Wall clock time and date at job start Wed Apr 1 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38224 * 119.62113 * 2 1 4 4 C 1.38623 * 119.15813 * 180.02562 * 3 2 1 5 5 C 1.38667 * 118.42661 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.42220 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47377 * 90.00154 * 6 5 4 8 8 O 1.21281 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.48655 * 125.78714 * 359.97406 * 9 7 6 11 11 C 1.53060 * 103.44423 * 155.62459 * 10 9 7 12 12 H 1.09005 * 110.55503 * 283.26628 * 11 10 9 13 13 C 1.51623 * 116.67915 * 155.89188 * 11 10 9 14 14 C 1.53818 * 107.01656 * 182.59586 * 13 11 10 15 15 C 1.52523 * 111.70534 * 57.53345 * 14 13 11 16 16 C 1.53842 * 111.66568 * 305.95904 * 15 14 13 17 17 H 1.09000 * 109.93991 * 297.72973 * 16 15 14 18 18 N 1.46493 * 109.94298 * 176.57564 * 16 15 14 19 19 C 1.36945 * 119.99892 * 84.99790 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31614 * 119.99700 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00020 * 23 21 19 27 27 C 1.51445 * 107.03998 * 57.19311 * 16 15 14 28 28 H 1.08996 * 109.87216 * 54.19416 * 27 16 15 29 29 C 1.48239 * 125.77878 * 179.97438 * 9 7 6 30 30 C 1.38183 * 119.16294 * 0.27692 * 5 4 3 31 31 N 1.31862 * 119.61383 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47314 * 89.99246 * 1 2 3 33 33 H 1.08997 * 109.47523 * 210.00386 * 1 2 3 34 34 H 1.09006 * 109.47093 * 329.99926 * 1 2 3 35 35 H 1.07994 * 120.42069 * 0.02562 * 3 2 1 36 36 H 1.08008 * 120.79078 * 180.02562 * 4 3 2 37 37 H 1.08998 * 109.47430 * 329.99824 * 6 5 4 38 38 H 1.09005 * 109.47028 * 210.00667 * 6 5 4 39 39 H 1.08997 * 110.62721 * 37.13443 * 10 9 7 40 40 H 1.08997 * 110.62607 * 274.11066 * 10 9 7 41 41 H 1.08993 * 109.94125 * 63.21899 * 13 11 10 42 42 H 1.08998 * 109.94144 * 301.96852 * 13 11 10 43 43 H 1.08999 * 109.03126 * 296.95810 * 14 13 11 44 44 H 1.08999 * 108.96926 * 178.06492 * 14 13 11 45 45 H 1.08999 * 109.03921 * 185.39577 * 15 14 13 46 46 H 1.09001 * 108.98178 * 66.48544 * 15 14 13 47 47 H 0.97000 * 120.00738 * 264.73255 * 18 16 15 48 48 H 0.97004 * 120.00256 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.17285 * 295.91517 * 29 9 7 50 50 H 1.09002 * 110.17622 * 57.64503 * 29 9 7 51 51 H 1.08001 * 119.62311 * 179.70273 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1904 -0.0005 5 6 4.2266 -0.0344 -0.0016 6 6 5.7322 -0.0990 -0.0017 7 6 6.2341 -0.1219 1.4191 8 8 5.4466 -0.0894 2.3409 9 7 7.5580 -0.1784 1.6653 10 6 8.6320 -0.2235 0.6384 11 6 9.8510 0.3390 1.3735 12 1 9.7819 1.4239 1.4546 13 6 11.2125 -0.0684 0.8450 14 6 12.2632 0.5606 1.7757 15 6 12.0682 0.1232 3.2238 16 6 10.6358 0.3992 3.7125 17 1 10.4341 1.4701 3.6866 18 7 10.4667 -0.1079 5.0764 19 6 10.8340 0.6658 6.1450 20 1 11.2523 1.6480 5.9820 21 6 10.6685 0.1875 7.4376 22 7 11.0220 0.9309 8.4645 23 14 9.9456 -1.5117 7.7193 24 1 11.0394 -2.5156 7.7538 25 1 9.2154 -1.5308 9.0122 26 1 9.0073 -1.8397 6.6160 27 6 9.6980 -0.3276 2.7713 28 1 9.9744 -1.3803 2.7126 29 6 8.1899 -0.2061 3.0060 30 6 3.4766 -1.1949 -0.0079 31 7 2.1586 -1.1464 -0.0005 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6509 2.1372 0.0004 36 1 4.1367 2.1137 -0.0001 37 1 6.1334 0.7750 -0.5147 38 1 6.0570 -1.0033 -0.5164 39 1 8.3743 0.4043 -0.2145 40 1 8.8156 -1.2496 0.3197 41 1 11.3440 0.3051 -0.1705 42 1 11.3066 -1.1542 0.8581 43 1 12.1843 1.6462 1.7185 44 1 13.2566 0.2586 1.4438 45 1 12.7706 0.6655 3.8567 46 1 12.2710 -0.9449 3.3019 47 1 10.0911 -0.9902 5.2228 48 1 10.9060 0.5969 9.3678 49 1 7.9852 0.7233 3.5373 50 1 7.8186 -1.0558 3.5791 51 1 3.9753 -2.1529 -0.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992923243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:39 Heat of formation + Delta-G solvation = 4.692983 kcal Electronic energy + Delta-G solvation = -29910.225315 eV Core-core repulsion = 26002.038090 eV Total energy + Delta-G solvation = -3908.187225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79912 -40.23856 -38.66493 -35.69154 -34.29606 -34.11474 -32.49571 -31.68406 -31.07452 -29.90464 -29.30915 -27.10575 -26.35007 -24.58474 -23.72947 -22.97311 -21.88554 -20.98143 -20.42259 -19.92667 -19.28078 -17.70595 -16.99328 -16.92992 -16.49056 -16.06649 -15.51694 -15.10017 -14.94582 -14.61641 -14.45608 -14.32820 -14.16405 -13.75404 -13.48230 -13.25271 -13.14152 -12.88308 -12.82872 -12.67020 -12.58309 -12.46093 -12.29460 -12.25162 -11.99870 -11.76933 -11.57745 -11.30545 -11.05493 -10.90565 -10.64167 -10.39676 -10.29962 -10.08612 -10.01241 -9.86940 -9.79168 -9.64798 -9.56676 -8.97340 -8.92323 -8.65483 -7.29185 -5.77897 -3.13902 0.85737 1.10146 2.59424 2.86247 3.38127 3.41269 3.46648 3.57326 4.06119 4.25463 4.39471 4.46393 4.48854 4.58823 4.61765 4.68120 4.74841 4.84376 5.01381 5.07992 5.14921 5.21980 5.23338 5.28468 5.29696 5.33284 5.37964 5.45762 5.49570 5.53934 5.56308 5.67415 5.73974 5.75260 5.76436 5.87467 5.90233 5.96200 6.01041 6.03024 6.09435 6.24012 6.31586 6.34972 6.41089 6.50060 6.51008 6.76713 6.95059 7.47888 7.79618 7.97241 8.13300 8.41005 9.18950 9.91670 10.10524 11.40337 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.002633 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.711349 B =10630.647190 C =12309.564617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.171 4.171 4 C -0.057 4.057 5 C -0.122 4.122 6 C -0.092 4.092 7 C 0.526 3.474 8 O -0.532 6.532 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.106 4.106 12 H 0.087 0.913 13 C -0.101 4.101 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.202 3.798 17 H 0.058 0.942 18 N -0.747 5.747 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.106 4.106 28 H 0.077 0.923 29 C 0.122 3.878 30 C 0.119 3.881 31 N -0.485 5.485 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 -1.187 -25.687 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.190 4.190 4 C -0.083 4.083 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.313 3.687 8 O -0.408 6.408 9 N -0.357 5.357 10 C -0.014 4.014 11 C -0.125 4.125 12 H 0.105 0.895 13 C -0.139 4.139 14 C -0.154 4.154 15 C -0.178 4.178 16 C 0.092 3.908 17 H 0.076 0.924 18 N -0.388 5.388 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.126 4.126 28 H 0.095 0.905 29 C 0.000 4.000 30 C -0.039 4.039 31 N -0.194 5.194 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.394 -1.752 -25.001 27.531 hybrid contribution 0.261 -0.425 0.475 0.689 sum -11.133 -2.177 -24.526 27.023 Atomic orbital electron populations 1.20705 0.88909 1.03541 1.02905 1.21302 0.97037 0.88452 0.94723 1.21905 0.94709 0.99289 1.03140 1.21426 0.94459 0.97709 0.94735 1.20272 0.95196 0.94655 1.02348 1.20555 0.92138 1.05388 0.95131 1.20102 0.80676 0.76869 0.91017 1.90765 1.54260 1.49439 1.46359 1.49203 1.04795 1.73097 1.08586 1.22137 0.87065 1.01065 0.91153 1.22092 0.93742 1.01097 0.95608 0.89514 1.21335 0.93261 1.00815 0.98499 1.21544 0.97855 1.00367 0.95591 1.22272 1.00188 1.01272 0.94059 1.19893 0.90782 0.96560 0.83556 0.92395 1.42766 1.76655 1.18311 1.01116 1.19040 1.34735 0.99344 0.84206 0.89199 1.24659 1.01106 0.97765 0.95437 1.69694 1.53396 1.37047 0.97921 0.86587 0.79130 0.85685 0.77368 1.21149 1.21740 1.20256 1.22312 0.93515 1.00845 0.95911 0.90494 1.21720 0.92049 1.03051 0.83148 1.22544 0.89253 0.97757 0.94296 1.67519 1.09704 1.29389 1.12770 0.90500 0.90473 0.90732 0.84805 0.84940 0.87851 0.87744 0.90556 0.91028 0.91950 0.91637 0.92348 0.92506 0.91434 0.92786 0.80606 0.93056 0.90713 0.91200 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16 2 C 0.12 1.32 6.78 -82.59 -0.56 0.76 16 3 C -0.17 -1.66 9.74 -39.44 -0.38 -2.04 16 4 C -0.06 -0.58 9.86 -39.28 -0.39 -0.97 16 5 C -0.12 -1.31 4.39 -104.48 -0.46 -1.77 16 6 C -0.09 -0.81 4.89 -29.04 -0.14 -0.95 16 7 C 0.53 7.09 7.86 -10.99 -0.09 7.00 16 8 O -0.53 -9.80 16.38 5.56 0.09 -9.71 16 9 N -0.62 -7.89 3.38 -170.40 -0.58 -8.46 16 10 C 0.11 0.96 6.37 -2.82 -0.02 0.94 16 11 C -0.11 -1.11 2.44 -89.89 -0.22 -1.33 16 12 H 0.09 0.96 8.01 -51.93 -0.42 0.54 16 13 C -0.10 -0.94 5.71 -27.00 -0.15 -1.09 16 14 C -0.12 -1.31 5.83 -26.55 -0.15 -1.47 16 15 C -0.14 -2.13 5.45 -26.54 -0.14 -2.27 16 16 C 0.20 3.54 2.55 -68.28 -0.17 3.37 16 17 H 0.06 1.08 7.99 -51.93 -0.42 0.67 16 18 N -0.75 -16.85 4.91 -53.77 -0.26 -17.12 16 19 C -0.24 -6.68 10.43 -15.06 -0.16 -6.84 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 23 Si 0.88 22.25 27.74 -169.99 -4.71 17.53 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.25 16 27 C -0.11 -1.50 1.85 -89.96 -0.17 -1.66 16 28 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 29 C 0.12 1.91 6.60 -3.03 -0.02 1.89 16 30 C 0.12 1.38 10.86 -17.55 -0.19 1.18 16 31 N -0.48 -6.10 10.27 -9.47 -0.10 -6.20 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.10 0.66 7.83 -51.93 -0.41 0.26 16 38 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.08 0.49 7.54 -51.93 -0.39 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.60 7.98 -51.93 -0.41 0.18 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.36 8.16 5.65 -40.82 -0.23 7.93 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -35.30 405.65 -10.43 -45.73 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.61 Total: 6.12 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.15 Total: -5.57 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.16 Total: -60.22 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.30 -10.43 -45.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992923243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.427 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds