Wall clock time and date at job start Wed Apr 1 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38156 * 119.55341 * 2 1 4 4 C 1.39810 * 119.00197 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92558 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99971 * 31.32764 * 5 4 3 7 7 N 1.34774 * 120.00459 * 211.33533 * 5 4 3 8 8 C 1.47067 * 120.84189 * 359.13143 * 7 5 4 9 9 C 1.53598 * 108.79614 * 126.52668 * 8 7 5 10 10 C 1.53144 * 109.54310 * 54.23561 * 9 8 7 11 11 C 1.52822 * 109.26632 * 299.01945 * 10 9 8 12 12 H 1.08997 * 109.46565 * 302.00717 * 11 10 9 13 13 C 1.53056 * 110.34303 * 181.46479 * 11 10 9 14 14 N 1.47071 * 108.33132 * 184.55263 * 13 11 10 15 15 C 1.36935 * 120.47411 * 233.30011 * 14 13 11 16 16 H 1.08001 * 120.00628 * 152.60554 * 15 14 13 17 17 C 1.38818 * 120.00169 * 332.60780 * 15 14 13 18 18 N 1.31625 * 119.99531 * 343.93755 * 17 15 14 19 19 Si 1.86787 * 120.00570 * 163.94129 * 17 15 14 20 20 H 1.48511 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47614 * 119.99535 * 19 17 15 22 22 H 1.48501 * 109.47290 * 240.00023 * 19 17 15 23 23 C 1.46868 * 119.05735 * 53.32140 * 14 13 11 24 24 C 1.53315 * 109.10223 * 307.34587 * 23 14 13 25 25 C 1.46715 * 120.84727 * 179.40632 * 7 5 4 26 26 H 1.08999 * 109.52613 * 114.57313 * 25 7 5 27 27 C 1.39819 * 118.15863 * 0.24865 * 4 3 2 28 28 C 1.38158 * 118.99757 * 359.48504 * 27 4 3 29 29 C 1.50695 * 119.55051 * 180.27306 * 28 27 4 30 30 N 1.31809 * 119.55254 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47082 * 89.99730 * 1 2 3 32 32 H 1.08997 * 109.47067 * 210.00440 * 1 2 3 33 33 H 1.09005 * 109.47210 * 329.99829 * 1 2 3 34 34 H 1.08002 * 120.49495 * 359.97382 * 3 2 1 35 35 H 1.09003 * 109.53744 * 246.44150 * 8 7 5 36 36 H 1.08997 * 109.54541 * 6.69762 * 8 7 5 37 37 H 1.09005 * 109.59271 * 294.14895 * 9 8 7 38 38 H 1.08996 * 109.35372 * 174.17992 * 9 8 7 39 39 H 1.08996 * 109.50870 * 179.08247 * 10 9 8 40 40 H 1.09006 * 109.50296 * 58.95334 * 10 9 8 41 41 H 1.09000 * 109.69526 * 64.84357 * 13 11 10 42 42 H 1.08993 * 109.72597 * 304.28066 * 13 11 10 43 43 H 0.97001 * 120.00091 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.53056 * 187.45689 * 23 14 13 45 45 H 1.09000 * 109.52699 * 67.22972 * 23 14 13 46 46 H 1.08996 * 109.55562 * 294.26431 * 24 23 14 47 47 H 1.09000 * 109.55668 * 173.94370 * 24 23 14 48 48 H 1.08001 * 120.50135 * 179.72342 * 27 4 3 49 49 H 1.09002 * 109.47052 * 270.25525 * 29 28 27 50 50 H 1.09001 * 109.47342 * 30.25256 * 29 28 27 51 51 H 1.08999 * 109.47172 * 150.25541 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3600 2.4519 -0.0011 6 8 3.9108 3.4395 0.5460 7 7 5.5619 2.5060 -0.6086 8 6 6.1316 1.3169 -1.2601 9 6 6.5019 1.6751 -2.7071 10 6 7.4194 2.9012 -2.7126 11 6 6.6828 4.0851 -2.0871 12 1 5.7651 4.2768 -2.6431 13 6 7.5657 5.3351 -2.1130 14 7 6.8605 6.4143 -1.4052 15 6 6.6639 7.6278 -2.0084 16 1 5.8202 8.2405 -1.7270 17 6 7.5492 8.0707 -2.9817 18 7 8.7288 7.5003 -3.1068 19 14 7.0665 9.4759 -4.1136 20 1 5.6983 9.9404 -3.7704 21 1 8.0263 10.5969 -3.9483 22 1 7.0907 9.0073 -5.5226 23 6 6.3704 6.1721 -0.0421 24 6 5.5202 4.8963 -0.0338 25 6 6.3378 3.7510 -0.6316 26 1 7.2548 3.6194 -0.0572 27 6 4.2344 -0.0506 -0.0064 28 6 3.4740 -1.2041 -0.0006 29 6 4.1594 -2.5462 -0.0005 30 7 2.1571 -1.1466 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6492 2.1376 -0.0004 35 1 7.0235 0.9979 -0.7207 36 1 5.3960 0.5127 -1.2587 37 1 5.5964 1.8969 -3.2719 38 1 7.0190 0.8328 -3.1667 39 1 7.6950 3.1451 -3.7386 40 1 8.3184 2.6857 -2.1350 41 1 7.7510 5.6326 -3.1451 42 1 8.5127 5.1269 -1.6152 43 1 9.3476 7.8099 -3.7867 44 1 5.7629 7.0170 0.2822 45 1 7.2172 6.0501 0.6332 46 1 4.6214 5.0530 -0.6302 47 1 5.2418 4.6500 0.9908 48 1 5.3130 -0.1051 -0.0115 49 1 4.3243 -2.8699 -1.0282 50 1 5.1175 -2.4648 0.5129 51 1 3.5323 -3.2744 0.5137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021601440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:06 Heat of formation + Delta-G solvation = 48.351305 kcal Electronic energy + Delta-G solvation = -31341.372635 eV Core-core repulsion = 27435.078576 eV Total energy + Delta-G solvation = -3906.294059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.25351 -39.91811 -37.70384 -36.03248 -34.13154 -33.52021 -32.86066 -32.13557 -30.23795 -29.39959 -29.15133 -27.20686 -25.71414 -25.45183 -23.45592 -22.65699 -22.43383 -21.89255 -20.20767 -19.48320 -19.11134 -17.17616 -16.75963 -16.52884 -16.35878 -15.63180 -15.25984 -14.90644 -14.75683 -14.66254 -14.24756 -14.05379 -13.69224 -13.56841 -13.49837 -13.38312 -13.13839 -12.80022 -12.68872 -12.46899 -12.39520 -12.29284 -12.19772 -12.08760 -11.86297 -11.55841 -11.01449 -10.96610 -10.87499 -10.76493 -10.67084 -10.24943 -10.11099 -10.05060 -9.95312 -9.84451 -9.70059 -9.45139 -9.00778 -8.87979 -8.44586 -8.31036 -6.63266 -5.76825 -3.18489 0.61186 0.79286 2.75813 2.98173 3.37933 3.45887 3.48800 3.52179 3.86935 4.18157 4.39678 4.51277 4.65218 4.76608 4.80891 4.97658 5.02241 5.12131 5.17374 5.21468 5.25401 5.30703 5.33856 5.34176 5.39979 5.44616 5.51811 5.62704 5.63648 5.70076 5.76287 5.80599 5.83187 5.87610 5.94104 6.11018 6.23265 6.28498 6.37376 6.39182 6.42818 6.55170 6.63314 6.78419 6.93435 6.99619 7.16877 7.34248 7.52231 7.65919 7.70072 7.82203 8.22450 8.47362 9.23552 9.87076 10.42774 11.31363 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002905 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.001060 B = 9635.102576 C =10295.915204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.130 3.870 3 C -0.126 4.126 4 C -0.070 4.070 5 C 0.553 3.447 6 O -0.517 6.517 7 N -0.594 5.594 8 C 0.074 3.926 9 C -0.132 4.132 10 C -0.112 4.112 11 C -0.120 4.120 12 H 0.066 0.934 13 C 0.182 3.818 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.906 5.906 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.139 3.861 24 C -0.119 4.119 25 C 0.157 3.843 26 H 0.068 0.932 27 C -0.168 4.168 28 C 0.127 3.873 29 C -0.104 4.104 30 N -0.476 5.476 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.014 0.986 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.156 0.844 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 -21.133 4.434 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.081 4.081 5 C 0.340 3.660 6 O -0.394 6.394 7 N -0.326 5.326 8 C -0.048 4.048 9 C -0.171 4.171 10 C -0.151 4.151 11 C -0.141 4.141 12 H 0.085 0.915 13 C 0.055 3.945 14 N -0.317 5.317 15 C -0.376 4.376 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.012 3.988 24 C -0.159 4.159 25 C 0.056 3.944 26 H 0.086 0.914 27 C -0.188 4.188 28 C -0.011 4.011 29 C -0.161 4.161 30 N -0.187 5.187 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.174 0.826 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.159 -21.270 4.628 23.616 hybrid contribution 0.488 1.484 -0.780 1.746 sum -8.671 -19.786 3.848 21.943 Atomic orbital electron populations 1.20729 0.88299 1.03710 1.03321 1.21246 0.97174 0.87673 0.94711 1.22054 0.93170 1.00010 0.99478 1.20563 0.94574 0.94052 0.98875 1.18229 0.81102 0.87189 0.79497 1.90852 1.69136 1.34752 1.44661 1.48213 1.18162 1.12557 1.53652 1.22799 0.99500 0.88537 0.94009 1.22001 1.00560 0.99005 0.95497 1.21497 0.97866 0.94119 1.01586 1.22274 1.00844 0.97108 0.93892 0.91541 1.20792 0.90539 0.83334 0.99811 1.44139 1.66489 1.10598 1.10447 1.19276 1.05629 0.95295 1.17416 0.91637 1.25023 0.94748 0.98456 1.01636 1.70020 1.05950 1.43924 1.35209 0.86227 0.77953 0.81886 0.80779 1.20276 1.21745 1.21635 1.21128 0.95060 0.95117 0.87468 1.22519 0.97973 0.93946 1.01424 1.21413 0.93459 0.81997 0.97551 0.91447 1.22609 1.02135 0.92034 1.01999 1.21246 0.89243 0.95641 0.94943 1.20732 0.99870 0.92192 1.03318 1.67208 1.09661 1.29550 1.12325 0.90188 0.90317 0.90377 0.83784 0.91005 0.87703 0.91763 0.91093 0.91482 0.92038 0.88880 0.96340 0.93763 0.92590 0.96775 0.91646 0.90306 0.82645 0.90164 0.90496 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.00 0.37 -0.43 16 2 C 0.13 1.42 6.78 -82.63 -0.56 0.86 16 3 C -0.13 -1.53 9.33 -39.02 -0.36 -1.90 16 4 C -0.07 -0.90 5.57 -104.65 -0.58 -1.48 16 5 C 0.55 8.64 7.43 -12.19 -0.09 8.55 16 6 O -0.52 -9.65 12.40 5.35 0.07 -9.59 16 7 N -0.59 -8.78 2.96 -166.03 -0.49 -9.27 16 8 C 0.07 0.81 4.97 -3.42 -0.02 0.80 16 9 C -0.13 -1.55 6.08 -26.35 -0.16 -1.71 16 10 C -0.11 -1.67 5.24 -26.75 -0.14 -1.81 16 11 C -0.12 -2.25 2.21 -90.54 -0.20 -2.45 16 12 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.18 4.25 4.63 -3.70 -0.02 4.24 16 14 N -0.59 -15.16 3.00 -172.26 -0.52 -15.68 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 17 C 0.00 -0.02 4.94 -17.43 -0.09 -0.11 16 18 N -0.91 -26.14 11.08 55.49 0.61 -25.53 16 19 Si 0.90 21.92 29.58 -169.99 -5.03 16.89 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.14 3.09 6.50 -3.68 -0.02 3.07 16 24 C -0.12 -2.37 3.80 -26.62 -0.10 -2.47 16 25 C 0.16 2.77 2.64 -67.73 -0.18 2.59 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 C -0.17 -1.73 7.22 -39.02 -0.28 -2.02 16 28 C 0.13 1.27 6.78 -82.63 -0.56 0.71 16 29 C -0.10 -0.68 10.16 36.00 0.37 -0.31 16 30 N -0.48 -5.41 10.16 -5.79 -0.06 -5.47 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.14 1.70 8.01 -52.49 -0.42 1.28 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.99 3.56 -52.40 -0.19 0.80 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 2.45 5.98 -51.93 -0.31 2.14 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.24 7.92 -51.93 -0.41 0.83 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.43 7.33 -51.93 -0.38 1.05 16 47 H 0.08 1.55 6.25 -51.93 -0.32 1.23 16 48 H 0.16 1.29 5.31 -52.49 -0.28 1.01 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -32.31 387.08 -10.55 -42.86 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.20 Total: 0.84 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.78 Total: -0.89 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.45 Total: -55.95 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.31 -10.55 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021601440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.211 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds