Wall clock time and date at job start Wed Apr 1 2020 01:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38157 * 119.55129 * 2 1 4 4 C 1.39810 * 119.00137 * 180.27438 * 3 2 1 5 5 C 1.48151 * 120.92396 * 179.72635 * 4 3 2 6 6 O 1.21517 * 119.99714 * 328.39868 * 5 4 3 7 7 N 1.34767 * 120.00356 * 148.39735 * 5 4 3 8 8 C 1.47066 * 120.84426 * 1.14684 * 7 5 4 9 9 C 1.53134 * 109.04098 * 233.41655 * 8 7 5 10 10 C 1.53147 * 109.61157 * 305.98643 * 9 8 7 11 11 C 1.52816 * 109.27464 * 60.85215 * 10 9 8 12 12 H 1.08997 * 109.47364 * 58.03273 * 11 10 9 13 13 C 1.53065 * 110.33988 * 178.57814 * 11 10 9 14 14 N 1.47068 * 108.33242 * 175.44392 * 13 11 10 15 15 C 1.36941 * 120.47139 * 126.66832 * 14 13 11 16 16 H 1.07995 * 120.00129 * 219.09051 * 15 14 13 17 17 C 1.38810 * 119.99769 * 39.08762 * 15 14 13 18 18 N 1.31620 * 120.00003 * 5.85394 * 17 15 14 19 19 Si 1.86800 * 120.00090 * 185.85254 * 17 15 14 20 20 H 1.48503 * 109.47006 * 89.99948 * 19 17 15 21 21 H 1.48500 * 109.47260 * 210.00280 * 19 17 15 22 22 H 1.48500 * 109.46862 * 330.00039 * 19 17 15 23 23 C 1.46866 * 119.06544 * 306.68741 * 14 13 11 24 24 C 1.53321 * 109.10384 * 52.63900 * 23 14 13 25 25 C 1.46715 * 120.84531 * 180.86933 * 7 5 4 26 26 H 1.09000 * 109.52334 * 245.23480 * 25 7 5 27 27 C 1.39822 * 118.15883 * 359.47079 * 4 3 2 28 28 C 1.38152 * 118.99542 * 0.55143 * 27 4 3 29 29 C 1.50703 * 119.55126 * 179.72439 * 28 27 4 30 30 N 1.31813 * 119.55473 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46751 * 89.99885 * 1 2 3 32 32 H 1.09003 * 109.46694 * 209.99716 * 1 2 3 33 33 H 1.08995 * 109.47057 * 329.99242 * 1 2 3 34 34 H 1.07997 * 120.49778 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.54431 * 353.28016 * 8 7 5 36 36 H 1.09004 * 109.54409 * 113.54691 * 8 7 5 37 37 H 1.08999 * 109.44865 * 66.02583 * 9 8 7 38 38 H 1.08998 * 109.45262 * 185.97497 * 9 8 7 39 39 H 1.09001 * 109.50238 * 180.78726 * 10 9 8 40 40 H 1.08998 * 109.50950 * 300.91085 * 10 9 8 41 41 H 1.09002 * 109.69488 * 295.14772 * 13 11 10 42 42 H 1.08998 * 109.69335 * 55.73210 * 13 11 10 43 43 H 0.97004 * 120.00213 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.53498 * 172.52333 * 23 14 13 45 45 H 1.08994 * 109.53608 * 292.67449 * 23 14 13 46 46 H 1.08998 * 109.56028 * 65.73372 * 24 23 14 47 47 H 1.08991 * 109.55699 * 185.95281 * 24 23 14 48 48 H 1.07995 * 120.50737 * 180.23698 * 27 4 3 49 49 H 1.09004 * 109.47313 * 269.98610 * 29 28 27 50 50 H 1.09001 * 109.47219 * 29.97944 * 29 28 27 51 51 H 1.08996 * 109.47204 * 149.97747 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5864 1.1884 -0.0059 5 6 4.3599 2.4520 -0.0122 6 8 3.9103 3.4368 -0.5641 7 7 5.5621 2.5093 0.5942 8 6 6.1351 1.3220 1.2461 9 6 6.5081 1.6753 2.6887 10 6 7.4206 2.9052 2.6972 11 6 6.6785 4.0882 2.0765 12 1 5.7610 4.2749 2.6346 13 6 7.5569 5.3413 2.1048 14 7 6.8467 6.4201 1.4014 15 6 6.6462 7.6309 2.0089 16 1 5.7110 8.1540 1.8749 17 6 7.6452 8.1858 2.7969 18 7 8.8251 7.6070 2.8680 19 14 7.3150 9.7542 3.7564 20 1 6.7888 9.4100 5.1017 21 1 8.5781 10.5217 3.9003 22 1 6.3154 10.5777 3.0298 23 6 6.3549 6.1804 0.0385 24 6 5.5094 4.9014 0.0277 25 6 6.3352 3.7560 0.6156 26 1 7.2536 3.6249 0.0434 27 6 4.2344 -0.0505 -0.0001 28 6 3.4740 -1.2040 -0.0006 29 6 4.1595 -2.5461 -0.0007 30 7 2.1571 -1.1466 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6492 2.1376 0.0004 35 1 5.4011 0.5162 1.2463 36 1 7.0271 1.0044 0.7062 37 1 5.6023 1.8916 3.2552 38 1 7.0295 0.8340 3.1452 39 1 7.6963 3.1467 3.7237 40 1 8.3198 2.6954 2.1180 41 1 7.7428 5.6365 3.1375 42 1 8.5036 5.1377 1.6044 43 1 9.5233 7.9949 3.4184 44 1 5.7436 7.0240 -0.2821 45 1 7.2008 6.0651 -0.6392 46 1 4.6112 5.0527 0.6263 47 1 5.2285 4.6583 -0.9969 48 1 5.3130 -0.1051 -0.0005 49 1 4.3248 -2.8696 -1.0284 50 1 5.1174 -2.4649 0.5131 51 1 3.5323 -3.2745 0.5131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021601441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:10 Heat of formation + Delta-G solvation = 26.163914 kcal Electronic energy + Delta-G solvation = -31303.544527 eV Core-core repulsion = 27396.288351 eV Total energy + Delta-G solvation = -3907.256176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30778 -40.98266 -39.10622 -37.50365 -35.14234 -34.63109 -34.22799 -33.58873 -31.80489 -30.87499 -29.99453 -28.04016 -27.17965 -26.87937 -24.81977 -23.97978 -23.79630 -22.85993 -21.49525 -21.19512 -20.25633 -18.72499 -18.14919 -17.60862 -17.26160 -17.02244 -16.62119 -16.39334 -15.80681 -15.73370 -15.54517 -15.30970 -15.23920 -15.07029 -14.52987 -14.34974 -14.10165 -14.05736 -13.96608 -13.61637 -13.54136 -13.24671 -13.20647 -12.91705 -12.85508 -12.82733 -12.78401 -12.72684 -12.56682 -12.18230 -12.07456 -12.04907 -11.75388 -11.66305 -11.50209 -11.12768 -10.83761 -10.77808 -10.58714 -10.16585 -9.74315 -9.60872 -8.52654 -7.90851 -5.51132 -0.30466 -0.00455 1.42949 1.43314 1.53374 1.61766 1.85526 2.46034 2.65929 3.17183 3.20542 3.24341 3.60072 3.65167 3.78584 3.86175 3.89268 3.92046 3.96383 4.07739 4.24913 4.28948 4.35137 4.43060 4.45566 4.55463 4.57648 4.63749 4.72358 4.75097 4.75404 4.81432 4.84642 4.86900 4.90290 4.97521 5.00919 5.04248 5.09724 5.15034 5.15109 5.25863 5.26525 5.35646 5.40284 5.47410 5.56788 5.62413 5.65131 5.71826 6.33430 6.42229 6.91147 7.01873 7.14456 7.79025 8.36782 9.13309 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002859 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.643714 B = 9790.818722 C =10513.929211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.127 3.873 3 C -0.144 4.144 4 C -0.084 4.084 5 C 0.548 3.452 6 O -0.559 6.559 7 N -0.592 5.592 8 C 0.068 3.932 9 C -0.125 4.125 10 C -0.110 4.110 11 C -0.107 4.107 12 H 0.040 0.960 13 C 0.198 3.802 14 N -0.612 5.612 15 C -0.276 4.276 16 H 0.051 0.949 17 C -0.035 4.035 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.139 3.861 24 C -0.099 4.099 25 C 0.165 3.835 26 H 0.076 0.924 27 C -0.162 4.162 28 C 0.127 3.873 29 C -0.103 4.103 30 N -0.490 5.490 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.006 0.994 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.038 0.962 47 H 0.081 0.919 48 H 0.182 0.818 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -24.434 -3.764 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.011 4.011 3 C -0.165 4.165 4 C -0.095 4.095 5 C 0.337 3.663 6 O -0.439 6.439 7 N -0.323 5.323 8 C -0.052 4.052 9 C -0.163 4.163 10 C -0.148 4.148 11 C -0.129 4.129 12 H 0.058 0.942 13 C 0.072 3.928 14 N -0.336 5.336 15 C -0.407 4.407 16 H 0.069 0.931 17 C -0.232 4.232 18 N -0.571 5.571 19 Si 0.795 3.205 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 C 0.013 3.987 24 C -0.139 4.139 25 C 0.062 3.938 26 H 0.094 0.906 27 C -0.182 4.182 28 C -0.011 4.011 29 C -0.160 4.160 30 N -0.202 5.202 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.199 0.801 49 H 0.109 0.891 50 H 0.121 0.879 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.983 -24.611 -3.970 26.499 hybrid contribution 0.497 2.560 0.568 2.669 sum -8.486 -22.051 -3.401 23.871 Atomic orbital electron populations 1.20806 0.86428 1.04484 1.04194 1.21622 0.98509 0.87101 0.93829 1.22110 0.93258 1.00397 1.00725 1.20378 0.94631 0.93590 1.00870 1.18686 0.81083 0.87769 0.78739 1.90815 1.70037 1.36743 1.46306 1.48199 1.17841 1.12567 1.53704 1.23083 1.01119 0.87392 0.93581 1.21899 0.99611 0.98557 0.96200 1.21486 0.98574 0.93767 1.00940 1.22101 0.99035 0.96783 0.94943 0.94155 1.20479 0.91089 0.85017 0.96233 1.44247 1.66925 1.10911 1.11483 1.19338 0.97141 0.97149 1.27040 0.93143 1.26075 0.94504 1.00614 1.01992 1.70091 1.03375 1.41611 1.42070 0.85291 0.76990 0.79678 0.78578 1.20843 1.21320 1.19718 1.21213 0.95094 0.96070 0.86355 1.22245 0.96433 0.93811 1.01374 1.21190 0.93573 0.82701 0.96312 0.90628 1.22813 1.03341 0.90854 1.01149 1.21876 0.88923 0.97073 0.93181 1.20872 1.00683 0.89994 1.04433 1.67337 1.10605 1.29499 1.12753 0.89178 0.89619 0.89497 0.84595 0.85469 0.88078 0.93004 0.87046 0.92058 0.90790 0.93530 0.97604 0.93758 0.93646 0.96661 0.94287 0.90036 0.80091 0.89063 0.87868 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.17 71.24 0.72 -0.72 16 2 C 0.13 2.61 6.78 42.54 0.29 2.89 16 3 C -0.14 -3.45 9.34 22.63 0.21 -3.24 16 4 C -0.08 -2.05 5.57 -19.88 -0.11 -2.17 16 5 C 0.55 16.96 7.43 86.88 0.65 17.60 16 6 O -0.56 -21.55 12.41 -3.77 -0.05 -21.60 16 7 N -0.59 -16.69 2.96 -797.46 -2.36 -19.06 16 8 C 0.07 1.25 4.94 86.32 0.43 1.67 16 9 C -0.12 -2.47 6.07 30.69 0.19 -2.29 16 10 C -0.11 -3.05 5.23 30.58 0.16 -2.89 16 11 C -0.11 -4.07 2.21 -10.59 -0.02 -4.10 16 12 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.20 9.62 4.53 86.29 0.39 10.01 16 14 N -0.61 -32.76 2.95 -698.89 -2.06 -34.83 16 15 C -0.28 -16.09 9.48 84.03 0.80 -15.29 16 16 H 0.05 2.96 7.83 -2.91 -0.02 2.94 16 17 C -0.03 -2.00 5.11 84.86 0.43 -1.57 16 18 N -0.93 -55.09 11.39 21.65 0.25 -54.85 16 19 Si 0.97 45.87 29.56 68.60 2.03 47.90 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.14 6.52 6.50 86.42 0.56 7.08 16 24 C -0.10 -4.11 3.80 30.68 0.12 -4.00 16 25 C 0.16 5.80 2.67 45.17 0.12 5.92 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 C -0.16 -2.83 7.21 22.63 0.16 -2.67 16 28 C 0.13 2.13 6.78 42.54 0.29 2.41 16 29 C -0.10 -0.90 10.17 71.24 0.72 -0.17 16 30 N -0.49 -10.03 10.16 -172.22 -1.75 -11.78 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.14 3.35 8.02 -2.91 -0.02 3.33 16 35 H 0.13 1.82 3.55 -2.82 -0.01 1.81 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 2.55 6.59 -2.39 -0.02 2.53 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 44 H 0.04 2.17 7.93 -2.39 -0.02 2.15 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.04 1.80 7.35 -2.39 -0.02 1.78 16 47 H 0.08 3.34 6.23 -2.39 -0.01 3.33 16 48 H 0.18 2.12 5.33 -2.91 -0.02 2.10 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.10 0.39 8.08 -2.39 -0.02 0.37 16 51 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -74.38 387.86 3.08 -71.31 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.92 Total: 14.41 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.10 Total: 8.50 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -5.93 Total: -120.51 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.38 3.08 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021601441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.473 kcal (2) G-P(sol) polarization free energy of solvation -74.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds