Wall clock time and date at job start Wed Apr 1 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31693 * 119.71304 * 2 1 4 4 C 1.31928 * 121.87723 * 180.28736 * 3 2 1 5 5 C 1.38352 * 121.08000 * 359.68135 * 4 3 2 6 6 C 1.38355 * 119.30066 * 0.02562 * 5 4 3 7 7 C 1.39513 * 119.71681 * 179.70792 * 2 1 3 8 8 C 1.47841 * 120.56174 * 0.02562 * 7 2 1 9 9 O 1.21555 * 119.99736 * 305.75806 * 8 7 2 10 10 N 1.34775 * 119.99910 * 125.76326 * 8 7 2 11 11 C 1.46932 * 120.62699 * 183.44131 * 10 8 7 12 12 C 1.53190 * 108.77071 * 126.41162 * 11 10 8 13 13 C 1.53038 * 109.31413 * 54.63720 * 12 11 10 14 14 C 1.53007 * 109.46318 * 178.62729 * 13 12 11 15 15 H 1.08998 * 109.87385 * 182.63461 * 14 13 12 16 16 C 1.54322 * 109.88228 * 61.45316 * 14 13 12 17 17 C 1.55156 * 102.94440 * 218.39121 * 16 14 13 18 18 C 1.54910 * 101.57809 * 35.50438 * 17 16 14 19 19 N 1.47025 * 109.87876 * 303.64764 * 14 13 12 20 20 C 1.36938 * 125.64740 * 298.39572 * 19 14 13 21 21 H 1.07998 * 119.99702 * 345.95727 * 20 19 14 22 22 C 1.38809 * 119.99732 * 165.97010 * 20 19 14 23 23 N 1.31622 * 120.00474 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00094 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47256 * 119.99257 * 24 22 20 27 27 H 1.48497 * 109.47353 * 239.99481 * 24 22 20 28 28 C 1.53040 * 109.53655 * 298.63270 * 13 12 11 29 29 C 1.46923 * 120.63440 * 3.46607 * 10 8 7 30 30 H 1.08993 * 109.47138 * 264.63540 * 1 2 3 31 31 H 1.08994 * 109.47427 * 24.64129 * 1 2 3 32 32 H 1.09001 * 109.46721 * 144.63679 * 1 2 3 33 33 H 1.08000 * 119.45821 * 179.69731 * 4 3 2 34 34 H 1.08002 * 120.34897 * 179.97438 * 5 4 3 35 35 H 1.08006 * 120.85298 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.58708 * 6.62798 * 11 10 8 37 37 H 1.08996 * 109.70274 * 246.26906 * 11 10 8 38 38 H 1.09003 * 109.50223 * 294.68288 * 12 11 10 39 39 H 1.09002 * 109.50036 * 174.58640 * 12 11 10 40 40 H 1.08995 * 109.46417 * 58.65548 * 13 12 11 41 41 H 1.09007 * 110.72063 * 336.76148 * 16 14 13 42 42 H 1.09007 * 110.71744 * 100.02930 * 16 14 13 43 43 H 1.08995 * 111.00399 * 277.43098 * 17 16 14 44 44 H 1.08998 * 111.00537 * 153.57764 * 17 16 14 45 45 H 1.08997 * 110.36611 * 204.15137 * 18 17 16 46 46 H 1.09001 * 110.46348 * 81.87550 * 18 17 16 47 47 H 0.96996 * 120.00543 * 179.97438 * 23 22 20 48 48 H 1.09011 * 109.49959 * 181.31649 * 28 13 12 49 49 H 1.08997 * 109.49962 * 301.40808 * 28 13 12 50 50 H 1.09007 * 109.58521 * 353.37508 * 29 10 8 51 51 H 1.08999 * 109.59069 * 113.79719 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0056 5 6 4.2366 0.0365 -0.0052 6 6 3.5987 -1.1912 0.0007 7 6 2.1986 -1.2116 0.0062 8 6 1.4657 -2.4955 0.0122 9 8 0.6298 -2.7142 0.8672 10 7 1.7244 -3.4236 -0.9303 11 6 0.9522 -4.6725 -0.9829 12 6 0.3801 -4.8394 -2.3941 13 6 1.5182 -4.7606 -3.4142 14 6 0.9552 -4.9610 -4.8228 15 1 1.7663 -4.9528 -5.5507 16 6 -0.0573 -3.8425 -5.1473 17 6 -1.1617 -4.5921 -5.9383 18 6 -1.1796 -5.9654 -5.2217 19 7 0.2317 -6.2390 -4.8948 20 6 0.7781 -7.4780 -4.6911 21 1 1.8512 -7.5997 -4.6805 22 6 -0.0472 -8.5773 -4.4985 23 7 -1.3550 -8.4288 -4.5112 24 14 0.6981 -10.2676 -4.2214 25 1 2.1794 -10.1667 -4.2529 26 1 0.2651 -10.7890 -2.9000 27 1 0.2424 -11.1911 -5.2913 28 6 2.1915 -3.3892 -3.3250 29 6 2.7841 -3.2058 -1.9244 30 1 -0.3633 -0.0961 1.0231 31 1 -0.3634 0.9340 -0.4284 32 1 -0.3633 -0.8381 -0.5948 33 1 3.9733 2.1534 -0.0104 34 1 5.3152 0.0911 -0.0103 35 1 4.1662 -2.1102 0.0007 36 1 0.1368 -4.6287 -0.2609 37 1 1.6017 -5.5162 -0.7498 38 1 -0.3404 -4.0455 -2.5909 39 1 -0.1139 -5.8077 -2.4744 40 1 2.2508 -5.5393 -3.2019 41 1 -0.4632 -3.4121 -4.2317 42 1 0.4042 -3.0721 -5.7653 43 1 -0.8850 -4.7021 -6.9868 44 1 -2.1230 -4.0878 -5.8404 45 1 -1.5710 -6.7352 -5.8867 46 1 -1.7764 -5.9124 -4.3112 47 1 -1.9317 -9.1971 -4.3770 48 1 2.9868 -3.3252 -4.0678 49 1 1.4540 -2.6089 -3.5131 50 1 3.1775 -2.1942 -1.8236 51 1 3.5851 -3.9286 -1.7690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004522570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:01 Heat of formation + Delta-G solvation = 24.084066 kcal Electronic energy + Delta-G solvation = -31421.749099 eV Core-core repulsion = 27514.402734 eV Total energy + Delta-G solvation = -3907.346365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.09488 -39.58625 -38.32316 -36.40619 -33.56781 -33.08489 -32.70580 -32.01376 -30.74263 -29.36699 -28.16679 -27.53065 -25.21577 -24.52442 -23.54272 -23.16357 -22.27229 -21.33078 -20.20590 -19.61643 -18.39631 -17.40586 -17.01964 -16.68419 -16.48202 -15.98761 -15.17243 -15.04087 -14.69731 -14.51636 -14.41143 -13.92046 -13.89709 -13.77639 -13.52238 -13.26022 -13.02120 -12.68739 -12.56814 -12.37379 -12.23350 -12.14804 -12.08364 -11.85238 -11.49567 -11.26108 -11.00565 -10.91519 -10.85015 -10.41528 -10.27492 -10.25352 -10.08756 -9.99222 -9.85166 -9.72446 -9.64918 -9.50265 -9.45126 -9.20840 -8.61015 -8.52971 -6.76767 -5.74631 -3.09499 0.54727 0.88774 2.56882 2.95958 3.37135 3.43434 3.45586 3.46346 3.98003 4.28128 4.42932 4.47359 4.48842 4.74845 4.87239 5.05777 5.07859 5.22090 5.24929 5.36432 5.38716 5.43047 5.46300 5.51804 5.53364 5.68446 5.71645 5.72910 5.75767 5.81470 5.86449 5.90069 5.90688 5.97698 6.12418 6.20211 6.26799 6.31402 6.35866 6.46590 6.53482 6.57557 6.63358 6.76392 6.98450 7.04378 7.15482 7.37883 7.56166 7.63750 7.63921 7.81363 8.08638 8.28983 9.20515 9.82060 10.51542 11.37120 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.003007 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.616740 B = 9309.220843 C = 9721.004394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.177 3.823 3 N -0.486 5.486 4 C 0.118 3.882 5 C -0.185 4.185 6 C -0.044 4.044 7 C -0.174 4.174 8 C 0.563 3.437 9 O -0.534 6.534 10 N -0.596 5.596 11 C 0.111 3.889 12 C -0.116 4.116 13 C -0.092 4.092 14 C 0.167 3.833 15 H 0.030 0.970 16 C -0.127 4.127 17 C -0.150 4.150 18 C 0.174 3.826 19 N -0.592 5.592 20 C -0.224 4.224 21 H 0.073 0.927 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C -0.129 4.129 29 C 0.101 3.899 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.252 0.748 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 17.167 5.792 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 N -0.196 5.196 4 C -0.039 4.039 5 C -0.205 4.205 6 C -0.070 4.070 7 C -0.179 4.179 8 C 0.349 3.651 9 O -0.411 6.411 10 N -0.328 5.328 11 C -0.010 4.010 12 C -0.154 4.154 13 C -0.113 4.113 14 C 0.059 3.941 15 H 0.048 0.952 16 C -0.165 4.165 17 C -0.189 4.189 18 C 0.049 3.951 19 N -0.316 5.316 20 C -0.352 4.352 21 H 0.091 0.909 22 C -0.201 4.201 23 N -0.563 5.563 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.168 4.168 29 C -0.022 4.022 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.736 17.556 6.264 20.586 hybrid contribution 1.136 -1.768 0.132 2.106 sum 9.872 15.788 6.396 19.688 Atomic orbital electron populations 1.20788 0.87984 1.03522 1.04027 1.21373 0.97283 0.86589 0.90876 1.67607 1.10048 1.28514 1.13390 1.22936 0.89378 0.98743 0.92865 1.22067 1.01761 0.92992 1.03683 1.21755 0.92862 0.99133 0.93226 1.20822 0.94783 0.95167 1.07139 1.18067 0.82460 0.82938 0.81613 1.90791 1.34250 1.79098 1.36970 1.48143 1.35999 1.18978 1.29721 1.21815 0.95803 0.83856 0.99556 1.21866 0.97859 1.04102 0.91563 1.21576 0.97148 0.94559 0.97980 1.20918 0.93443 0.86963 0.92737 0.95204 1.22646 0.97320 0.97035 0.99489 1.23011 0.97184 0.99585 0.99131 1.21406 0.85926 0.91135 0.96643 1.44495 1.05534 0.99952 1.81663 1.18959 0.91245 0.83193 1.41821 0.90934 1.24847 0.95476 0.98081 1.01668 1.69941 1.01667 1.28996 1.55677 0.86155 0.78167 0.84603 0.77498 1.20570 1.21762 1.21885 1.22007 1.00498 0.99408 0.94892 1.21990 0.89698 1.01615 0.88886 0.89374 0.90257 0.90458 0.82302 0.84124 0.84193 0.89399 0.91408 0.92490 0.88209 0.91364 0.91661 0.92851 0.92598 0.92675 0.91322 0.95778 0.93803 0.91131 0.91666 0.90181 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.14 36.01 0.33 -0.90 16 2 C 0.18 2.18 6.82 -82.17 -0.56 1.62 16 3 N -0.49 -5.60 10.26 -9.14 -0.09 -5.69 16 4 C 0.12 1.01 11.17 -17.47 -0.20 0.82 16 5 C -0.19 -1.40 10.10 -39.50 -0.40 -1.80 16 6 C -0.04 -0.41 7.58 -38.87 -0.29 -0.70 16 7 C -0.17 -2.12 4.88 -104.82 -0.51 -2.63 16 8 C 0.56 8.15 6.19 -12.33 -0.08 8.07 16 9 O -0.53 -9.39 15.62 5.32 0.08 -9.30 16 10 N -0.60 -8.14 2.97 -173.88 -0.52 -8.66 16 11 C 0.11 1.72 6.42 -3.71 -0.02 1.69 16 12 C -0.12 -2.00 4.94 -26.61 -0.13 -2.13 16 13 C -0.09 -1.50 1.91 -90.58 -0.17 -1.67 16 14 C 0.17 3.14 2.97 -66.95 -0.20 2.94 16 15 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 16 C -0.13 -2.12 5.20 -24.90 -0.13 -2.25 16 17 C -0.15 -2.77 7.09 -24.58 -0.17 -2.94 16 18 C 0.17 4.02 5.42 -2.53 -0.01 4.01 16 19 N -0.59 -13.86 2.21 -162.57 -0.36 -14.22 16 20 C -0.22 -5.80 9.88 -15.06 -0.15 -5.95 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 22 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 23 N -0.92 -25.82 10.55 55.49 0.59 -25.23 16 24 Si 0.90 21.42 29.55 -169.99 -5.02 16.39 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 C -0.13 -1.64 5.07 -26.61 -0.13 -1.78 16 29 C 0.10 1.14 5.56 -3.71 -0.02 1.12 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.96 7.19 -51.93 -0.37 0.59 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 1.08 7.44 -52.48 -0.39 0.69 16 36 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 39 H 0.10 2.13 7.48 -51.93 -0.39 1.74 16 40 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 41 H 0.06 1.07 5.50 -51.93 -0.29 0.78 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.80 6.89 -51.93 -0.36 1.45 16 46 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 49 H 0.06 0.85 7.01 -51.93 -0.36 0.49 16 50 H 0.08 0.78 4.77 -51.92 -0.25 0.53 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -30.63 389.47 -10.54 -41.17 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.13 Total: 2.35 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.95 Total: -2.68 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.38 Total: -53.80 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.63 -10.54 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004522570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.254 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds