Wall clock time and date at job start Wed Apr 1 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38157 * 119.55129 * 2 1 4 4 C 1.39810 * 119.00137 * 180.27438 * 3 2 1 5 5 C 1.48151 * 120.92396 * 179.72635 * 4 3 2 6 6 O 1.21517 * 119.99714 * 328.39868 * 5 4 3 7 7 N 1.34767 * 120.00356 * 148.39735 * 5 4 3 8 8 C 1.47066 * 120.84426 * 1.14684 * 7 5 4 9 9 C 1.53134 * 109.04098 * 233.41655 * 8 7 5 10 10 C 1.53147 * 109.61157 * 305.98643 * 9 8 7 11 11 C 1.52816 * 109.27464 * 60.85215 * 10 9 8 12 12 H 1.08997 * 109.47364 * 58.03273 * 11 10 9 13 13 C 1.53065 * 110.33988 * 178.57814 * 11 10 9 14 14 N 1.47068 * 108.33242 * 175.44392 * 13 11 10 15 15 C 1.36941 * 120.47139 * 126.66832 * 14 13 11 16 16 H 1.07995 * 120.00129 * 219.09051 * 15 14 13 17 17 C 1.38810 * 119.99769 * 39.08762 * 15 14 13 18 18 N 1.31620 * 120.00003 * 5.85394 * 17 15 14 19 19 Si 1.86800 * 120.00090 * 185.85254 * 17 15 14 20 20 H 1.48503 * 109.47006 * 89.99948 * 19 17 15 21 21 H 1.48500 * 109.47260 * 210.00280 * 19 17 15 22 22 H 1.48500 * 109.46862 * 330.00039 * 19 17 15 23 23 C 1.46866 * 119.06544 * 306.68741 * 14 13 11 24 24 C 1.53321 * 109.10384 * 52.63900 * 23 14 13 25 25 C 1.46715 * 120.84531 * 180.86933 * 7 5 4 26 26 H 1.09000 * 109.52334 * 245.23480 * 25 7 5 27 27 C 1.39822 * 118.15883 * 359.47079 * 4 3 2 28 28 C 1.38152 * 118.99542 * 0.55143 * 27 4 3 29 29 C 1.50703 * 119.55126 * 179.72439 * 28 27 4 30 30 N 1.31813 * 119.55473 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46751 * 89.99885 * 1 2 3 32 32 H 1.09003 * 109.46694 * 209.99716 * 1 2 3 33 33 H 1.08995 * 109.47057 * 329.99242 * 1 2 3 34 34 H 1.07997 * 120.49778 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.54431 * 353.28016 * 8 7 5 36 36 H 1.09004 * 109.54409 * 113.54691 * 8 7 5 37 37 H 1.08999 * 109.44865 * 66.02583 * 9 8 7 38 38 H 1.08998 * 109.45262 * 185.97497 * 9 8 7 39 39 H 1.09001 * 109.50238 * 180.78726 * 10 9 8 40 40 H 1.08998 * 109.50950 * 300.91085 * 10 9 8 41 41 H 1.09002 * 109.69488 * 295.14772 * 13 11 10 42 42 H 1.08998 * 109.69335 * 55.73210 * 13 11 10 43 43 H 0.97004 * 120.00213 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.53498 * 172.52333 * 23 14 13 45 45 H 1.08994 * 109.53608 * 292.67449 * 23 14 13 46 46 H 1.08998 * 109.56028 * 65.73372 * 24 23 14 47 47 H 1.08991 * 109.55699 * 185.95281 * 24 23 14 48 48 H 1.07995 * 120.50737 * 180.23698 * 27 4 3 49 49 H 1.09004 * 109.47313 * 269.98610 * 29 28 27 50 50 H 1.09001 * 109.47219 * 29.97944 * 29 28 27 51 51 H 1.08996 * 109.47204 * 149.97747 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5864 1.1884 -0.0059 5 6 4.3599 2.4520 -0.0122 6 8 3.9103 3.4368 -0.5641 7 7 5.5621 2.5093 0.5942 8 6 6.1351 1.3220 1.2461 9 6 6.5081 1.6753 2.6887 10 6 7.4206 2.9052 2.6972 11 6 6.6785 4.0882 2.0765 12 1 5.7610 4.2749 2.6346 13 6 7.5569 5.3413 2.1048 14 7 6.8467 6.4201 1.4014 15 6 6.6462 7.6309 2.0089 16 1 5.7110 8.1540 1.8749 17 6 7.6452 8.1858 2.7969 18 7 8.8251 7.6070 2.8680 19 14 7.3150 9.7542 3.7564 20 1 6.7888 9.4100 5.1017 21 1 8.5781 10.5217 3.9003 22 1 6.3154 10.5777 3.0298 23 6 6.3549 6.1804 0.0385 24 6 5.5094 4.9014 0.0277 25 6 6.3352 3.7560 0.6156 26 1 7.2536 3.6249 0.0434 27 6 4.2344 -0.0505 -0.0001 28 6 3.4740 -1.2040 -0.0006 29 6 4.1595 -2.5461 -0.0007 30 7 2.1571 -1.1466 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6492 2.1376 0.0004 35 1 5.4011 0.5162 1.2463 36 1 7.0271 1.0044 0.7062 37 1 5.6023 1.8916 3.2552 38 1 7.0295 0.8340 3.1452 39 1 7.6963 3.1467 3.7237 40 1 8.3198 2.6954 2.1180 41 1 7.7428 5.6365 3.1375 42 1 8.5036 5.1377 1.6044 43 1 9.5233 7.9949 3.4184 44 1 5.7436 7.0240 -0.2821 45 1 7.2008 6.0651 -0.6392 46 1 4.6112 5.0527 0.6263 47 1 5.2285 4.6583 -0.9969 48 1 5.3130 -0.1051 -0.0005 49 1 4.3248 -2.8696 -1.0284 50 1 5.1174 -2.4649 0.5131 51 1 3.5323 -3.2745 0.5131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021601441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:11 Heat of formation + Delta-G solvation = 44.809241 kcal Electronic energy + Delta-G solvation = -31302.736005 eV Core-core repulsion = 27396.288351 eV Total energy + Delta-G solvation = -3906.447654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24921 -39.90785 -37.68563 -36.00560 -34.12553 -33.50480 -32.84561 -32.14128 -30.20251 -29.40066 -29.19090 -27.19968 -25.70884 -25.42380 -23.44448 -22.64634 -22.42029 -21.88928 -20.19518 -19.48664 -19.10780 -17.17373 -16.72685 -16.52611 -16.36993 -15.60428 -15.24967 -14.88425 -14.75836 -14.68668 -14.26507 -14.05319 -13.69678 -13.56727 -13.48424 -13.39026 -13.11188 -12.79269 -12.68349 -12.46182 -12.39172 -12.29386 -12.19506 -12.06224 -11.85450 -11.54736 -10.97534 -10.95823 -10.87590 -10.76945 -10.73018 -10.26216 -10.11390 -10.04295 -9.96940 -9.88045 -9.69180 -9.46443 -9.00201 -8.85125 -8.44905 -8.30657 -6.44965 -5.77920 -3.32928 0.61516 0.79494 2.76070 2.98750 3.37391 3.43905 3.46156 3.52350 3.86996 4.18471 4.39935 4.49433 4.65447 4.76648 4.81389 4.98203 5.02115 5.12940 5.17530 5.21470 5.25778 5.31609 5.34043 5.34349 5.39999 5.45197 5.51985 5.63012 5.64300 5.71941 5.76419 5.80871 5.83486 5.87870 5.94495 6.11456 6.23765 6.29507 6.39026 6.39850 6.43736 6.55901 6.64243 6.80854 6.96720 7.01837 7.19117 7.32323 7.52659 7.62107 7.70232 7.83730 8.23083 8.55807 9.26104 9.84512 10.47726 11.29778 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002859 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.643714 B = 9790.818722 C =10513.929211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.130 3.870 3 C -0.127 4.127 4 C -0.070 4.070 5 C 0.553 3.447 6 O -0.517 6.517 7 N -0.594 5.594 8 C 0.074 3.926 9 C -0.133 4.133 10 C -0.113 4.113 11 C -0.121 4.121 12 H 0.066 0.934 13 C 0.188 3.812 14 N -0.592 5.592 15 C -0.256 4.256 16 H 0.060 0.940 17 C 0.012 3.988 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.140 3.860 24 C -0.120 4.120 25 C 0.157 3.843 26 H 0.069 0.931 27 C -0.168 4.168 28 C 0.127 3.873 29 C -0.104 4.104 30 N -0.476 5.476 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.156 0.844 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 -21.193 -3.966 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.081 4.081 5 C 0.340 3.660 6 O -0.394 6.394 7 N -0.326 5.326 8 C -0.048 4.048 9 C -0.171 4.171 10 C -0.151 4.151 11 C -0.142 4.142 12 H 0.084 0.916 13 C 0.061 3.939 14 N -0.315 5.315 15 C -0.387 4.387 16 H 0.078 0.922 17 C -0.188 4.188 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.013 3.987 24 C -0.159 4.159 25 C 0.056 3.944 26 H 0.087 0.913 27 C -0.188 4.188 28 C -0.011 4.011 29 C -0.161 4.161 30 N -0.188 5.188 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.173 0.827 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.154 -21.324 -4.176 23.579 hybrid contribution 0.576 1.582 0.665 1.810 sum -8.578 -19.743 -3.511 21.810 Atomic orbital electron populations 1.20728 0.88299 1.03690 1.03327 1.21247 0.97173 0.87674 0.94707 1.22053 0.93169 1.00007 0.99495 1.20569 0.94576 0.94065 0.98847 1.18227 0.81107 0.87151 0.79526 1.90853 1.69163 1.34930 1.44439 1.48214 1.18156 1.12560 1.53651 1.22694 0.99467 0.88616 0.94053 1.21921 1.00566 0.99030 0.95575 1.21507 0.97907 0.94144 1.01559 1.22383 1.00812 0.97109 0.93923 0.91557 1.20683 0.90858 0.83550 0.98796 1.43978 1.66563 1.10736 1.10211 1.19117 0.97185 0.95988 1.26362 0.92248 1.25370 0.94731 0.97635 1.01020 1.69950 1.02740 1.40429 1.41456 0.86306 0.77121 0.83432 0.79978 1.21384 1.21608 1.20295 1.21147 0.94989 0.94912 0.87640 1.22528 0.97877 0.93994 1.01488 1.21517 0.93483 0.81898 0.97496 0.91330 1.22600 1.02123 0.92030 1.02011 1.21245 0.89246 0.95637 0.94947 1.20730 0.99852 0.92198 1.03306 1.67209 1.09657 1.29550 1.12335 0.90180 0.90323 0.90395 0.83787 0.87721 0.91043 0.91790 0.91070 0.91532 0.92030 0.90185 0.96131 0.93608 0.92602 0.96798 0.91725 0.90313 0.82656 0.90218 0.90474 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.00 0.37 -0.43 16 2 C 0.13 1.42 6.78 -82.63 -0.56 0.86 16 3 C -0.13 -1.54 9.34 -39.02 -0.36 -1.90 16 4 C -0.07 -0.90 5.57 -104.65 -0.58 -1.48 16 5 C 0.55 8.65 7.43 -12.19 -0.09 8.56 16 6 O -0.52 -9.67 12.41 5.35 0.07 -9.60 16 7 N -0.59 -8.78 2.96 -166.02 -0.49 -9.28 16 8 C 0.07 0.81 4.94 -3.66 -0.02 0.80 16 9 C -0.13 -1.54 6.07 -26.59 -0.16 -1.70 16 10 C -0.11 -1.66 5.23 -26.75 -0.14 -1.80 16 11 C -0.12 -2.26 2.21 -90.31 -0.20 -2.46 16 12 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 13 C 0.19 4.38 4.53 -3.70 -0.02 4.37 16 14 N -0.59 -15.15 2.95 -172.25 -0.51 -15.66 16 15 C -0.26 -7.17 9.48 -15.06 -0.14 -7.32 16 16 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 17 C 0.01 0.33 5.11 -17.43 -0.09 0.24 16 18 N -0.90 -26.09 11.39 55.49 0.63 -25.46 16 19 Si 0.90 21.85 29.56 -169.99 -5.02 16.82 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.14 3.14 6.50 -3.68 -0.02 3.12 16 24 C -0.12 -2.38 3.80 -26.59 -0.10 -2.48 16 25 C 0.16 2.78 2.67 -67.47 -0.18 2.59 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 C -0.17 -1.73 7.21 -39.02 -0.28 -2.02 16 28 C 0.13 1.27 6.78 -82.63 -0.56 0.71 16 29 C -0.10 -0.67 10.17 36.01 0.37 -0.31 16 30 N -0.48 -5.41 10.16 -5.79 -0.06 -5.47 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.14 1.70 8.02 -52.49 -0.42 1.28 16 35 H 0.11 0.99 3.55 -52.39 -0.19 0.80 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 2.09 6.59 -51.93 -0.34 1.75 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.41 7.35 -51.93 -0.38 1.03 16 47 H 0.08 1.56 6.23 -51.93 -0.32 1.24 16 48 H 0.16 1.29 5.33 -52.49 -0.28 1.01 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 51 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -32.33 387.86 -10.55 -42.88 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.23 Total: 0.58 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.78 Total: -0.65 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.43 Total: -55.87 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.33 -10.55 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021601441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.686 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds