042 6.69929 6.72286 6.76121 7.00038 7.83515 7.97678 8.01979 8.40715 8.47473 9.18740 9.90936 10.10290 11.40314 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003664 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.191930 B = 7640.624374 C = 8997.396684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.150 3.850 3 N -0.485 5.485 4 C 0.099 3.901 5 C -0.183 4.183 6 C -0.062 4.062 7 C -0.115 4.115 8 C -0.096 4.096 9 C 0.526 3.474 10 O -0.532 6.532 11 N -0.616 5.616 12 C 0.110 3.890 13 C -0.107 4.107 14 H 0.098 0.902 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.194 3.806 19 H 0.063 0.937 20 N -0.741 5.741 21 C -0.245 4.245 22 H 0.092 0.908 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.116 4.116 30 H 0.064 0.936 31 C 0.115 3.885 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.106 0.894 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.398 -7.203 14.948 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.013 3.987 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.203 4.203 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.137 4.137 9 C 0.314 3.686 10 O -0.408 6.408 11 N -0.350 5.350 12 C -0.013 4.013 13 C -0.126 4.126 14 H 0.116 0.884 15 C -0.138 4.138 16 C -0.153 4.153 17 C -0.164 4.164 18 C 0.083 3.917 19 H 0.081 0.919 20 N -0.384 5.384 21 C -0.374 4.374 22 H 0.109 0.891 23 C -0.187 4.187 24 N -0.575 5.575 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.138 4.138 30 H 0.083 0.917 31 C -0.006 4.006 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.124 0.876 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.168 -5.767 14.251 19.607 hybrid contribution -0.418 -0.874 0.883 1.311 sum 11.751 -6.641 15.134 20.278 Atomic orbital electron populations 1.20827 0.88845 1.03042 1.04150 1.21094 0.96971 0.87656 0.93011 1.67529 1.10022 1.29113 1.12803 1.22697 0.89549 0.98352 0.95179 1.22023 1.01205 0.93413 1.03632 1.21390 0.93515 0.98480 0.95363 1.20090 0.94176 0.95002 1.02416 1.20634 1.01803 0.95343 0.95896 1.19941 0.78113 0.79980 0.90584 1.90746 1.53724 1.50044 1.46292 1.49141 1.55336 1.21304 1.09253 1.22102 0.96385 0.91328 0.91467 1.22110 0.98168 0.96696 0.95588 0.88433 1.21305 0.98637 0.95252 0.98607 1.21472 0.98278 1.00380 0.95201 1.21848 1.01088 0.97816 0.95603 1.19877 0.87520 0.87610 0.96651 0.91896 1.42794 1.27820 1.25009 1.42747 1.19035 1.09034 0.97063 1.12288 0.89053 1.24649 0.98408 0.96903 0.98714 1.69691 1.34717 1.12624 1.40496 0.86669 0.82959 0.77289 0.82305 1.21167 1.21801 1.20355 1.22573 0.98301 0.95763 0.97152 0.91740 1.21854 0.98903 0.96708 0.83161 0.89399 0.90828 0.90459 0.82935 0.84975 0.85143 0.88287 0.87661 0.91641 0.91166 0.91936 0.92176 0.92507 0.92176 0.92337 0.91700 0.80518 0.93047 0.87609 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.77 36.01 0.35 -1.24 16 2 C 0.15 2.27 6.78 -82.59 -0.56 1.71 16 3 N -0.49 -7.41 10.27 -9.48 -0.10 -7.51 16 4 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 5 C -0.18 -2.01 10.11 -39.44 -0.40 -2.41 16 6 C -0.06 -0.73 9.84 -39.27 -0.39 -1.12 16 7 C -0.11 -1.56 4.39 -104.48 -0.46 -2.02 16 8 C -0.10 -1.17 4.37 -29.03 -0.13 -1.30 16 9 C 0.53 8.82 7.86 -10.99 -0.09 8.74 16 10 O -0.53 -11.43 16.38 5.56 0.09 -11.34 16 11 N -0.62 -9.80 3.38 -170.73 -0.58 -10.38 16 12 C 0.11 1.32 6.35 -2.69 -0.02 1.31 16 13 C -0.11 -1.45 2.42 -89.78 -0.22 -1.67 16 14 H 0.10 1.65 6.80 -51.93 -0.35 1.29 16 15 C -0.10 -1.09 5.71 -27.01 -0.15 -1.24 16 16 C -0.12 -1.41 5.60 -26.55 -0.15 -1.56 16 17 C -0.13 -1.70 5.47 -26.52 -0.15 -1.84 16 18 C 0.19 3.29 3.03 -68.27 -0.21 3.08 16 19 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 20 N -0.74 -15.75 3.74 -53.75 -0.20 -15.95 16 21 C -0.24 -6.45 8.59 -15.06 -0.13 -6.58 16 22 H 0.09 2.64 7.83 -52.49 -0.41 2.23 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 24 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 25 Si 0.88 21.40 27.74 -169.99 -4.71 16.68 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 29 C -0.12 -1.75 2.09 -90.36 -0.19 -1.94 16 30 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16 31 C 0.11 2.07 6.56 -3.43 -0.02 2.05 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.07 0.90 6.02 -51.93 -0.31 0.58 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.11 1.12 5.92 -51.93 -0.31 0.81 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.72 7.54 -51.93 -0.39 0.33 16 42 H 0.06 0.60 7.99 -51.93 -0.41 0.19 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.36 7.64 4.00 -40.82 -0.16 7.48 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.11 2.43 5.81 -51.93 -0.30 2.13 16 51 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -34.29 392.50 -10.09 -44.38 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.09 Total: 11.06 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.19 Total: -4.83 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.10 Total: -61.86 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.29 -10.09 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992810070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.971 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds