Wall clock time and date at job start Wed Apr 1 2020 02:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38627 * 120.32563 * 2 1 4 4 C 1.38594 * 118.48802 * 179.97438 * 3 2 1 5 5 C 1.39312 * 119.05842 * 359.97438 * 4 3 2 6 6 C 1.48165 * 119.72395 * 179.97438 * 5 4 3 7 7 O 1.21522 * 119.99648 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99975 * 179.72682 * 8 6 5 10 10 C 1.53004 * 115.55095 * 180.02562 * 9 8 6 11 11 C 1.53039 * 109.46114 * 85.60358 * 10 9 8 12 12 C 1.53191 * 109.31385 * 178.60265 * 11 10 9 13 13 N 1.46926 * 108.76390 * 54.65650 * 12 11 10 14 14 C 1.36935 * 120.63033 * 126.36234 * 13 12 11 15 15 H 1.07998 * 120.00377 * 207.70142 * 14 13 12 16 16 C 1.38818 * 119.99908 * 27.69993 * 14 13 12 17 17 N 1.31618 * 119.99836 * 17.35396 * 16 14 13 18 18 Si 1.86797 * 119.99794 * 197.35085 * 16 14 13 19 19 H 1.48503 * 109.46868 * 90.00152 * 18 16 14 20 20 H 1.48502 * 109.46942 * 210.00055 * 18 16 14 21 21 H 1.48500 * 109.47577 * 330.00044 * 18 16 14 22 22 C 1.46926 * 118.73915 * 306.38594 * 13 12 11 23 23 C 1.53042 * 109.45695 * 325.55238 * 10 9 8 24 24 C 1.52994 * 117.50362 * 34.32601 * 9 8 6 25 25 C 1.52998 * 117.49947 * 325.66613 * 9 8 6 26 26 N 1.32715 * 120.55585 * 0.25666 * 5 4 3 27 27 C 1.31532 * 121.63851 * 359.47274 * 26 5 4 28 28 C 1.50699 * 119.54338 * 180.26820 * 27 26 5 29 29 H 1.09007 * 109.47123 * 89.99855 * 1 2 3 30 30 H 1.08994 * 109.47541 * 210.00038 * 1 2 3 31 31 H 1.09004 * 109.47252 * 330.00769 * 1 2 3 32 32 H 1.07995 * 120.75916 * 359.95236 * 3 2 1 33 33 H 1.08000 * 120.47135 * 180.02562 * 4 3 2 34 34 H 0.96991 * 119.99733 * 359.97438 * 8 6 5 35 35 H 1.08994 * 109.45938 * 205.58332 * 10 9 8 36 36 H 1.09000 * 109.49940 * 298.57390 * 11 10 9 37 37 H 1.09003 * 109.49551 * 58.66588 * 11 10 9 38 38 H 1.09000 * 109.59548 * 294.87181 * 12 11 10 39 39 H 1.08997 * 109.58876 * 174.43859 * 12 11 10 40 40 H 0.96996 * 119.99552 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.58645 * 293.81798 * 22 13 12 42 42 H 1.09006 * 109.58737 * 173.39258 * 22 13 12 43 43 H 1.08998 * 109.49653 * 301.33935 * 23 10 9 44 44 H 1.08998 * 109.49610 * 61.40099 * 23 10 9 45 45 H 1.09007 * 117.49825 * 0.02562 * 24 9 8 46 46 H 1.08999 * 117.50583 * 145.01714 * 24 9 8 47 47 H 1.09004 * 117.50124 * 214.98480 * 25 9 8 48 48 H 1.09005 * 117.50087 * 359.97438 * 25 9 8 49 49 H 1.09005 * 109.47348 * 270.25324 * 28 27 26 50 50 H 1.09004 * 109.47322 * 30.25910 * 28 27 26 51 51 H 1.09004 * 109.46880 * 150.25895 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0005 5 6 4.2293 -0.0867 0.0016 6 6 5.7096 -0.1514 0.0016 7 8 6.3625 0.8735 0.0002 8 7 6.3319 -1.3469 0.0021 9 6 7.7955 -1.4108 -0.0039 10 6 8.3945 -2.8187 -0.0033 11 6 8.4863 -3.3343 -1.4413 12 6 9.1186 -4.7296 -1.4399 13 7 8.3494 -5.5961 -0.5364 14 6 7.8522 -6.7944 -0.9743 15 1 6.9631 -7.2081 -0.5218 16 6 8.4910 -7.4777 -2.0001 17 7 9.7310 -7.1744 -2.3205 18 14 7.5905 -8.8274 -2.9257 19 1 6.8830 -8.2406 -4.0920 20 1 8.5681 -9.8406 -3.3981 21 1 6.6048 -9.4741 -2.0228 22 6 8.1234 -5.1521 0.8459 23 6 7.5026 -3.7519 0.8187 24 6 8.5534 -0.3200 0.7553 25 6 8.5469 -0.3240 -0.7754 26 7 3.5217 -1.2094 -0.0030 27 6 2.2064 -1.1960 0.0016 28 6 1.4501 -2.4995 0.0021 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5137 32 1 1.6847 2.1419 -0.0008 33 1 4.1693 2.0649 0.0010 34 1 5.8107 -2.1649 0.0029 35 1 9.3915 -2.7889 0.4362 36 1 7.4870 -3.3879 -1.8731 37 1 9.1025 -2.6565 -2.0322 38 1 10.1497 -4.6634 -1.0927 39 1 9.0963 -5.1420 -2.4486 40 1 10.1771 -7.6515 -3.0375 41 1 9.0733 -5.1204 1.3794 42 1 7.4444 -5.8432 1.3453 43 1 7.4185 -3.3714 1.8367 44 1 6.5125 -3.8011 0.3658 45 1 7.9631 0.4451 1.2597 46 1 9.4790 -0.6051 1.2554 47 1 9.4682 -0.6119 -1.2818 48 1 7.9523 0.4383 -1.2788 49 1 1.2680 -2.8144 -1.0254 50 1 2.0372 -3.2601 0.5167 51 1 0.4977 -2.3666 0.5155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000208737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:00 Heat of formation + Delta-G solvation = 43.264895 kcal Electronic energy + Delta-G solvation = -30549.082828 eV Core-core repulsion = 26642.568206 eV Total energy + Delta-G solvation = -3906.514622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.05790 -39.97405 -37.91138 -35.96165 -34.36835 -33.33939 -32.73097 -32.65006 -30.30216 -29.68970 -28.69326 -27.67551 -25.54153 -23.74451 -22.90368 -22.59312 -22.30657 -21.58109 -20.77960 -19.75774 -18.78451 -18.27242 -16.91923 -16.66141 -15.72247 -15.44358 -15.31755 -15.08801 -14.77544 -14.55587 -14.10756 -13.80644 -13.65048 -13.51814 -13.47464 -13.33048 -13.26277 -13.05876 -12.87482 -12.75062 -12.53613 -12.35833 -12.25920 -11.78204 -11.43929 -11.26190 -11.04131 -10.94756 -10.70787 -10.65106 -10.32669 -10.25171 -10.13981 -10.05970 -9.99828 -9.88967 -9.61233 -9.49215 -9.29341 -9.08523 -8.46309 -8.34597 -6.63994 -5.75647 -3.17479 0.40872 0.93625 2.58420 3.04832 3.39659 3.46504 3.47502 3.61023 3.83932 4.19142 4.32413 4.44901 4.50210 4.52290 4.61260 4.88695 4.92287 5.08515 5.11961 5.22481 5.27277 5.29979 5.31457 5.38986 5.39458 5.47089 5.55217 5.64714 5.76192 5.77014 5.80041 5.82169 5.90692 5.96303 6.04046 6.17028 6.21621 6.33761 6.37001 6.51102 6.53954 6.61080 6.71070 6.77876 6.80434 6.87260 6.99799 7.42082 7.43744 7.69918 7.72016 7.82756 8.21182 8.48464 9.24820 9.88580 10.45333 11.32769 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003166 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.065817 B = 8842.527427 C =10828.106700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.115 4.115 5 C 0.080 3.920 6 C 0.568 3.432 7 O -0.535 6.535 8 N -0.666 5.666 9 C 0.105 3.895 10 C -0.041 4.041 11 C -0.133 4.133 12 C 0.171 3.829 13 N -0.592 5.592 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.147 3.853 23 C -0.127 4.127 24 C -0.179 4.179 25 C -0.175 4.175 26 N -0.453 5.453 27 C 0.128 3.872 28 C -0.110 4.110 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 16.688 5.612 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.136 4.136 5 C -0.058 4.058 6 C 0.353 3.647 7 O -0.412 6.412 8 N -0.315 5.315 9 C 0.018 3.982 10 C -0.060 4.060 11 C -0.172 4.172 12 C 0.045 3.955 13 N -0.315 5.315 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.020 3.980 23 C -0.167 4.167 24 C -0.217 4.217 25 C -0.214 4.214 26 N -0.165 5.165 27 C -0.012 4.012 28 C -0.167 4.167 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.122 0.878 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.889 16.476 5.490 22.875 hybrid contribution -1.062 -0.124 -0.588 1.220 sum -15.951 16.351 4.902 23.363 Atomic orbital electron populations 1.20869 0.89887 1.03507 1.02985 1.20953 0.97792 0.93571 0.99764 1.21487 0.93604 0.98364 0.97380 1.22074 0.94864 0.98964 0.97729 1.21165 0.94198 0.89621 1.00822 1.17892 0.85720 0.84004 0.77063 1.90730 1.65304 1.34521 1.50667 1.45296 1.06137 1.08696 1.71389 1.21027 0.78387 0.93140 1.05641 1.20779 0.98558 0.88445 0.98217 1.22248 1.01341 0.99720 0.93870 1.20791 0.91824 0.85830 0.97079 1.44062 1.63282 1.18823 1.05306 1.19198 1.05299 0.96719 1.16787 0.91704 1.25026 0.95010 0.98049 1.01634 1.70036 1.09671 1.43551 1.31492 0.86306 0.78907 0.81451 0.80210 1.21506 1.21832 1.20458 1.20878 0.96968 0.92240 0.87913 1.22036 0.98921 0.97619 0.98087 1.23442 1.01531 1.01575 0.95190 1.23349 1.01905 1.01383 0.94714 1.67419 1.08180 1.30387 1.10514 1.21191 0.89090 0.95379 0.95588 1.20838 0.99266 0.92944 1.03612 0.90435 0.90425 0.91143 0.84159 0.83474 0.74387 0.90265 0.92736 0.93075 0.96469 0.89424 0.93690 0.96442 0.92778 0.92925 0.92459 0.87778 0.88950 0.88697 0.87758 0.89965 0.89924 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.62 36.00 0.35 -0.24 16 2 C -0.12 -1.01 5.91 -104.36 -0.62 -1.63 16 3 C -0.08 -0.71 9.85 -39.31 -0.39 -1.09 16 4 C -0.12 -1.27 9.63 -39.05 -0.38 -1.65 16 5 C 0.08 1.08 6.75 -83.01 -0.56 0.52 16 6 C 0.57 8.63 7.52 -12.18 -0.09 8.54 16 7 O -0.53 -8.82 11.80 5.35 0.06 -8.75 16 8 N -0.67 -10.16 5.37 -48.44 -0.26 -10.42 16 9 C 0.11 1.63 2.48 -131.82 -0.33 1.31 16 10 C -0.04 -0.69 2.28 -90.58 -0.21 -0.90 16 11 C -0.13 -2.55 5.22 -26.61 -0.14 -2.69 16 12 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 13 N -0.59 -14.70 2.99 -172.32 -0.52 -15.22 16 14 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 15 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 16 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 17 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 18 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 23 C -0.13 -2.19 4.83 -26.61 -0.13 -2.32 16 24 C -0.18 -2.63 9.37 -26.70 -0.25 -2.88 16 25 C -0.18 -2.66 8.91 -26.70 -0.24 -2.90 16 26 N -0.45 -5.95 9.45 -6.06 -0.06 -6.01 16 27 C 0.13 1.35 6.78 -82.60 -0.56 0.79 16 28 C -0.11 -0.87 9.77 36.01 0.35 -0.52 16 29 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.08 0.33 5.95 -51.93 -0.31 0.02 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 1.51 7.64 -52.49 -0.40 1.11 16 34 H 0.42 6.39 5.99 -40.82 -0.24 6.15 16 35 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.91 7.25 -51.93 -0.38 0.53 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.00 6.50 -51.93 -0.34 0.67 16 45 H 0.10 1.63 6.37 -51.93 -0.33 1.29 16 46 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 47 H 0.09 1.36 7.60 -51.93 -0.39 0.97 16 48 H 0.10 1.69 6.38 -51.93 -0.33 1.36 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.43 5.93 -51.93 -0.31 0.13 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -31.38 395.81 -10.61 -41.98 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.94 Total: 7.04 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -3.46 Total: -5.65 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.21 Total: -57.28 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.06 Total: -8.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.38 -10.61 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000208737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.249 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds