Wall clock time and date at job start Wed Apr 1 2020 03:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 120.85618 * 2 1 4 4 C 1.38305 * 119.30487 * 180.02562 * 3 2 1 5 5 N 1.31958 * 121.08331 * 359.93098 * 4 3 2 6 6 C 1.31663 * 121.87806 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56618 * 0.02562 * 6 5 4 8 8 C 1.47836 * 120.55821 * 179.70195 * 7 6 5 9 9 O 1.21552 * 120.00067 * 234.12349 * 8 7 6 10 10 N 1.34775 * 120.00400 * 54.12845 * 8 7 6 11 11 C 1.46931 * 120.62588 * 5.62315 * 10 8 7 12 12 C 1.53624 * 108.53791 * 126.37219 * 11 10 8 13 13 C 1.53044 * 109.24387 * 54.86034 * 12 11 10 14 14 C 1.53001 * 109.45845 * 178.48850 * 13 12 11 15 15 H 1.08994 * 109.87758 * 300.38712 * 14 13 12 16 16 C 1.54318 * 109.88329 * 61.57111 * 14 13 12 17 17 C 1.55163 * 102.94286 * 141.60630 * 16 14 13 18 18 C 1.54906 * 101.58186 * 324.49644 * 17 16 14 19 19 N 1.47028 * 109.87629 * 179.37585 * 14 13 12 20 20 C 1.36942 * 125.64906 * 61.68206 * 19 14 13 21 21 H 1.07997 * 119.99966 * 6.04797 * 20 19 14 22 22 C 1.38809 * 119.99946 * 186.04826 * 20 19 14 23 23 N 1.31624 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47098 * 120.00177 * 24 22 20 27 27 H 1.48497 * 109.47123 * 240.00145 * 24 22 20 28 28 C 1.53042 * 109.53321 * 298.50974 * 13 12 11 29 29 C 1.46928 * 120.63530 * 185.91068 * 10 8 7 30 30 H 1.08997 * 109.47403 * 274.84967 * 1 2 3 31 31 H 1.08999 * 109.46843 * 34.85314 * 1 2 3 32 32 H 1.09004 * 109.46629 * 154.85055 * 1 2 3 33 33 H 1.07999 * 120.34547 * 0.03457 * 3 2 1 34 34 H 1.08002 * 119.46095 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.71753 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.58730 * 246.20575 * 11 10 8 37 37 H 1.08997 * 109.58504 * 6.63625 * 11 10 8 38 38 H 1.08995 * 109.64016 * 294.86609 * 12 11 10 39 39 H 1.09002 * 109.43119 * 174.72513 * 12 11 10 40 40 H 1.09004 * 109.45628 * 58.52812 * 13 12 11 41 41 H 1.08998 * 110.72065 * 259.96775 * 16 14 13 42 42 H 1.08997 * 110.72032 * 23.24590 * 16 14 13 43 43 H 1.08998 * 111.00127 * 206.42340 * 17 16 14 44 44 H 1.08998 * 111.03456 * 82.58227 * 17 16 14 45 45 H 1.09002 * 110.36866 * 278.17457 * 18 17 16 46 46 H 1.08996 * 110.46237 * 155.89301 * 18 17 16 47 47 H 0.96995 * 119.99980 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49437 * 301.40749 * 28 13 12 49 49 H 1.08998 * 109.51979 * 181.33239 * 28 13 12 50 50 H 1.08996 * 109.58212 * 353.36935 * 29 10 8 51 51 H 1.08998 * 109.58597 * 113.79287 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 0.0003 6 6 3.6197 -1.1536 0.0012 7 6 2.2249 -1.2017 0.0007 8 6 1.5177 -2.4999 -0.0049 9 8 0.6853 -2.7349 -0.8590 10 7 1.7956 -3.4229 0.9370 11 6 2.7068 -3.1095 2.0463 12 6 1.9918 -3.4233 3.3693 13 6 1.5044 -4.8739 3.3475 14 6 0.8245 -5.2032 4.6780 15 1 1.5293 -5.0668 5.4980 16 6 -0.4036 -4.2908 4.8797 17 6 -1.4407 -5.2431 5.5317 18 6 -1.1268 -6.5811 4.8168 19 7 0.3392 -6.5910 4.6613 20 6 1.1198 -7.7079 4.5250 21 1 2.1959 -7.6168 4.5156 22 6 0.5279 -8.9571 4.3988 23 7 -0.7836 -9.0681 4.4097 24 14 1.5926 -10.4806 4.2121 25 1 3.0249 -10.0886 4.2294 26 1 1.3219 -11.4143 5.3345 27 1 1.2776 -11.1499 2.9245 28 6 0.5046 -5.0607 2.2039 29 6 1.1982 -4.7636 0.8708 30 1 -0.3634 0.0869 1.0239 31 1 -0.3633 0.8433 -0.5873 32 1 -0.3633 -0.9303 -0.4368 33 1 1.6966 2.1345 0.0006 34 1 4.1558 2.0763 -0.0010 35 1 4.1871 -2.0725 0.0023 36 1 3.6079 -3.7168 1.9617 37 1 2.9715 -2.0526 2.0142 38 1 1.1396 -2.7551 3.4926 39 1 2.6860 -3.2853 4.1982 40 1 2.3542 -5.5403 3.1993 41 1 -0.1644 -3.4647 5.5493 42 1 -0.7695 -3.9194 3.9226 43 1 -2.4586 -4.9163 5.3195 44 1 -1.2749 -5.3258 6.6058 45 1 -1.6119 -6.6129 3.8412 46 1 -1.4492 -7.4242 5.4277 47 1 -1.1972 -9.9410 4.3212 48 1 -0.3336 -4.3770 2.3383 49 1 0.1397 -6.0878 2.2032 50 1 0.4674 -4.7984 0.0629 51 1 1.9789 -5.5031 0.6923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004380596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:40 Heat of formation + Delta-G solvation = 23.301371 kcal Electronic energy + Delta-G solvation = -31309.992282 eV Core-core repulsion = 27402.611977 eV Total energy + Delta-G solvation = -3907.380305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09764 -39.59293 -38.34916 -36.43572 -34.14560 -33.20947 -32.36937 -31.72879 -30.60432 -29.36857 -28.31331 -27.55368 -25.15577 -24.52346 -23.58394 -23.18195 -22.32456 -21.33047 -20.17719 -19.56290 -18.41747 -17.56085 -16.84858 -16.72175 -16.59240 -16.03055 -15.21009 -14.96754 -14.70727 -14.65751 -14.35330 -14.06276 -13.87028 -13.81571 -13.41332 -13.19353 -13.15093 -12.98826 -12.66271 -12.57112 -12.16884 -12.07051 -12.05774 -11.88994 -11.50711 -11.25359 -11.02106 -10.92435 -10.82752 -10.44516 -10.32686 -10.17652 -10.05360 -9.85752 -9.79803 -9.70654 -9.61822 -9.57539 -9.43138 -9.33017 -8.64580 -8.54158 -6.80967 -5.69060 -3.06062 0.52444 0.87994 2.53725 2.93641 3.38361 3.44382 3.44775 3.46624 4.04521 4.29934 4.37652 4.42846 4.48041 4.73370 4.86857 5.02746 5.09611 5.17489 5.20855 5.32606 5.35271 5.36048 5.41584 5.48556 5.51762 5.54976 5.67094 5.71146 5.75484 5.81500 5.84858 5.90637 5.96047 6.01949 6.11249 6.18360 6.25837 6.28806 6.35285 6.45050 6.51919 6.57565 6.63185 6.76988 6.94855 7.01313 7.12853 7.36062 7.57251 7.58732 7.62730 7.85812 8.05362 8.32952 9.22237 9.83966 10.50709 11.38712 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.002931 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.568125 B = 9551.206092 C =10031.378539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.006 3.994 3 C -0.179 4.179 4 C 0.114 3.886 5 N -0.489 5.489 6 C 0.136 3.864 7 C -0.177 4.177 8 C 0.564 3.436 9 O -0.536 6.536 10 N -0.596 5.596 11 C 0.105 3.895 12 C -0.128 4.128 13 C -0.093 4.093 14 C 0.167 3.833 15 H 0.031 0.969 16 C -0.128 4.128 17 C -0.150 4.150 18 C 0.164 3.836 19 N -0.594 5.594 20 C -0.219 4.219 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.116 4.116 29 C 0.110 3.890 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.016 0.984 46 H 0.088 0.912 47 H 0.251 0.749 48 H 0.058 0.942 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 20.015 -5.599 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.002 4.002 3 C -0.199 4.199 4 C -0.042 4.042 5 N -0.198 5.198 6 C -0.022 4.022 7 C -0.182 4.182 8 C 0.351 3.649 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.018 4.018 12 C -0.166 4.166 13 C -0.114 4.114 14 C 0.060 3.940 15 H 0.049 0.951 16 C -0.166 4.166 17 C -0.188 4.188 18 C 0.040 3.960 19 N -0.317 5.317 20 C -0.347 4.347 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.154 4.154 29 C -0.011 4.011 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.106 0.894 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.106 0.894 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.473 19.621 -6.058 21.252 hybrid contribution -0.233 -0.784 -0.080 0.822 sum 5.241 18.837 -6.138 20.493 Atomic orbital electron populations 1.21091 0.89604 1.05293 1.03250 1.20372 0.97204 0.91398 0.91248 1.22019 0.95590 0.98583 1.03727 1.22924 0.91731 0.96424 0.93089 1.67719 1.40707 0.98244 1.13145 1.22961 0.90083 0.96662 0.92510 1.20890 0.95605 0.94444 1.07308 1.18078 0.82027 0.83182 0.81579 1.90758 1.33451 1.79085 1.38074 1.48157 1.46376 1.13543 1.24768 1.21988 0.92482 1.00838 0.86516 1.22058 1.00291 0.98693 0.95588 1.21599 0.98636 0.93646 0.97529 1.20896 0.93575 0.86193 0.93366 0.95125 1.22670 0.96861 0.97161 0.99933 1.23011 0.97157 0.98993 0.99672 1.21644 0.83880 0.93340 0.97167 1.44535 1.02943 0.99234 1.85022 1.19017 0.89480 0.84034 1.42207 0.90696 1.24765 0.95773 0.97550 1.02374 1.69910 1.07521 1.22404 1.56936 0.86107 0.79294 0.83426 0.77321 1.20596 1.21906 1.21829 1.21869 0.97683 1.03825 0.92055 1.21820 0.98118 0.81109 1.00052 0.90211 0.90573 0.88827 0.84176 0.82331 0.82265 0.91011 0.90491 0.91721 0.91049 0.91229 0.92887 0.91616 0.92759 0.92574 0.96621 0.89384 0.93871 0.92323 0.88629 0.89352 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.76 36.01 0.35 -0.96 16 2 C 0.01 0.06 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.46 9.82 -39.50 -0.39 -1.85 16 4 C 0.11 0.96 11.17 -17.47 -0.20 0.77 16 5 N -0.49 -5.23 10.35 -12.91 -0.13 -5.37 16 6 C 0.14 1.47 8.98 -17.13 -0.15 1.32 16 7 C -0.18 -2.10 4.61 -104.82 -0.48 -2.58 16 8 C 0.56 7.96 6.60 -12.33 -0.08 7.88 16 9 O -0.54 -9.19 14.61 5.32 0.08 -9.11 16 10 N -0.60 -7.99 2.97 -173.62 -0.51 -8.50 16 11 C 0.10 1.19 5.62 -3.48 -0.02 1.17 16 12 C -0.13 -1.62 5.13 -26.38 -0.14 -1.76 16 13 C -0.09 -1.52 1.92 -90.57 -0.17 -1.69 16 14 C 0.17 3.16 2.94 -66.95 -0.20 2.96 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.15 5.24 -24.90 -0.13 -2.28 16 17 C -0.15 -2.78 7.09 -24.58 -0.17 -2.95 16 18 C 0.16 3.83 5.66 -2.53 -0.01 3.82 16 19 N -0.59 -13.96 2.34 -162.57 -0.38 -14.34 16 20 C -0.22 -5.70 9.85 -15.06 -0.15 -5.85 16 21 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 23 N -0.92 -26.04 10.25 55.49 0.57 -25.48 16 24 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.12 -1.96 4.92 -26.61 -0.13 -2.09 16 29 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.09 1.15 5.70 -51.93 -0.30 0.86 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.16 1.52 7.76 -52.49 -0.41 1.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 5.39 -51.93 -0.28 0.51 16 38 H 0.06 0.83 7.20 -51.93 -0.37 0.46 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.07 5.49 -51.93 -0.28 0.79 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.34 6.29 -51.93 -0.33 2.02 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.06 1.00 6.06 -51.93 -0.31 0.68 16 49 H 0.10 1.98 7.57 -51.93 -0.39 1.58 16 50 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -30.52 388.67 -10.43 -40.95 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.07 Total: 2.79 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.81 Total: -3.33 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.46 Total: -53.68 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.52 -10.43 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004380596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.255 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds