Wall clock time and date at job start Wed Apr 1 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 119.46080 * 2 1 4 4 C 1.38360 * 119.30342 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.85412 * 180.02562 * 4 3 2 6 6 C 1.40026 * 118.28661 * 0.02562 * 4 3 2 7 7 C 1.47842 * 120.55725 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99960 * 270.01712 * 7 6 4 9 9 N 1.34778 * 119.99814 * 90.01819 * 7 6 4 10 10 C 1.46503 * 119.99737 * 180.02562 * 9 7 6 11 11 C 1.53146 * 109.43699 * 119.96365 * 10 9 7 12 12 C 1.53702 * 108.87745 * 66.17211 * 11 10 9 13 13 H 1.08998 * 112.10031 * 188.25490 * 12 11 10 14 14 C 1.54607 * 107.83331 * 312.23244 * 12 11 10 15 15 C 1.54312 * 104.75553 * 88.66500 * 14 12 11 16 16 C 1.54614 * 104.74462 * 0.02562 * 15 14 12 17 17 H 1.08997 * 112.18916 * 146.80000 * 16 15 14 18 18 C 1.53145 * 109.43103 * 240.14097 * 10 9 7 19 19 N 1.48290 * 104.26236 * 25.13957 * 16 15 14 20 20 C 1.36935 * 128.20981 * 138.43293 * 19 16 15 21 21 H 1.08003 * 119.99464 * 195.29671 * 20 19 16 22 22 C 1.38808 * 120.00216 * 15.28576 * 20 19 16 23 23 N 1.31620 * 120.00010 * 9.25612 * 22 20 19 24 24 Si 1.86796 * 120.00152 * 189.24625 * 22 20 19 25 25 H 1.48498 * 109.47105 * 90.00208 * 24 22 20 26 26 H 1.48501 * 109.47450 * 210.00578 * 24 22 20 27 27 H 1.48505 * 109.47111 * 330.00638 * 24 22 20 28 28 C 1.39517 * 118.88161 * 359.97438 * 6 4 3 29 29 C 1.50698 * 119.71387 * 179.97438 * 28 6 4 30 30 N 1.31697 * 120.56892 * 0.25542 * 28 6 4 31 31 H 1.09002 * 109.46770 * 90.00184 * 1 2 3 32 32 H 1.08997 * 109.47404 * 210.00099 * 1 2 3 33 33 H 1.08999 * 109.47071 * 330.00580 * 1 2 3 34 34 H 1.08002 * 120.34632 * 0.04078 * 3 2 1 35 35 H 1.09001 * 109.47494 * 269.97891 * 5 4 3 36 36 H 1.09005 * 109.47239 * 29.98515 * 5 4 3 37 37 H 1.09000 * 109.46930 * 149.98168 * 5 4 3 38 38 H 0.97002 * 119.99962 * 359.97438 * 9 7 6 39 39 H 1.09001 * 109.43504 * 0.04846 * 10 9 7 40 40 H 1.08997 * 109.57182 * 185.99581 * 11 10 9 41 41 H 1.09005 * 109.56622 * 306.35429 * 11 10 9 42 42 H 1.08999 * 110.38429 * 207.48944 * 14 12 11 43 43 H 1.09000 * 110.38531 * 329.73573 * 14 12 11 44 44 H 1.08998 * 110.37979 * 118.81275 * 15 14 12 45 45 H 1.08999 * 110.38489 * 241.18158 * 15 14 12 46 46 H 1.08996 * 109.56958 * 53.64333 * 18 10 9 47 47 H 1.09005 * 109.56668 * 174.00408 * 18 10 9 48 48 H 0.96996 * 120.00111 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.47182 * 90.00013 * 29 28 6 50 50 H 1.09004 * 109.47031 * 209.99716 * 29 28 6 51 51 H 1.09000 * 109.47312 * 329.99995 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3474 2.4923 0.0000 6 6 4.2312 -0.0340 -0.0016 7 6 5.7083 -0.0967 -0.0028 8 8 6.3147 -0.1216 -1.0560 9 7 6.3825 -0.1261 1.1639 10 6 7.8462 -0.1876 1.1627 11 6 8.4084 1.0403 1.8848 12 6 8.0176 0.9664 3.3694 13 1 8.2659 1.8828 3.9049 14 6 6.5093 0.6356 3.4461 15 6 6.4444 -0.9061 3.4427 16 6 7.9198 -1.3619 3.3649 17 1 8.0921 -2.2927 3.9053 18 6 8.3032 -1.4611 1.8801 19 7 8.6831 -0.2291 3.9420 20 6 9.7501 -0.2759 4.7990 21 1 10.0541 0.6130 5.3318 22 6 10.4408 -1.4657 4.9830 23 7 10.1919 -2.4982 4.2056 24 14 11.7239 -1.6016 6.3338 25 1 11.0773 -2.0721 7.5851 26 1 12.7731 -2.5694 5.9245 27 1 12.3412 -0.2710 6.5658 28 6 3.4716 -1.2043 -0.0016 29 6 4.1627 -2.5434 -0.0033 30 7 2.1558 -1.1487 -0.0056 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6443 2.1381 0.0007 35 1 4.5346 2.8043 -1.0275 36 1 3.7719 3.2621 0.5144 37 1 5.2974 2.3449 0.5137 38 1 5.8985 -0.1059 2.0043 39 1 8.2078 -0.2010 0.1345 40 1 9.4945 1.0522 1.7932 41 1 7.9931 1.9459 1.4425 42 1 6.0801 1.0316 4.3665 43 1 5.9871 1.0411 2.5795 44 1 5.9834 -1.2687 4.3614 45 1 5.8907 -1.2609 2.5734 46 1 7.8134 -2.3269 1.4346 47 1 9.3845 -1.5638 1.7883 48 1 10.6743 -3.3298 4.3345 49 1 4.3305 -2.8671 1.0240 50 1 3.5378 -3.2741 -0.5169 51 1 5.1196 -2.4578 -0.5182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021331692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:31 Heat of formation + Delta-G solvation = 86.819978 kcal Electronic energy + Delta-G solvation = -32138.047246 eV Core-core repulsion = 28233.421315 eV Total energy + Delta-G solvation = -3904.625932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39330 -40.36772 -38.17282 -34.38646 -34.19401 -33.83924 -32.16261 -31.27993 -30.32424 -29.37758 -28.99659 -27.96727 -27.32237 -24.66105 -23.36226 -22.86960 -21.56174 -21.11817 -20.35959 -19.63936 -19.36424 -17.80193 -17.14064 -16.83954 -15.73473 -15.10964 -14.96324 -14.87120 -14.29060 -14.10254 -14.05237 -13.65655 -13.50003 -13.38177 -13.15681 -13.08815 -12.97487 -12.92484 -12.74759 -12.42767 -12.25158 -12.11387 -12.07102 -11.88555 -11.80489 -11.69282 -11.57544 -10.99700 -10.94295 -10.69444 -10.43648 -10.32262 -10.09447 -10.01758 -9.74798 -9.58635 -9.53741 -9.40799 -9.33395 -8.88807 -8.67172 -8.24679 -6.88020 -5.82468 -3.17714 0.78912 1.06110 2.77558 3.35230 3.40307 3.41507 3.42894 3.60806 4.03046 4.39104 4.41626 4.43440 4.87367 4.89172 5.08414 5.16060 5.21967 5.24369 5.29502 5.32662 5.37857 5.38556 5.40212 5.51131 5.55634 5.58061 5.60715 5.68083 5.74192 5.80891 5.83637 5.93929 5.96227 5.98441 6.04156 6.07624 6.14020 6.27687 6.47646 6.49289 6.52273 6.52709 6.58368 6.73597 6.84505 6.96558 7.07811 7.47006 7.49662 7.69037 7.81087 7.85358 8.16617 8.47064 9.07509 9.69636 10.47505 11.30004 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003139 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.720274 B = 8916.940115 C = 9100.808894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.124 4.124 6 C -0.183 4.183 7 C 0.553 3.447 8 O -0.545 6.545 9 N -0.726 5.726 10 C 0.140 3.860 11 C -0.137 4.137 12 C 0.150 3.850 13 H 0.068 0.932 14 C -0.161 4.161 15 C -0.174 4.174 16 C 0.184 3.816 17 H 0.112 0.888 18 C -0.123 4.123 19 N -0.582 5.582 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.911 5.911 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.173 3.827 29 C -0.114 4.114 30 N -0.488 5.488 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.429 0.571 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.254 0.746 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.711 6.628 -6.901 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.204 4.204 4 C -0.011 4.011 5 C -0.180 4.180 6 C -0.188 4.188 7 C 0.337 3.663 8 O -0.424 6.424 9 N -0.398 5.398 10 C 0.036 3.964 11 C -0.178 4.178 12 C 0.042 3.958 13 H 0.086 0.914 14 C -0.201 4.201 15 C -0.214 4.214 16 C 0.077 3.923 17 H 0.129 0.871 18 C -0.163 4.163 19 N -0.303 5.303 20 C -0.354 4.354 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.557 5.557 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.035 3.965 29 C -0.171 4.171 30 N -0.199 5.199 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.289 0.711 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.101 0.899 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.540 5.684 -7.439 19.005 hybrid contribution 0.931 0.730 0.886 1.478 sum -15.609 6.415 -6.553 18.103 Atomic orbital electron populations 1.20735 0.88633 1.03595 1.03153 1.21383 0.97044 0.88146 0.92936 1.21720 0.93641 0.99423 1.05641 1.20320 0.93767 0.94500 0.92510 1.20926 1.00199 0.93344 1.03553 1.20809 0.95167 0.94482 1.08328 1.18232 0.86203 0.76545 0.85306 1.90756 1.69169 1.50524 1.31934 1.49198 1.09198 1.71935 1.09453 1.21162 0.78020 0.96799 1.00388 1.22506 1.01435 0.95840 0.97980 1.21516 0.90258 0.92343 0.91657 0.91354 1.23270 0.99622 0.96503 1.00700 1.23444 1.02026 0.95174 1.00710 1.21465 0.84907 0.94324 0.91640 0.87066 1.22358 1.02649 0.93632 0.97670 1.45157 1.33746 0.99468 1.51940 1.18978 1.04422 0.96521 1.15436 0.90699 1.24833 0.98863 0.97040 0.99304 1.69853 1.44192 1.03066 1.38550 0.86157 0.80903 0.77374 0.81505 1.21660 1.21749 1.20704 1.21314 0.88818 0.94734 0.91654 1.20860 1.00292 0.92062 1.03878 1.67367 1.08874 1.29086 1.14599 0.90287 0.90294 0.90593 0.84425 0.89876 0.90423 0.90621 0.71117 0.89793 0.90676 0.93453 0.92120 0.90634 0.92182 0.90651 0.93737 0.89504 0.93612 0.89546 0.89878 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.16 36.01 0.37 -0.41 16 2 C 0.14 1.59 6.78 -82.51 -0.56 1.03 16 3 C -0.18 -1.92 9.43 -39.49 -0.37 -2.29 16 4 C 0.00 -0.04 5.95 -103.91 -0.62 -0.65 16 5 C -0.12 -1.28 9.69 36.00 0.35 -0.93 16 6 C -0.18 -2.65 5.65 -104.82 -0.59 -3.24 16 7 C 0.55 9.07 4.35 -12.33 -0.05 9.01 16 8 O -0.55 -10.74 16.43 5.32 0.09 -10.65 16 9 N -0.73 -11.55 2.77 -54.60 -0.15 -11.70 16 10 C 0.14 2.53 3.15 -67.78 -0.21 2.32 16 11 C -0.14 -2.45 5.49 -26.29 -0.14 -2.60 16 12 C 0.15 2.85 4.32 -65.72 -0.28 2.57 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.16 -2.62 5.75 -25.20 -0.14 -2.76 16 15 C -0.17 -3.04 5.76 -25.20 -0.15 -3.18 16 16 C 0.18 3.95 3.13 -65.75 -0.21 3.75 16 17 H 0.11 2.78 6.36 -51.93 -0.33 2.45 16 18 C -0.12 -2.51 5.40 -26.31 -0.14 -2.65 16 19 N -0.58 -13.44 2.82 -152.76 -0.43 -13.87 16 20 C -0.23 -5.84 10.38 -15.06 -0.16 -6.00 16 21 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 22 C 0.00 -0.08 5.42 -17.43 -0.09 -0.18 16 23 N -0.91 -24.76 10.60 55.49 0.59 -24.17 16 24 Si 0.91 21.14 29.56 -169.99 -5.03 16.11 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.17 2.45 6.82 -82.17 -0.56 1.89 16 29 C -0.11 -1.46 9.79 36.00 0.35 -1.11 16 30 N -0.49 -6.57 10.17 -5.42 -0.06 -6.62 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.07 0.88 7.19 -51.93 -0.37 0.51 16 38 H 0.43 6.48 1.89 -65.42 -0.12 6.36 16 39 H 0.08 1.61 6.89 -51.93 -0.36 1.26 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.10 5.27 -51.93 -0.27 0.83 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.21 5.27 -51.93 -0.27 0.94 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.05 8.00 -51.93 -0.42 1.63 16 48 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.08 1.13 7.07 -51.93 -0.37 0.77 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -30.00 388.99 -10.32 -40.32 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.97 Total: 10.15 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.22 Total: -5.43 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.05 Total: -56.37 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.00 -10.32 -40.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021331692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.143 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds