Wall clock time and date at job start Wed Apr 1 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38600 * 120.32818 * 2 1 4 4 N 1.31492 * 120.90415 * 180.02562 * 3 2 1 5 5 C 1.32741 * 121.64081 * 359.97438 * 4 3 2 6 6 C 1.48174 * 119.72147 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00113 * 174.73248 * 6 5 4 8 8 N 1.34785 * 119.99584 * 355.00898 * 6 5 4 9 9 C 1.46501 * 119.99361 * 179.72222 * 8 6 5 10 10 C 1.52999 * 115.54402 * 180.02562 * 9 8 6 11 11 C 1.53039 * 109.46091 * 85.65550 * 10 9 8 12 12 C 1.53194 * 109.31338 * 178.61286 * 11 10 9 13 13 N 1.46926 * 108.77625 * 54.63353 * 12 11 10 14 14 C 1.36932 * 120.63219 * 126.37106 * 13 12 11 15 15 H 1.08008 * 119.99917 * 214.27705 * 14 13 12 16 16 C 1.38812 * 120.00271 * 34.27780 * 14 13 12 17 17 N 1.31614 * 119.99649 * 6.22258 * 16 14 13 18 18 Si 1.86803 * 120.00286 * 186.22258 * 16 14 13 19 19 H 1.48498 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46993 * 119.99910 * 18 16 14 21 21 H 1.48496 * 109.46997 * 239.99952 * 18 16 14 22 22 C 1.46928 * 118.73754 * 306.38918 * 13 12 11 23 23 C 1.53043 * 109.46471 * 325.58383 * 10 9 8 24 24 C 1.53003 * 117.50006 * 34.33569 * 9 8 6 25 25 C 1.52996 * 117.50309 * 325.67051 * 9 8 6 26 26 C 1.39267 * 120.55798 * 0.25441 * 5 4 3 27 27 C 1.50703 * 120.46784 * 179.74884 * 26 5 4 28 28 C 1.38589 * 120.32325 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46916 * 90.00174 * 1 2 3 30 30 H 1.09004 * 109.47207 * 210.00071 * 1 2 3 31 31 H 1.08999 * 109.46879 * 329.99932 * 1 2 3 32 32 H 1.08005 * 119.54346 * 359.97438 * 3 2 1 33 33 H 0.96994 * 119.99860 * 359.72279 * 8 6 5 34 34 H 1.09006 * 109.45960 * 205.61270 * 10 9 8 35 35 H 1.09006 * 109.49616 * 298.56149 * 11 10 9 36 36 H 1.08996 * 109.49714 * 58.66273 * 11 10 9 37 37 H 1.08997 * 109.58571 * 294.84516 * 12 11 10 38 38 H 1.09000 * 109.59004 * 174.41714 * 12 11 10 39 39 H 0.97006 * 120.00128 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.59205 * 293.82076 * 22 13 12 41 41 H 1.09001 * 109.58791 * 173.39743 * 22 13 12 42 42 H 1.09000 * 109.49560 * 301.34304 * 23 10 9 43 43 H 1.09001 * 109.49835 * 61.39758 * 23 10 9 44 44 H 1.08992 * 117.49884 * 359.97438 * 24 9 8 45 45 H 1.09002 * 117.49570 * 145.01869 * 24 9 8 46 46 H 1.08998 * 117.49930 * 214.98417 * 25 9 8 47 47 H 1.09002 * 117.49732 * 359.97438 * 25 9 8 48 48 H 1.08993 * 109.47235 * 82.78707 * 27 26 5 49 49 H 1.09001 * 109.46704 * 202.78679 * 27 26 5 50 50 H 1.08997 * 109.47172 * 322.78305 * 27 26 5 51 51 H 1.07998 * 120.75450 * 359.95982 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1963 0.0000 4 7 3.5217 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7098 0.1510 -0.0017 7 8 6.3624 -0.8693 0.0949 8 7 6.3323 1.3421 -0.1043 9 6 7.7958 1.4064 -0.0993 10 6 8.3950 2.8089 -0.2204 11 6 8.4836 3.4472 1.1677 12 6 9.1158 4.8373 1.0467 13 7 8.3491 5.6221 0.0695 14 6 7.8510 6.8539 0.4006 15 1 6.9069 7.1824 -0.0085 16 6 8.5593 7.6805 1.2620 17 7 9.7641 7.3346 1.6635 18 14 7.8028 9.2836 1.8512 19 1 6.4496 9.4392 1.2596 20 1 7.6959 9.2655 3.3323 21 1 8.6611 10.4200 1.4306 22 6 8.1266 5.0599 -1.2696 23 6 7.5055 3.6673 -1.1226 24 6 8.5559 0.2537 -0.7586 25 6 8.5447 0.3909 0.7660 26 6 3.5923 -1.1519 -0.0053 27 6 4.3977 -2.4256 -0.0110 28 6 2.2067 -1.1963 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6648 2.1305 -0.0004 33 1 5.8112 2.1566 -0.1814 34 1 9.3933 2.7412 -0.6531 35 1 7.4832 3.5381 1.5908 36 1 9.0983 2.8232 1.8164 37 1 10.1478 4.7413 0.7093 38 1 9.0909 5.3357 2.0158 39 1 10.2593 7.9124 2.2652 40 1 9.0779 4.9821 -1.7959 41 1 7.4490 5.7051 -1.8288 42 1 7.4239 3.2000 -2.1040 43 1 6.5141 3.7556 -0.6783 44 1 7.9670 -0.5526 -1.1956 45 1 9.4831 0.4945 -1.2786 46 1 9.4645 0.7218 1.2483 47 1 7.9484 -0.3249 1.3320 48 1 4.7015 -2.6680 1.0073 49 1 3.7909 -3.2374 -0.4121 50 1 5.2833 -2.2927 -0.6325 51 1 1.6844 -2.1416 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000219137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:45 Heat of formation + Delta-G solvation = 26.503579 kcal Electronic energy + Delta-G solvation = -30618.821898 eV Core-core repulsion = 26711.580451 eV Total energy + Delta-G solvation = -3907.241447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07211 -40.90469 -39.29364 -37.46041 -35.08675 -34.66059 -34.31883 -33.66002 -32.06895 -31.43583 -28.74933 -28.35214 -27.37079 -24.96199 -24.41906 -24.06358 -23.15127 -22.84014 -21.79489 -21.25363 -20.18519 -19.33224 -18.68352 -17.82387 -16.98842 -16.62080 -16.50566 -16.31008 -15.67612 -15.48575 -15.27479 -15.07799 -14.95660 -14.91406 -14.68643 -14.50921 -14.34497 -14.08190 -13.95441 -13.91150 -13.41148 -13.33726 -13.21017 -13.09740 -12.88349 -12.68574 -12.65921 -12.62904 -12.26002 -12.12679 -11.94189 -11.88676 -11.75145 -11.54332 -11.14157 -10.98022 -10.85346 -10.60053 -10.55017 -10.31703 -9.91538 -9.49878 -8.55644 -7.84923 -5.39297 -0.39058 0.20885 1.46222 1.47319 1.57964 1.63495 2.00678 2.51039 2.73798 3.00891 3.10648 3.30357 3.58606 3.63548 3.73520 3.75183 3.81759 3.92728 3.95054 4.02575 4.16039 4.24359 4.35762 4.47495 4.50002 4.57284 4.62229 4.66416 4.75478 4.79049 4.82349 4.84794 4.86218 4.93923 5.01614 5.04996 5.11544 5.16509 5.17545 5.24004 5.25188 5.25943 5.34835 5.35697 5.38945 5.53790 5.62768 5.67623 5.68950 5.80744 6.41601 6.45657 6.78468 7.13720 7.19153 7.87899 8.42118 9.20474 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.002959 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.220478 B = 9461.340429 C =11192.217038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C 0.076 3.924 4 N -0.475 5.475 5 C 0.033 3.967 6 C 0.564 3.436 7 O -0.541 6.541 8 N -0.671 5.671 9 C 0.101 3.899 10 C -0.031 4.031 11 C -0.117 4.117 12 C 0.180 3.820 13 N -0.610 5.610 14 C -0.262 4.262 15 H 0.063 0.937 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.143 3.857 23 C -0.113 4.113 24 C -0.165 4.165 25 C -0.174 4.174 26 C -0.076 4.076 27 C -0.110 4.110 28 C -0.091 4.091 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.414 0.586 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.064 0.936 37 H -0.002 1.002 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.017 0.983 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 -20.352 -4.956 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.085 4.085 4 N -0.186 5.186 5 C -0.104 4.104 6 C 0.351 3.649 7 O -0.420 6.420 8 N -0.320 5.320 9 C 0.014 3.986 10 C -0.050 4.050 11 C -0.156 4.156 12 C 0.055 3.945 13 N -0.334 5.334 14 C -0.393 4.393 15 H 0.081 0.919 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.018 3.982 23 C -0.152 4.152 24 C -0.203 4.203 25 C -0.213 4.213 26 C -0.079 4.079 27 C -0.166 4.166 28 C -0.116 4.116 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.016 0.984 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.202 -20.152 -4.802 26.299 hybrid contribution -0.461 0.902 0.582 1.168 sum -16.662 -19.250 -4.220 25.807 Atomic orbital electron populations 1.20883 0.87034 1.04777 1.04094 1.21568 0.99687 0.93200 0.95732 1.23186 0.88620 0.99611 0.97069 1.67479 1.10303 1.30461 1.10318 1.20922 0.93484 0.90390 1.05570 1.18181 0.86663 0.83470 0.76571 1.90662 1.66138 1.34256 1.50977 1.45313 1.05817 1.09342 1.71575 1.20827 0.78865 0.92268 1.06645 1.20610 0.98873 0.89342 0.96178 1.22024 1.00253 0.97077 0.96260 1.20560 0.91316 0.88855 0.93802 1.44235 1.63472 1.16961 1.08724 1.19509 1.00957 0.92669 1.26125 0.91919 1.25998 0.95632 1.00846 1.01862 1.70127 1.12140 1.38632 1.37239 0.85197 0.78145 0.79704 0.77372 1.18981 1.21780 1.21754 1.21033 0.97121 0.93390 0.86688 1.21866 0.98320 0.95828 0.99223 1.23438 1.01613 0.99661 0.95561 1.23319 1.01888 1.01587 0.94463 1.21139 0.95563 0.95735 0.95475 1.20972 0.99902 0.92389 1.03375 1.21814 0.91976 1.00142 0.97714 0.89110 0.89527 0.89806 0.80221 0.74784 0.89882 0.93935 0.91749 0.98382 0.93051 0.94136 0.96534 0.92742 0.90505 0.92849 0.88338 0.87468 0.88069 0.88744 0.90953 0.89639 0.90238 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 71.24 0.71 0.03 16 2 C -0.10 -1.38 5.91 -19.69 -0.12 -1.50 16 3 C 0.08 1.43 10.86 84.83 0.92 2.35 16 4 N -0.48 -12.24 9.55 -184.91 -1.77 -14.01 16 5 C 0.03 0.87 6.75 41.90 0.28 1.15 16 6 C 0.56 16.74 7.46 86.88 0.65 17.39 16 7 O -0.54 -16.68 8.79 -3.74 -0.03 -16.71 16 8 N -0.67 -20.15 5.38 -425.45 -2.29 -22.44 16 9 C 0.10 3.02 2.48 3.60 0.01 3.03 16 10 C -0.03 -1.02 2.28 -10.77 -0.02 -1.05 16 11 C -0.12 -4.55 5.22 30.67 0.16 -4.39 16 12 C 0.18 8.87 5.23 86.36 0.45 9.32 16 13 N -0.61 -31.04 2.98 -699.10 -2.08 -33.12 16 14 C -0.26 -14.61 9.56 84.03 0.80 -13.81 16 15 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 16 C -0.05 -2.71 5.13 84.86 0.44 -2.28 16 17 N -0.94 -55.96 11.02 21.65 0.24 -55.72 16 18 Si 0.97 45.36 29.56 68.60 2.03 47.39 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 C 0.14 5.96 6.52 86.36 0.56 6.53 16 23 C -0.11 -3.83 4.83 30.67 0.15 -3.68 16 24 C -0.16 -4.50 9.37 30.62 0.29 -4.21 16 25 C -0.17 -5.05 8.91 30.62 0.27 -4.78 16 26 C -0.08 -1.60 5.93 -19.52 -0.12 -1.71 16 27 C -0.11 -2.07 8.72 71.24 0.62 -1.45 16 28 C -0.09 -1.34 9.51 22.45 0.21 -1.12 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.32 8.09 -2.39 -0.02 0.30 16 31 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 32 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.41 12.72 6.00 -92.71 -0.56 12.17 16 34 H 0.08 2.71 7.90 -2.38 -0.02 2.69 16 35 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 2.30 7.24 -2.39 -0.02 2.28 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.05 2.89 6.19 -2.39 -0.01 2.87 16 39 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 1.86 6.50 -2.39 -0.02 1.84 16 44 H 0.10 2.85 6.37 -2.39 -0.02 2.84 16 45 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 46 H 0.10 2.76 7.60 -2.39 -0.02 2.75 16 47 H 0.09 2.97 6.38 -2.39 -0.02 2.96 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.08 8.05 -2.39 -0.02 1.06 16 50 H 0.08 1.86 5.88 -2.39 -0.01 1.84 16 51 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -68.54 394.67 2.75 -65.79 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.38 Total: 28.99 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.27 Total: -0.17 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.90 Total: -125.29 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.03 Total: -16.71 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.54 2.75 -65.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.293 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds