Wall clock time and date at job start Wed Apr 1 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38224 * 119.62113 * 2 1 4 4 C 1.38623 * 119.15813 * 180.02562 * 3 2 1 5 5 C 1.38667 * 118.42661 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.42220 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47377 * 90.00154 * 6 5 4 8 8 O 1.21281 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.48655 * 125.78714 * 359.97406 * 9 7 6 11 11 C 1.53060 * 103.44423 * 155.62459 * 10 9 7 12 12 H 1.09005 * 110.55503 * 283.26628 * 11 10 9 13 13 C 1.51623 * 116.67915 * 155.89188 * 11 10 9 14 14 C 1.53818 * 107.01656 * 182.59586 * 13 11 10 15 15 C 1.52523 * 111.70534 * 57.53345 * 14 13 11 16 16 C 1.53842 * 111.66568 * 305.95904 * 15 14 13 17 17 H 1.09000 * 109.93991 * 297.72973 * 16 15 14 18 18 N 1.46493 * 109.94298 * 176.57564 * 16 15 14 19 19 C 1.36945 * 119.99892 * 84.99790 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31614 * 119.99700 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00020 * 23 21 19 27 27 C 1.51445 * 107.03998 * 57.19311 * 16 15 14 28 28 H 1.08996 * 109.87216 * 54.19416 * 27 16 15 29 29 C 1.48239 * 125.77878 * 179.97438 * 9 7 6 30 30 C 1.38183 * 119.16294 * 0.27692 * 5 4 3 31 31 N 1.31862 * 119.61383 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47314 * 89.99246 * 1 2 3 33 33 H 1.08997 * 109.47523 * 210.00386 * 1 2 3 34 34 H 1.09006 * 109.47093 * 329.99926 * 1 2 3 35 35 H 1.07994 * 120.42069 * 0.02562 * 3 2 1 36 36 H 1.08008 * 120.79078 * 180.02562 * 4 3 2 37 37 H 1.08998 * 109.47430 * 329.99824 * 6 5 4 38 38 H 1.09005 * 109.47028 * 210.00667 * 6 5 4 39 39 H 1.08997 * 110.62721 * 37.13443 * 10 9 7 40 40 H 1.08997 * 110.62607 * 274.11066 * 10 9 7 41 41 H 1.08993 * 109.94125 * 63.21899 * 13 11 10 42 42 H 1.08998 * 109.94144 * 301.96852 * 13 11 10 43 43 H 1.08999 * 109.03126 * 296.95810 * 14 13 11 44 44 H 1.08999 * 108.96926 * 178.06492 * 14 13 11 45 45 H 1.08999 * 109.03921 * 185.39577 * 15 14 13 46 46 H 1.09001 * 108.98178 * 66.48544 * 15 14 13 47 47 H 0.97000 * 120.00738 * 264.73255 * 18 16 15 48 48 H 0.97004 * 120.00256 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.17285 * 295.91517 * 29 9 7 50 50 H 1.09002 * 110.17622 * 57.64503 * 29 9 7 51 51 H 1.08001 * 119.62311 * 179.70273 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1904 -0.0005 5 6 4.2266 -0.0344 -0.0016 6 6 5.7322 -0.0990 -0.0017 7 6 6.2341 -0.1219 1.4191 8 8 5.4466 -0.0894 2.3409 9 7 7.5580 -0.1784 1.6653 10 6 8.6320 -0.2235 0.6384 11 6 9.8510 0.3390 1.3735 12 1 9.7819 1.4239 1.4546 13 6 11.2125 -0.0684 0.8450 14 6 12.2632 0.5606 1.7757 15 6 12.0682 0.1232 3.2238 16 6 10.6358 0.3992 3.7125 17 1 10.4341 1.4701 3.6866 18 7 10.4667 -0.1079 5.0764 19 6 10.8340 0.6658 6.1450 20 1 11.2523 1.6480 5.9820 21 6 10.6685 0.1875 7.4376 22 7 11.0220 0.9309 8.4645 23 14 9.9456 -1.5117 7.7193 24 1 11.0394 -2.5156 7.7538 25 1 9.2154 -1.5308 9.0122 26 1 9.0073 -1.8397 6.6160 27 6 9.6980 -0.3276 2.7713 28 1 9.9744 -1.3803 2.7126 29 6 8.1899 -0.2061 3.0060 30 6 3.4766 -1.1949 -0.0079 31 7 2.1586 -1.1464 -0.0005 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6509 2.1372 0.0004 36 1 4.1367 2.1137 -0.0001 37 1 6.1334 0.7750 -0.5147 38 1 6.0570 -1.0033 -0.5164 39 1 8.3743 0.4043 -0.2145 40 1 8.8156 -1.2496 0.3197 41 1 11.3440 0.3051 -0.1705 42 1 11.3066 -1.1542 0.8581 43 1 12.1843 1.6462 1.7185 44 1 13.2566 0.2586 1.4438 45 1 12.7706 0.6655 3.8567 46 1 12.2710 -0.9449 3.3019 47 1 10.0911 -0.9902 5.2228 48 1 10.9060 0.5969 9.3678 49 1 7.9852 0.7233 3.5373 50 1 7.8186 -1.0558 3.5791 51 1 3.9753 -2.1529 -0.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992923243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:38 Heat of formation + Delta-G solvation = -18.444053 kcal Electronic energy + Delta-G solvation = -29911.228613 eV Core-core repulsion = 26002.038090 eV Total energy + Delta-G solvation = -3909.190523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71495 -41.13332 -39.75572 -37.02781 -35.63850 -35.05092 -33.53994 -33.23449 -32.10211 -30.98321 -30.47823 -28.23425 -27.14789 -25.82321 -24.72050 -24.40084 -22.68885 -22.06362 -21.60958 -21.12859 -20.24486 -19.64807 -17.97946 -17.75788 -17.28762 -17.00453 -16.74102 -16.40578 -16.13447 -15.81078 -15.44782 -15.34337 -15.21831 -15.08775 -14.68767 -14.32584 -14.20860 -14.01486 -13.89745 -13.68765 -13.50408 -13.44536 -13.19995 -13.17038 -12.99529 -12.92664 -12.81439 -12.57785 -12.45354 -12.38174 -11.91615 -11.86332 -11.69012 -11.51866 -11.28902 -11.06511 -10.94494 -10.88096 -10.70574 -10.42445 -9.72129 -9.71056 -9.31398 -8.04790 -5.36665 0.10191 0.34730 1.32930 1.36092 1.42436 1.60955 1.90461 2.44684 2.80285 3.23203 3.27771 3.37764 3.56030 3.60636 3.69612 3.81515 3.85037 3.97775 4.03040 4.04399 4.23080 4.26565 4.37911 4.43119 4.46866 4.50976 4.54551 4.60376 4.65717 4.66752 4.68118 4.70527 4.77535 4.77981 4.84968 4.87178 4.94984 5.10753 5.12103 5.17607 5.19656 5.27431 5.30525 5.33964 5.39327 5.43936 5.51929 5.67377 5.76604 5.79320 6.20103 6.52822 7.03076 7.06314 7.13503 7.83618 8.00802 9.17034 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.002633 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.711349 B =10630.647190 C =12309.564617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.102 3.898 3 C -0.176 4.176 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.078 4.078 7 C 0.520 3.480 8 O -0.594 6.594 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.094 4.094 12 H 0.080 0.920 13 C -0.091 4.091 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.194 3.806 17 H 0.038 0.962 18 N -0.752 5.752 19 C -0.221 4.221 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.984 5.984 23 Si 0.949 3.051 24 H -0.275 1.275 25 H -0.300 1.300 26 H -0.259 1.259 27 C -0.103 4.103 28 H 0.087 0.913 29 C 0.124 3.876 30 C 0.098 3.902 31 N -0.516 5.516 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.363 0.637 48 H 0.256 0.744 49 H 0.037 0.963 50 H 0.044 0.956 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -2.156 -30.292 32.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.035 4.035 3 C -0.196 4.196 4 C -0.095 4.095 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.310 3.690 8 O -0.475 6.475 9 N -0.353 5.353 10 C -0.011 4.011 11 C -0.113 4.113 12 H 0.098 0.902 13 C -0.129 4.129 14 C -0.149 4.149 15 C -0.169 4.169 16 C 0.086 3.914 17 H 0.056 0.944 18 N -0.394 5.394 19 C -0.352 4.352 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.777 3.223 24 H -0.201 1.201 25 H -0.227 1.227 26 H -0.184 1.184 27 C -0.123 4.123 28 H 0.106 0.894 29 C 0.001 3.999 30 C -0.059 4.059 31 N -0.226 5.226 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.196 0.804 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.354 -2.732 -29.717 31.929 hybrid contribution 0.269 0.003 1.895 1.914 sum -11.086 -2.728 -27.821 30.073 Atomic orbital electron populations 1.20773 0.87113 1.03937 1.03991 1.21848 0.98512 0.88534 0.94577 1.22248 0.94996 1.00002 1.02310 1.21810 0.94986 0.98434 0.94268 1.20503 0.96362 0.94514 1.02150 1.20610 0.90715 1.08549 0.91848 1.21025 0.80210 0.75285 0.92446 1.90741 1.55849 1.52217 1.48644 1.49279 1.05577 1.72347 1.08081 1.22466 0.84411 1.03471 0.90723 1.22115 0.95757 1.00536 0.92912 0.90158 1.21319 0.90737 1.01432 0.99389 1.21510 0.99973 1.00634 0.92807 1.22101 0.97136 1.00871 0.96776 1.20149 0.93483 0.95840 0.81945 0.94412 1.42832 1.76539 1.17922 1.02149 1.19005 1.32269 0.98280 0.85677 0.92479 1.25428 1.02860 1.01979 0.95300 1.69869 1.56088 1.39299 0.98259 0.85495 0.78690 0.81030 0.77092 1.20071 1.22683 1.18395 1.22135 0.91404 1.01269 0.97453 0.89436 1.21448 0.93490 1.00029 0.84922 1.22853 0.89373 0.98816 0.94810 1.67516 1.10494 1.30621 1.13950 0.88989 0.91375 0.88998 0.82314 0.83058 0.84411 0.84459 0.86435 0.88425 0.88264 0.90501 0.92335 0.90730 0.94798 0.92705 0.80426 0.93490 0.94411 0.93733 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 71.24 0.72 -0.70 16 2 C 0.10 2.14 6.78 42.55 0.29 2.42 16 3 C -0.18 -3.16 9.74 22.36 0.22 -2.94 16 4 C -0.07 -1.27 9.86 22.46 0.22 -1.05 16 5 C -0.13 -2.59 4.39 -19.78 -0.09 -2.68 16 6 C -0.08 -1.07 4.89 29.10 0.14 -0.93 16 7 C 0.52 13.08 7.86 87.66 0.69 13.76 16 8 O -0.59 -22.14 16.38 -3.03 -0.05 -22.19 16 9 N -0.62 -14.26 3.38 -811.42 -2.74 -17.00 16 10 C 0.11 1.36 6.37 85.98 0.55 1.91 16 11 C -0.09 -1.59 2.44 -10.32 -0.03 -1.62 16 12 H 0.08 1.52 8.01 -2.38 -0.02 1.50 16 13 C -0.09 -1.20 5.71 30.42 0.17 -1.03 16 14 C -0.11 -2.19 5.83 30.71 0.18 -2.01 16 15 C -0.13 -3.91 5.45 30.72 0.17 -3.74 16 16 C 0.19 6.87 2.55 44.77 0.11 6.99 16 17 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 18 N -0.75 -34.81 4.91 -324.02 -1.59 -36.40 16 19 C -0.22 -12.68 10.43 84.03 0.88 -11.81 16 20 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 21 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.98 -64.42 13.97 21.65 0.30 -64.11 16 23 Si 0.95 47.28 27.74 68.60 1.90 49.18 16 24 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 26 H -0.26 -11.96 6.52 99.48 0.65 -11.32 16 27 C -0.10 -2.76 1.85 -10.36 -0.02 -2.78 16 28 H 0.09 2.21 7.92 -2.39 -0.02 2.20 16 29 C 0.12 3.91 6.60 86.08 0.57 4.48 16 30 C 0.10 2.20 10.86 84.67 0.92 3.12 16 31 N -0.52 -12.88 10.27 -183.88 -1.89 -14.77 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 0.93 8.08 -2.38 -0.02 0.91 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.14 0.99 7.83 -2.39 -0.02 0.97 16 38 H 0.14 1.03 8.09 -2.38 -0.02 1.01 16 39 H 0.12 0.62 7.54 -2.39 -0.02 0.61 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.93 7.98 -2.39 -0.02 0.91 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.36 16.47 5.65 -92.71 -0.52 15.95 16 48 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 49 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 50 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -85.13 405.65 2.43 -82.70 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.33 Total: 24.61 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 6.17 Total: -2.01 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.92 Total: -132.29 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.90 Total: 49.18 kcal Total: -85.13 2.43 -82.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992923243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.256 kcal (2) G-P(sol) polarization free energy of solvation -85.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds