Wall clock time and date at job start Wed Apr 1 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38349 * 119.45699 * 2 1 4 4 C 1.38356 * 119.30050 * 179.97438 * 3 2 1 5 5 C 1.40032 * 118.28842 * 0.02562 * 4 3 2 6 6 C 1.47839 * 120.55834 * 179.97438 * 5 4 3 7 7 O 1.21547 * 120.00094 * 217.29996 * 6 5 4 8 8 N 1.34780 * 119.99653 * 37.30468 * 6 5 4 9 9 C 1.46926 * 120.62740 * 184.86759 * 8 6 5 10 10 C 1.53185 * 108.77774 * 233.62819 * 9 8 6 11 11 C 1.53045 * 109.31371 * 305.36747 * 10 9 8 12 12 C 1.53001 * 109.46100 * 181.38467 * 11 10 9 13 13 H 1.09000 * 109.99412 * 181.92138 * 12 11 10 14 14 C 1.54313 * 109.77413 * 303.07467 * 12 11 10 15 15 C 1.55156 * 102.86093 * 141.88613 * 14 12 11 16 16 C 1.54902 * 101.58629 * 324.30300 * 15 14 12 17 17 N 1.47018 * 109.88179 * 60.82794 * 12 11 10 18 18 C 1.36935 * 125.65295 * 61.68034 * 17 12 11 19 19 H 1.07996 * 119.99825 * 14.27539 * 18 17 12 20 20 C 1.38814 * 119.99936 * 194.55570 * 18 17 12 21 21 N 1.31619 * 120.00256 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47086 * 89.99750 * 22 20 18 24 24 H 1.48495 * 109.47222 * 209.99731 * 22 20 18 25 25 H 1.48502 * 109.47022 * 330.00255 * 22 20 18 26 26 C 1.53038 * 109.53861 * 61.35934 * 11 10 9 27 27 C 1.46926 * 120.63353 * 4.88678 * 8 6 5 28 28 C 1.39519 * 118.88047 * 0.26762 * 5 4 3 29 29 N 1.31692 * 120.56780 * 359.45847 * 28 5 4 30 30 H 1.09002 * 109.47282 * 90.00066 * 1 2 3 31 31 H 1.09005 * 109.47088 * 210.00004 * 1 2 3 32 32 H 1.09004 * 109.47448 * 329.99942 * 1 2 3 33 33 H 1.08000 * 120.35565 * 359.97438 * 3 2 1 34 34 H 1.07993 * 120.85904 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.59181 * 113.83810 * 9 8 6 36 36 H 1.09004 * 109.58816 * 353.41448 * 9 8 6 37 37 H 1.09000 * 109.50071 * 185.41188 * 10 9 8 38 38 H 1.08999 * 109.52451 * 65.33019 * 10 9 8 39 39 H 1.08999 * 109.45527 * 301.35725 * 11 10 9 40 40 H 1.09004 * 110.92524 * 23.47507 * 14 12 11 41 41 H 1.08994 * 110.59091 * 260.14858 * 14 12 11 42 42 H 1.09003 * 111.00492 * 206.22618 * 15 14 12 43 43 H 1.08999 * 111.03506 * 82.39858 * 15 14 12 44 44 H 1.09002 * 110.36861 * 278.17509 * 16 15 14 45 45 H 1.08993 * 110.46206 * 155.89110 * 16 15 14 46 46 H 0.97000 * 119.99834 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.49715 * 58.59008 * 26 11 10 48 48 H 1.08994 * 109.49524 * 178.68604 * 26 11 10 49 49 H 1.08996 * 109.58355 * 246.15681 * 27 8 6 50 50 H 1.08997 * 109.58379 * 6.58646 * 27 8 6 51 51 H 1.07998 * 119.71462 * 179.72654 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7082 -0.0966 0.0005 7 8 6.2800 -0.9589 -0.6374 8 7 6.4208 0.8025 0.7080 9 6 7.8881 0.8201 0.6338 10 6 8.4546 0.7391 2.0547 11 6 7.8546 1.8623 2.9037 12 6 8.4444 1.8057 4.3143 13 1 7.9975 2.5812 4.9365 14 6 8.1832 0.4167 4.9340 15 6 9.4933 0.1359 5.7165 16 6 10.5536 0.7809 4.7897 17 7 9.9017 1.9903 4.2548 18 6 10.5467 3.1035 3.7859 19 1 9.9987 4.0218 3.6354 20 6 11.9037 3.0499 3.4984 21 7 12.5705 1.9293 3.6770 22 14 12.7834 4.5683 2.8580 23 1 13.3100 5.3548 4.0023 24 1 13.9088 4.1556 1.9814 25 1 11.8307 5.4017 2.0813 26 6 6.3357 1.6916 2.9788 27 6 5.7451 1.7833 1.5682 28 6 3.4716 -1.2043 -0.0058 29 7 2.1558 -1.1487 -0.0008 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6443 2.1382 -0.0004 34 1 4.1274 2.1264 0.0010 35 1 8.2191 1.7446 0.1606 36 1 8.2349 -0.0346 0.0529 37 1 9.5386 0.8479 2.0210 38 1 8.1993 -0.2251 2.4943 39 1 8.0896 2.8252 2.4502 40 1 8.0293 -0.3331 4.1579 41 1 7.3299 0.4533 5.6110 42 1 9.6646 -0.9357 5.8197 43 1 9.4786 0.6227 6.6916 44 1 10.8135 0.1001 3.9790 45 1 11.4437 1.0499 5.3584 46 1 13.5187 1.8918 3.4758 47 1 6.0998 0.7183 3.4093 48 1 5.9116 2.4783 3.6026 49 1 5.9013 2.7864 1.1713 50 1 4.6780 1.5642 1.6039 51 1 3.9669 -2.1640 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004347048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:48 Heat of formation + Delta-G solvation = 27.531850 kcal Electronic energy + Delta-G solvation = -30921.310764 eV Core-core repulsion = 27014.113906 eV Total energy + Delta-G solvation = -3907.196858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07776 -39.65926 -38.34287 -36.42493 -33.83442 -32.94468 -32.67103 -32.05112 -30.80052 -29.38101 -28.50191 -27.48631 -24.84045 -24.28672 -24.10518 -22.87047 -22.67667 -21.28351 -20.23496 -19.69381 -18.42010 -17.41780 -16.81046 -16.75517 -16.42610 -15.80260 -15.21811 -15.10668 -14.76327 -14.62294 -14.57193 -13.99563 -13.93149 -13.75811 -13.58621 -13.28816 -13.08260 -12.73765 -12.65234 -12.54506 -12.33964 -12.14372 -12.03245 -11.86614 -11.50264 -11.25860 -11.00445 -10.92362 -10.81264 -10.42216 -10.28985 -10.24472 -10.12055 -10.01151 -9.86596 -9.72848 -9.65374 -9.49953 -9.44675 -9.25233 -8.60380 -8.52519 -6.76028 -5.74569 -3.09364 0.44872 0.88067 2.63514 2.94161 3.37324 3.43000 3.44886 3.48352 3.91452 4.30578 4.33507 4.47498 4.49587 4.67469 4.85931 4.95362 5.05403 5.15943 5.19770 5.20699 5.34251 5.36133 5.43053 5.45862 5.50535 5.58551 5.66485 5.68340 5.72399 5.74702 5.78500 5.85467 5.91108 5.97292 6.12199 6.18853 6.26915 6.27837 6.36605 6.46835 6.53418 6.57939 6.63804 6.77010 6.97407 7.03768 7.14714 7.37399 7.55692 7.61131 7.64154 7.81169 8.08566 8.29430 9.20706 9.82318 10.52208 11.37503 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.002698 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.267438 B =10375.981171 C =10744.383002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.143 3.857 3 C -0.180 4.180 4 C -0.043 4.043 5 C -0.184 4.184 6 C 0.561 3.439 7 O -0.537 6.537 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.118 4.118 11 C -0.092 4.092 12 C 0.167 3.833 13 H 0.030 0.970 14 C -0.129 4.129 15 C -0.150 4.150 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.224 4.224 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.130 4.130 27 C 0.096 3.904 28 C 0.159 3.841 29 N -0.488 5.488 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.252 0.748 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 -1.369 -4.340 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.200 4.200 4 C -0.069 4.069 5 C -0.189 4.189 6 C 0.348 3.652 7 O -0.415 6.415 8 N -0.330 5.330 9 C -0.010 4.010 10 C -0.155 4.155 11 C -0.113 4.113 12 C 0.060 3.940 13 H 0.048 0.952 14 C -0.167 4.167 15 C -0.189 4.189 16 C 0.049 3.951 17 N -0.316 5.316 18 C -0.353 4.353 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.168 4.168 27 C -0.027 4.027 28 C 0.001 3.999 29 N -0.197 5.197 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.544 -2.527 -4.735 22.203 hybrid contribution 1.107 1.748 -0.333 2.095 sum -20.437 -0.779 -5.068 21.071 Atomic orbital electron populations 1.20782 0.88511 1.03796 1.03358 1.21551 0.97346 0.88393 0.92143 1.21925 0.94436 0.99585 1.04047 1.21956 0.94622 0.97725 0.92575 1.20993 0.94875 0.95555 1.07488 1.18084 0.86137 0.81297 0.79636 1.90785 1.71502 1.35432 1.43825 1.48089 1.07830 1.32951 1.44082 1.21808 0.77154 1.02779 0.99266 1.21890 1.02632 0.98487 0.92528 1.21577 0.91728 0.99028 0.98966 1.20913 0.86711 0.94029 0.92378 0.95205 1.22679 0.97246 0.97810 0.98932 1.23010 0.97331 0.99412 0.99163 1.21395 0.93135 0.87081 0.93460 1.44478 0.98640 1.15757 1.72755 1.18905 0.91683 0.88443 1.36280 0.91009 1.24863 0.97143 0.96898 1.01147 1.69933 1.08140 1.24623 1.53586 0.86224 0.79422 0.82219 0.78510 1.21717 1.21732 1.20741 1.22007 0.97622 1.02299 0.94910 1.22201 0.97007 0.92047 0.91399 1.22907 0.88584 0.97883 0.90506 1.67630 1.09487 1.29021 1.13578 0.90063 0.90181 0.90409 0.84106 0.83681 0.91365 0.89343 0.88530 0.92283 0.91179 0.91450 0.92898 0.92675 0.92619 0.95727 0.91459 0.93745 0.91693 0.91059 0.91130 0.89691 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.01 0.37 -0.25 16 2 C 0.14 1.29 6.78 -82.51 -0.56 0.73 16 3 C -0.18 -1.40 9.72 -39.50 -0.38 -1.79 16 4 C -0.04 -0.39 7.48 -38.87 -0.29 -0.68 16 5 C -0.18 -2.18 5.25 -104.82 -0.55 -2.73 16 6 C 0.56 8.15 7.39 -12.33 -0.09 8.06 16 7 O -0.54 -9.63 16.30 5.32 0.09 -9.54 16 8 N -0.60 -8.15 2.97 -173.89 -0.52 -8.66 16 9 C 0.11 1.72 6.44 -3.71 -0.02 1.70 16 10 C -0.12 -2.03 4.91 -26.61 -0.13 -2.16 16 11 C -0.09 -1.52 1.93 -90.58 -0.17 -1.69 16 12 C 0.17 3.17 2.92 -66.96 -0.20 2.97 16 13 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 14 C -0.13 -2.17 5.25 -24.90 -0.13 -2.30 16 15 C -0.15 -2.80 7.08 -24.59 -0.17 -2.97 16 16 C 0.17 4.06 5.41 -2.53 -0.01 4.05 16 17 N -0.59 -13.95 2.40 -162.58 -0.39 -14.34 16 18 C -0.22 -5.85 9.79 -15.06 -0.15 -6.00 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 20 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 21 N -0.92 -25.97 10.58 55.49 0.59 -25.39 16 22 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.13 -1.64 5.14 -26.61 -0.14 -1.78 16 27 C 0.10 1.06 4.86 -3.71 -0.02 1.05 16 28 C 0.16 1.90 10.79 -17.13 -0.18 1.71 16 29 N -0.49 -5.56 10.25 -9.14 -0.09 -5.65 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 1.10 6.30 -52.49 -0.33 0.77 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 37 H 0.10 2.05 7.61 -51.93 -0.40 1.65 16 38 H 0.06 1.03 5.99 -51.93 -0.31 0.72 16 39 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 40 H 0.07 1.12 5.49 -51.93 -0.28 0.84 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.62 8.06 -51.93 -0.42 0.21 16 45 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 50 H 0.09 0.80 4.49 -51.93 -0.23 0.56 16 51 H 0.17 1.88 8.04 -52.49 -0.42 1.46 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -31.05 390.85 -10.50 -41.55 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.10 Total: 1.99 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.94 Total: -2.28 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.41 Total: -54.04 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.05 -10.50 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004347048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.078 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds