Wall clock time and date at job start Wed Apr 1 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38150 * 119.55481 * 2 1 4 4 C 1.39813 * 119.00219 * 179.97438 * 3 2 1 5 5 C 1.48153 * 120.91954 * 179.97438 * 4 3 2 6 6 O 1.21514 * 120.00101 * 32.64938 * 5 4 3 7 7 N 1.34769 * 119.99971 * 212.64395 * 5 4 3 8 8 C 1.46949 * 120.84659 * 5.53932 * 7 5 4 9 9 C 1.53143 * 109.02450 * 125.94866 * 8 7 5 10 10 C 1.53119 * 109.47289 * 54.08099 * 9 8 7 11 11 C 1.52850 * 109.34919 * 299.34665 * 10 9 8 12 12 H 1.09001 * 109.25582 * 303.28231 * 11 10 9 13 13 C 1.52777 * 110.20686 * 183.23544 * 11 10 9 14 14 N 1.46892 * 109.19392 * 292.63998 * 13 11 10 15 15 C 1.36936 * 120.77097 * 126.63743 * 14 13 11 16 16 H 1.08004 * 119.99776 * 214.18742 * 15 14 13 17 17 C 1.38812 * 120.00580 * 34.19034 * 15 14 13 18 18 N 1.31621 * 119.99789 * 17.75247 * 17 15 14 19 19 Si 1.86790 * 120.00253 * 197.75720 * 17 15 14 20 20 H 1.48506 * 109.47245 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47155 * 119.99629 * 19 17 15 22 22 H 1.48496 * 109.47301 * 240.00148 * 19 17 15 23 23 C 1.46975 * 118.45091 * 306.65110 * 14 13 11 24 24 C 1.53090 * 108.61490 * 54.32447 * 23 14 13 25 25 C 1.47310 * 120.84571 * 185.25658 * 7 5 4 26 26 H 1.08996 * 110.06836 * 355.09749 * 25 7 5 27 27 C 1.39805 * 118.15766 * 359.97438 * 4 3 2 28 28 C 1.38148 * 119.00388 * 359.97438 * 27 4 3 29 29 C 1.50698 * 119.55851 * 179.97438 * 28 27 4 30 30 N 1.31811 * 119.55094 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47122 * 90.00129 * 1 2 3 32 32 H 1.08997 * 109.47425 * 210.00329 * 1 2 3 33 33 H 1.08998 * 109.47108 * 330.00150 * 1 2 3 34 34 H 1.08003 * 120.49551 * 0.25121 * 3 2 1 35 35 H 1.09003 * 109.54435 * 245.81806 * 8 7 5 36 36 H 1.09001 * 109.54484 * 6.08489 * 8 7 5 37 37 H 1.08999 * 109.46583 * 174.07847 * 9 8 7 38 38 H 1.08997 * 109.46866 * 294.08065 * 9 8 7 39 39 H 1.08998 * 109.49021 * 59.31613 * 10 9 8 40 40 H 1.09007 * 109.48350 * 179.38680 * 10 9 8 41 41 H 1.09004 * 109.51398 * 52.55431 * 13 11 10 42 42 H 1.09000 * 109.51313 * 172.72146 * 13 11 10 43 43 H 0.96996 * 119.99869 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.60898 * 174.05987 * 23 14 13 45 45 H 1.08996 * 109.61495 * 294.40881 * 23 14 13 46 46 H 1.08994 * 109.45399 * 64.68884 * 24 23 14 47 47 H 1.09001 * 109.45353 * 184.63816 * 24 23 14 48 48 H 1.08003 * 120.50578 * 180.02562 * 27 4 3 49 49 H 1.09003 * 109.47289 * 89.99853 * 29 28 27 50 50 H 1.09003 * 109.47427 * 210.00375 * 29 28 27 51 51 H 1.09002 * 109.46898 * 330.00612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2017 0.0000 4 6 3.5865 1.1883 0.0005 5 6 4.3600 2.4518 0.0000 6 8 3.9213 3.4330 0.5669 7 7 5.5502 2.5130 -0.6292 8 6 6.0430 1.3777 -1.4214 9 6 6.3887 1.8655 -2.8313 10 6 7.3614 3.0444 -2.7394 11 6 6.7020 4.1859 -1.9657 12 1 5.7668 4.4584 -2.4547 13 6 7.6255 5.4025 -1.9311 14 7 8.8085 5.0879 -1.1192 15 6 10.0701 5.2665 -1.6208 16 1 10.8645 4.5921 -1.3371 17 6 10.3281 6.3144 -2.4939 18 7 9.4900 7.3262 -2.5735 19 14 11.8645 6.2886 -3.5559 20 1 12.6359 5.0498 -3.2805 21 1 11.4764 6.3210 -4.9889 22 1 12.7026 7.4739 -3.2430 23 6 8.6065 4.5768 0.2439 24 6 7.6927 3.3504 0.1755 25 6 6.3876 3.7221 -0.5452 26 1 5.8579 4.5072 -0.0058 27 6 4.2343 -0.0506 0.0016 28 6 3.4740 -1.2041 0.0026 29 6 4.1594 -2.5462 0.0032 30 7 2.1571 -1.1466 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6493 2.1375 0.0041 35 1 6.9342 0.9636 -0.9500 36 1 5.2702 0.6112 -1.4800 37 1 6.8527 1.0545 -3.3926 38 1 5.4783 2.1843 -3.3388 39 1 8.2670 2.7291 -2.2211 40 1 7.6161 3.3848 -3.7432 41 1 7.9360 5.6529 -2.9456 42 1 7.0968 6.2485 -1.4920 43 1 9.6705 8.0585 -3.1833 44 1 9.5669 4.2938 0.6745 45 1 8.1427 5.3479 0.8589 46 1 8.1950 2.5536 -0.3729 47 1 7.4669 3.0091 1.1857 48 1 5.3130 -0.1053 0.0025 49 1 4.3250 -2.8692 1.0310 50 1 3.5318 -3.2749 -0.5100 51 1 5.1171 -2.4653 -0.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021601442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:15 Heat of formation + Delta-G solvation = 24.046582 kcal Electronic energy + Delta-G solvation = -31301.713770 eV Core-core repulsion = 27394.365780 eV Total energy + Delta-G solvation = -3907.347990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.18662 -39.91872 -38.04277 -35.71770 -34.09074 -33.42580 -32.62273 -32.19226 -30.30731 -29.50760 -29.38463 -27.14249 -25.69042 -25.52275 -23.66502 -22.57560 -22.03190 -21.97944 -21.31063 -19.35326 -17.97568 -17.44114 -16.86209 -16.52084 -16.27953 -15.70378 -15.22666 -15.02433 -14.77976 -14.63175 -14.34198 -13.92087 -13.67176 -13.57775 -13.54140 -13.41303 -13.07945 -12.89809 -12.70180 -12.57961 -12.44399 -12.36375 -12.28792 -12.15697 -11.89301 -11.58062 -11.21103 -10.99862 -10.79599 -10.66325 -10.51938 -10.30015 -10.14363 -10.09660 -10.07317 -9.93486 -9.75473 -9.56184 -9.38112 -8.99673 -8.53176 -8.36826 -6.62981 -5.83651 -3.31126 0.59798 0.78613 2.72524 2.95108 3.33201 3.41989 3.43569 3.49882 3.86241 4.18633 4.38815 4.45569 4.66670 4.75898 4.86774 5.01580 5.07349 5.16344 5.17837 5.20927 5.26555 5.31495 5.32682 5.34214 5.39413 5.43856 5.46426 5.59153 5.63623 5.69850 5.75600 5.80277 5.82558 5.83177 6.01372 6.03075 6.15515 6.27748 6.35358 6.37529 6.40737 6.46216 6.63222 6.74441 6.83777 6.91557 6.97596 7.22145 7.43884 7.53944 7.69027 7.78648 8.13207 8.44003 9.16785 9.78729 10.40734 11.24562 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002739 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.271684 B =10218.662353 C =10619.575092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.129 3.871 3 C -0.128 4.128 4 C -0.069 4.069 5 C 0.554 3.446 6 O -0.533 6.533 7 N -0.594 5.594 8 C 0.089 3.911 9 C -0.135 4.135 10 C -0.104 4.104 11 C -0.115 4.115 12 H 0.056 0.944 13 C 0.183 3.817 14 N -0.586 5.586 15 C -0.257 4.257 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.147 3.853 24 C -0.140 4.140 25 C 0.154 3.846 26 H 0.096 0.904 27 C -0.156 4.156 28 C 0.127 3.873 29 C -0.104 4.104 30 N -0.475 5.475 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.254 0.746 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.149 0.851 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 -18.153 2.600 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.148 4.148 4 C -0.080 4.080 5 C 0.342 3.658 6 O -0.410 6.410 7 N -0.325 5.325 8 C -0.033 4.033 9 C -0.173 4.173 10 C -0.142 4.142 11 C -0.136 4.136 12 H 0.075 0.925 13 C 0.056 3.944 14 N -0.308 5.308 15 C -0.387 4.387 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.020 3.980 24 C -0.180 4.180 25 C 0.053 3.947 26 H 0.114 0.886 27 C -0.176 4.176 28 C -0.010 4.010 29 C -0.161 4.161 30 N -0.186 5.186 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.166 0.834 49 H 0.098 0.902 50 H 0.097 0.903 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.678 -18.221 2.800 22.955 hybrid contribution 1.271 0.933 -0.673 1.714 sum -12.407 -17.289 2.127 21.386 Atomic orbital electron populations 1.20725 0.88294 1.03704 1.03300 1.21239 0.97169 0.87661 0.94830 1.22046 0.93143 0.99989 0.99652 1.20430 0.94459 0.93896 0.99226 1.18217 0.80950 0.87165 0.79516 1.90782 1.68751 1.36344 1.45172 1.48446 1.18290 1.17361 1.48425 1.22300 0.99953 0.88845 0.92198 1.21984 1.00410 0.99521 0.95425 1.21448 0.98150 0.93807 1.00750 1.21949 0.99401 0.98574 0.93697 0.92549 1.20574 0.85935 0.90288 0.97555 1.43954 1.02308 1.76003 1.08578 1.19079 0.87122 1.07573 1.24902 0.91986 1.25184 0.97533 0.94502 1.01716 1.70058 1.37885 1.07875 1.38002 0.86317 0.82995 0.77531 0.80451 1.20159 1.21541 1.21681 1.20872 0.96484 0.92274 0.88379 1.22496 0.95849 1.00989 0.98665 1.21464 0.90059 0.85458 0.97710 0.88551 1.22412 1.01960 0.91857 1.01363 1.21238 0.89193 0.95657 0.94951 1.20733 0.99893 0.92124 1.03342 1.67217 1.09654 1.29522 1.12245 0.90203 0.90300 0.90414 0.83868 0.90913 0.89179 0.91116 0.92166 0.90393 0.91963 0.90315 0.95959 0.93627 0.92397 0.96203 0.91564 0.93087 0.83392 0.90202 0.90285 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 2 C 0.13 1.38 6.78 -82.63 -0.56 0.82 16 3 C -0.13 -1.52 9.34 -39.02 -0.36 -1.89 16 4 C -0.07 -0.89 5.41 -104.65 -0.57 -1.46 16 5 C 0.55 8.72 7.47 -12.19 -0.09 8.63 16 6 O -0.53 -10.24 16.31 5.35 0.09 -10.15 16 7 N -0.59 -8.80 2.66 -165.84 -0.44 -9.25 16 8 C 0.09 1.05 4.32 -3.72 -0.02 1.04 16 9 C -0.14 -1.70 6.08 -26.60 -0.16 -1.86 16 10 C -0.10 -1.69 4.86 -26.75 -0.13 -1.82 16 11 C -0.12 -2.11 2.43 -90.96 -0.22 -2.33 16 12 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.18 4.18 4.68 -3.94 -0.02 4.16 16 14 N -0.59 -13.92 2.60 -172.62 -0.45 -14.37 16 15 C -0.26 -6.73 9.51 -15.06 -0.14 -6.88 16 16 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 17 C 0.01 0.29 4.85 -17.43 -0.08 0.20 16 18 N -0.90 -25.50 11.74 55.49 0.65 -24.85 16 19 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.15 3.00 6.52 -3.74 -0.02 2.98 16 24 C -0.14 -2.38 5.03 -26.35 -0.13 -2.51 16 25 C 0.15 2.68 2.67 -67.31 -0.18 2.50 16 26 H 0.10 1.90 7.05 -51.93 -0.37 1.54 16 27 C -0.16 -1.65 7.12 -39.03 -0.28 -1.93 16 28 C 0.13 1.29 6.78 -82.63 -0.56 0.73 16 29 C -0.10 -0.71 10.17 36.00 0.37 -0.34 16 30 N -0.47 -5.38 10.16 -5.79 -0.06 -5.44 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.14 1.63 8.03 -52.48 -0.42 1.21 16 35 H 0.07 0.79 7.19 -51.93 -0.37 0.41 16 36 H 0.09 0.91 4.26 -51.93 -0.22 0.69 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.37 6.16 -51.93 -0.32 1.05 16 40 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.08 1.99 6.58 -51.93 -0.34 1.65 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.09 5.32 -51.93 -0.28 0.81 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.15 1.33 5.86 -52.48 -0.31 1.02 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -31.25 388.83 -10.26 -41.51 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.08 Total: 1.01 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.80 Total: -0.35 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.30 Total: -53.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.25 -10.26 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021601442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.557 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds