Wall clock time and date at job start Wed Apr 1 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38150 * 119.55481 * 2 1 4 4 C 1.39813 * 119.00219 * 179.97438 * 3 2 1 5 5 C 1.48153 * 120.91954 * 179.97438 * 4 3 2 6 6 O 1.21514 * 120.00101 * 32.64938 * 5 4 3 7 7 N 1.34769 * 119.99971 * 212.64395 * 5 4 3 8 8 C 1.46949 * 120.84659 * 5.53932 * 7 5 4 9 9 C 1.53143 * 109.02450 * 125.94866 * 8 7 5 10 10 C 1.53119 * 109.47289 * 54.08099 * 9 8 7 11 11 C 1.52850 * 109.34919 * 299.34665 * 10 9 8 12 12 H 1.09001 * 109.25582 * 303.28231 * 11 10 9 13 13 C 1.52777 * 110.20686 * 183.23544 * 11 10 9 14 14 N 1.46892 * 109.19392 * 292.63998 * 13 11 10 15 15 C 1.36936 * 120.77097 * 126.63743 * 14 13 11 16 16 H 1.08004 * 119.99776 * 214.18742 * 15 14 13 17 17 C 1.38812 * 120.00580 * 34.19034 * 15 14 13 18 18 N 1.31621 * 119.99789 * 17.75247 * 17 15 14 19 19 Si 1.86790 * 120.00253 * 197.75720 * 17 15 14 20 20 H 1.48506 * 109.47245 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47155 * 119.99629 * 19 17 15 22 22 H 1.48496 * 109.47301 * 240.00148 * 19 17 15 23 23 C 1.46975 * 118.45091 * 306.65110 * 14 13 11 24 24 C 1.53090 * 108.61490 * 54.32447 * 23 14 13 25 25 C 1.47310 * 120.84571 * 185.25658 * 7 5 4 26 26 H 1.08996 * 110.06836 * 355.09749 * 25 7 5 27 27 C 1.39805 * 118.15766 * 359.97438 * 4 3 2 28 28 C 1.38148 * 119.00388 * 359.97438 * 27 4 3 29 29 C 1.50698 * 119.55851 * 179.97438 * 28 27 4 30 30 N 1.31811 * 119.55094 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47122 * 90.00129 * 1 2 3 32 32 H 1.08997 * 109.47425 * 210.00329 * 1 2 3 33 33 H 1.08998 * 109.47108 * 330.00150 * 1 2 3 34 34 H 1.08003 * 120.49551 * 0.25121 * 3 2 1 35 35 H 1.09003 * 109.54435 * 245.81806 * 8 7 5 36 36 H 1.09001 * 109.54484 * 6.08489 * 8 7 5 37 37 H 1.08999 * 109.46583 * 174.07847 * 9 8 7 38 38 H 1.08997 * 109.46866 * 294.08065 * 9 8 7 39 39 H 1.08998 * 109.49021 * 59.31613 * 10 9 8 40 40 H 1.09007 * 109.48350 * 179.38680 * 10 9 8 41 41 H 1.09004 * 109.51398 * 52.55431 * 13 11 10 42 42 H 1.09000 * 109.51313 * 172.72146 * 13 11 10 43 43 H 0.96996 * 119.99869 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.60898 * 174.05987 * 23 14 13 45 45 H 1.08996 * 109.61495 * 294.40881 * 23 14 13 46 46 H 1.08994 * 109.45399 * 64.68884 * 24 23 14 47 47 H 1.09001 * 109.45353 * 184.63816 * 24 23 14 48 48 H 1.08003 * 120.50578 * 180.02562 * 27 4 3 49 49 H 1.09003 * 109.47289 * 89.99853 * 29 28 27 50 50 H 1.09003 * 109.47427 * 210.00375 * 29 28 27 51 51 H 1.09002 * 109.46898 * 330.00612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2017 0.0000 4 6 3.5865 1.1883 0.0005 5 6 4.3600 2.4518 0.0000 6 8 3.9213 3.4330 0.5669 7 7 5.5502 2.5130 -0.6292 8 6 6.0430 1.3777 -1.4214 9 6 6.3887 1.8655 -2.8313 10 6 7.3614 3.0444 -2.7394 11 6 6.7020 4.1859 -1.9657 12 1 5.7668 4.4584 -2.4547 13 6 7.6255 5.4025 -1.9311 14 7 8.8085 5.0879 -1.1192 15 6 10.0701 5.2665 -1.6208 16 1 10.8645 4.5921 -1.3371 17 6 10.3281 6.3144 -2.4939 18 7 9.4900 7.3262 -2.5735 19 14 11.8645 6.2886 -3.5559 20 1 12.6359 5.0498 -3.2805 21 1 11.4764 6.3210 -4.9889 22 1 12.7026 7.4739 -3.2430 23 6 8.6065 4.5768 0.2439 24 6 7.6927 3.3504 0.1755 25 6 6.3876 3.7221 -0.5452 26 1 5.8579 4.5072 -0.0058 27 6 4.2343 -0.0506 0.0016 28 6 3.4740 -1.2041 0.0026 29 6 4.1594 -2.5462 0.0032 30 7 2.1571 -1.1466 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6493 2.1375 0.0041 35 1 6.9342 0.9636 -0.9500 36 1 5.2702 0.6112 -1.4800 37 1 6.8527 1.0545 -3.3926 38 1 5.4783 2.1843 -3.3388 39 1 8.2670 2.7291 -2.2211 40 1 7.6161 3.3848 -3.7432 41 1 7.9360 5.6529 -2.9456 42 1 7.0968 6.2485 -1.4920 43 1 9.6705 8.0585 -3.1833 44 1 9.5669 4.2938 0.6745 45 1 8.1427 5.3479 0.8589 46 1 8.1950 2.5536 -0.3729 47 1 7.4669 3.0091 1.1857 48 1 5.3130 -0.1053 0.0025 49 1 4.3250 -2.8692 1.0310 50 1 3.5318 -3.2749 -0.5100 51 1 5.1171 -2.4653 -0.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021601442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:14 Heat of formation + Delta-G solvation = 6.713779 kcal Electronic energy + Delta-G solvation = -31302.465377 eV Core-core repulsion = 27394.365780 eV Total energy + Delta-G solvation = -3908.099597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.23791 -41.02148 -39.43056 -37.21976 -35.01213 -34.54030 -34.05799 -33.56516 -31.83237 -31.14986 -29.99400 -27.96531 -27.21286 -26.89548 -25.02497 -23.80176 -23.49549 -22.88057 -22.77080 -20.58231 -19.51366 -18.60711 -18.38002 -17.57353 -17.24203 -17.03775 -16.76521 -16.20911 -15.99325 -15.77642 -15.59334 -15.25152 -15.05812 -15.02367 -14.54018 -14.31725 -14.24573 -14.09792 -14.05838 -13.71685 -13.60150 -13.26574 -13.21422 -12.96078 -12.91671 -12.83071 -12.74592 -12.64492 -12.48842 -12.19114 -12.04079 -11.84575 -11.79937 -11.52551 -11.43332 -11.32847 -11.04737 -10.85681 -10.55635 -10.43289 -9.76988 -9.67270 -8.62421 -7.88016 -5.39159 -0.32463 -0.00581 1.46162 1.48947 1.58448 1.59131 1.78092 2.50950 2.64566 3.16474 3.19926 3.27804 3.60523 3.64502 3.74646 3.84059 3.91408 3.94150 3.95586 4.05799 4.17807 4.31504 4.37307 4.42149 4.45643 4.50750 4.54712 4.60481 4.71024 4.75908 4.76389 4.81273 4.85610 4.87159 4.95055 4.97168 5.02540 5.03903 5.07577 5.10432 5.15097 5.18377 5.26191 5.30054 5.40154 5.49293 5.53792 5.64188 5.64922 5.68833 6.29476 6.41145 6.90483 6.92120 7.14126 7.81947 8.40629 9.18546 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002739 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.271684 B =10218.662353 C =10619.575092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.127 3.873 3 C -0.143 4.143 4 C -0.084 4.084 5 C 0.553 3.447 6 O -0.579 6.579 7 N -0.590 5.590 8 C 0.086 3.914 9 C -0.126 4.126 10 C -0.097 4.097 11 C -0.105 4.105 12 H 0.050 0.950 13 C 0.195 3.805 14 N -0.598 5.598 15 C -0.258 4.258 16 H 0.069 0.931 17 C -0.044 4.044 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.261 1.261 21 H -0.291 1.291 22 H -0.296 1.296 23 C 0.143 3.857 24 C -0.122 4.122 25 C 0.161 3.839 26 H 0.064 0.936 27 C -0.152 4.152 28 C 0.128 3.872 29 C -0.103 4.103 30 N -0.488 5.488 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.048 0.952 42 H -0.015 1.015 43 H 0.249 0.751 44 H 0.065 0.935 45 H 0.003 0.997 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.170 0.830 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 -22.423 2.390 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.010 4.010 3 C -0.163 4.163 4 C -0.094 4.094 5 C 0.342 3.658 6 O -0.460 6.460 7 N -0.320 5.320 8 C -0.035 4.035 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.126 4.126 12 H 0.069 0.931 13 C 0.068 3.932 14 N -0.321 5.321 15 C -0.388 4.388 16 H 0.086 0.914 17 C -0.240 4.240 18 N -0.580 5.580 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.218 1.218 22 H -0.223 1.223 23 C 0.017 3.983 24 C -0.162 4.162 25 C 0.059 3.941 26 H 0.083 0.917 27 C -0.172 4.172 28 C -0.010 4.010 29 C -0.160 4.160 30 N -0.200 5.200 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.003 0.997 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.187 0.813 49 H 0.109 0.891 50 H 0.100 0.900 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.344 -22.550 2.593 26.331 hybrid contribution 1.122 2.273 -0.546 2.593 sum -12.223 -20.278 2.047 23.765 Atomic orbital electron populations 1.20811 0.86281 1.04498 1.04300 1.21642 0.98564 0.87036 0.93792 1.22127 0.93098 1.00502 1.00601 1.20254 0.94617 0.93251 1.01310 1.18690 0.80876 0.87690 0.78583 1.90757 1.69807 1.38276 1.47150 1.48384 1.17821 1.17175 1.48610 1.22625 1.01615 0.88008 0.91229 1.21940 0.99324 0.98677 0.96479 1.21354 0.98625 0.94252 0.99259 1.21716 0.98062 0.97660 0.95133 0.93134 1.20287 0.86271 0.91342 0.95287 1.44152 1.01858 1.76098 1.10031 1.19417 0.88037 1.07053 1.24310 0.91370 1.25946 1.00484 0.94300 1.03283 1.70216 1.40017 1.08720 1.39021 0.85285 0.79608 0.77659 0.78347 1.18466 1.21807 1.22311 1.20994 0.97652 0.93229 0.86452 1.22286 0.94557 0.99393 0.99936 1.21083 0.90526 0.86173 0.96366 0.91744 1.22588 1.02984 0.90831 1.00760 1.21822 0.88927 0.96955 0.93314 1.20863 1.00645 0.90092 1.04382 1.67345 1.10478 1.29569 1.12629 0.88989 0.89704 0.89420 0.84355 0.88633 0.86724 0.87741 0.92460 0.91156 0.93237 0.93368 0.99743 0.94198 0.91641 0.97882 0.89867 0.91218 0.81256 0.89149 0.90030 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.17 71.24 0.72 -0.61 16 2 C 0.13 2.51 6.78 42.54 0.29 2.80 16 3 C -0.14 -3.28 9.34 22.63 0.21 -3.07 16 4 C -0.08 -2.03 5.41 -19.88 -0.11 -2.13 16 5 C 0.55 17.10 7.47 86.88 0.65 17.75 16 6 O -0.58 -22.96 16.31 -3.76 -0.06 -23.02 16 7 N -0.59 -16.63 2.66 -796.90 -2.12 -18.75 16 8 C 0.09 1.69 4.32 86.34 0.37 2.07 16 9 C -0.13 -2.75 6.08 30.68 0.19 -2.56 16 10 C -0.10 -3.04 4.86 30.58 0.15 -2.89 16 11 C -0.10 -3.93 2.43 -11.02 -0.03 -3.96 16 12 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 13 C 0.19 9.40 4.68 86.23 0.40 9.80 16 14 N -0.60 -29.15 2.60 -700.05 -1.82 -30.97 16 15 C -0.26 -13.64 9.51 84.03 0.80 -12.84 16 16 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 17 C -0.04 -2.41 4.85 84.86 0.41 -2.00 16 18 N -0.93 -55.50 11.74 21.65 0.25 -55.24 16 19 Si 0.96 43.81 29.59 68.60 2.03 45.84 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 C 0.14 5.87 6.52 86.32 0.56 6.44 16 24 C -0.12 -3.99 5.03 30.84 0.16 -3.83 16 25 C 0.16 5.63 2.67 44.95 0.12 5.75 16 26 H 0.06 2.68 7.05 -2.39 -0.02 2.67 16 27 C -0.15 -2.71 7.12 22.63 0.16 -2.55 16 28 C 0.13 2.15 6.78 42.54 0.29 2.44 16 29 C -0.10 -0.97 10.17 71.24 0.72 -0.24 16 30 N -0.49 -9.82 10.16 -172.23 -1.75 -11.57 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.14 3.21 8.03 -2.91 -0.02 3.18 16 35 H 0.10 1.54 7.19 -2.39 -0.02 1.53 16 36 H 0.12 1.80 4.26 -2.39 -0.01 1.78 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 2.32 6.16 -2.39 -0.01 2.31 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.05 2.59 6.58 -2.39 -0.02 2.57 16 42 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.08 2.48 5.32 -2.39 -0.01 2.46 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.17 2.22 5.86 -2.91 -0.02 2.20 16 49 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.10 0.50 8.08 -2.39 -0.02 0.48 16 Total: -1.00 -71.81 388.83 3.53 -68.27 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.93 Total: 15.07 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.07 Total: 10.37 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.43 Total: -116.53 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.81 3.53 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021601442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.989 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds