Wall clock time and date at job start Wed Apr 1 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38669 * 120.79257 * 2 1 4 4 C 1.38190 * 119.16398 * 180.27029 * 3 2 1 5 5 N 1.31876 * 120.76321 * 359.74953 * 4 3 2 6 6 C 1.31860 * 121.72973 * 359.97438 * 5 4 3 7 7 C 1.38224 * 120.76151 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.41816 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47306 * 265.00145 * 8 7 6 10 10 O 1.21283 * 119.99918 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00434 * 180.02562 * 9 8 7 12 12 C 1.46942 * 120.83998 * 359.97438 * 11 9 8 13 13 C 1.53150 * 109.02536 * 234.04664 * 12 11 9 14 14 C 1.51531 * 109.01215 * 305.90948 * 13 12 11 15 15 C 1.52857 * 110.19330 * 61.23483 * 14 13 12 16 16 H 1.09002 * 109.25147 * 56.67685 * 15 14 13 17 17 C 1.52766 * 110.21178 * 176.72318 * 15 14 13 18 18 N 1.46890 * 109.19461 * 66.55249 * 17 15 14 19 19 C 1.36936 * 120.77540 * 233.32150 * 18 17 15 20 20 H 1.08007 * 119.99809 * 152.76788 * 19 18 17 21 21 C 1.38809 * 120.00372 * 332.76741 * 19 18 17 22 22 N 1.31615 * 120.00187 * 159.34044 * 21 19 18 23 23 Si 1.86803 * 119.99860 * 339.35262 * 21 19 18 24 24 H 1.48501 * 109.47324 * 92.78932 * 23 21 19 25 25 H 1.48496 * 109.47047 * 212.78797 * 23 21 19 26 26 H 1.48500 * 109.46952 * 332.78828 * 23 21 19 27 27 C 1.46974 * 118.45088 * 53.34631 * 18 17 15 28 28 C 1.53093 * 108.61882 * 305.67923 * 27 18 17 29 29 C 1.47304 * 120.84819 * 180.02562 * 11 9 8 30 30 H 1.08998 * 110.67264 * 4.54471 * 29 11 9 31 31 H 1.08996 * 109.47603 * 270.24797 * 1 2 3 32 32 H 1.09002 * 109.46848 * 30.24948 * 1 2 3 33 33 H 1.08998 * 109.47045 * 150.24724 * 1 2 3 34 34 H 1.08001 * 120.42038 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.61604 * 179.72536 * 4 3 2 36 36 H 1.08000 * 119.61946 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47090 * 145.00525 * 8 7 6 38 38 H 1.08997 * 109.47029 * 25.00527 * 8 7 6 39 39 H 1.09008 * 109.54969 * 353.91089 * 12 11 9 40 40 H 1.09004 * 109.54630 * 114.18248 * 12 11 9 41 41 H 1.09000 * 109.46735 * 65.92335 * 13 12 11 42 42 H 1.08994 * 109.47133 * 185.92061 * 13 12 11 43 43 H 1.09003 * 109.75327 * 300.58178 * 14 13 12 44 44 H 1.09002 * 108.38018 * 181.02650 * 14 13 12 45 45 H 1.08996 * 109.51840 * 186.46647 * 17 15 14 46 46 H 1.09009 * 109.51814 * 306.58346 * 17 15 14 47 47 H 0.97001 * 120.00116 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.61123 * 65.41634 * 27 18 17 49 49 H 1.09003 * 109.61484 * 185.94051 * 27 18 17 50 50 H 1.08993 * 109.45594 * 175.37925 * 28 27 18 51 51 H 1.08994 * 109.45488 * 295.33658 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0057 5 7 4.2403 0.0000 -0.0061 6 6 3.5983 -1.1517 -0.0007 7 6 2.2166 -1.1910 0.0052 8 6 1.4908 -2.5116 0.0108 9 6 1.1345 -2.8950 -1.4023 10 8 1.4402 -2.1677 -2.3234 11 7 0.4760 -4.0462 -1.6427 12 6 0.0970 -4.9414 -0.5408 13 6 0.6380 -6.3448 -0.8293 14 6 0.1597 -6.7867 -2.1975 15 6 0.6877 -5.8375 -3.2730 16 1 1.7755 -5.7987 -3.2156 17 6 0.2737 -6.3279 -4.6593 18 7 -1.1861 -6.2298 -4.7902 19 6 -1.9301 -7.3151 -5.1693 20 1 -2.9608 -7.3988 -4.8575 21 6 -1.3597 -8.3077 -5.9543 22 7 -1.8953 -9.5095 -5.9874 23 14 0.1682 -7.9379 -6.9633 24 1 1.3778 -8.2924 -6.1782 25 1 0.1395 -8.7356 -8.2155 26 1 0.2019 -6.4916 -7.2985 27 6 -1.8295 -4.9394 -4.5054 28 6 -1.4100 -4.4824 -3.1058 29 6 0.1189 -4.4394 -3.0166 30 1 0.5274 -3.7316 -3.7379 31 1 -0.3634 0.0044 1.0276 32 1 -0.3633 0.8878 -0.5177 33 1 -0.3633 -0.8922 -0.5100 34 1 1.6968 2.1377 -0.0004 35 1 4.1584 2.0753 -0.0102 36 1 4.1585 -2.0751 -0.0008 37 1 0.5805 -2.4234 0.6038 38 1 2.1338 -3.2777 0.4440 39 1 0.5220 -4.5715 0.3924 40 1 -0.9893 -4.9791 -0.4587 41 1 1.7277 -6.3253 -0.8093 42 1 0.2731 -7.0378 -0.0712 43 1 -0.9300 -6.7942 -2.2222 44 1 0.5350 -7.7929 -2.3844 45 1 0.7499 -5.7108 -5.4211 46 1 0.5825 -7.3657 -4.7857 47 1 -1.4969 -10.2031 -6.5363 48 1 -1.5113 -4.2015 -5.2419 49 1 -2.9128 -5.0544 -4.5434 50 1 -1.8132 -3.4885 -2.9124 51 1 -1.7968 -5.1816 -2.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021606976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:34 Heat of formation + Delta-G solvation = 1.622720 kcal Electronic energy + Delta-G solvation = -31407.076770 eV Core-core repulsion = 27498.756408 eV Total energy + Delta-G solvation = -3908.320362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93119 -41.11810 -39.50978 -37.24013 -35.37150 -34.44551 -34.04593 -33.41901 -32.23518 -31.55753 -29.49621 -28.40256 -27.20991 -26.27826 -24.45284 -23.74730 -23.57262 -22.88465 -22.58268 -20.53739 -19.41796 -18.56904 -18.20912 -17.74266 -17.35611 -17.30335 -16.88784 -16.25880 -16.17118 -15.84986 -15.53255 -15.45230 -15.30105 -14.83755 -14.54971 -14.44520 -14.30304 -14.09724 -13.99902 -13.78468 -13.72049 -13.59956 -13.51263 -13.47905 -13.18536 -12.86602 -12.61861 -12.51799 -12.27682 -12.18339 -11.96707 -11.85688 -11.79540 -11.46358 -11.39018 -11.05791 -10.89516 -10.68585 -10.39525 -10.30368 -9.87287 -9.54395 -8.94629 -8.16897 -5.47119 0.16766 0.34736 1.25524 1.38349 1.45675 1.64972 1.99590 2.39226 2.86052 3.04684 3.31299 3.49856 3.55953 3.69980 3.82307 3.84410 3.86805 3.96459 3.98160 4.04697 4.11032 4.17121 4.29754 4.37197 4.48114 4.48430 4.56314 4.58749 4.61173 4.64599 4.71746 4.74620 4.75524 4.83990 4.85786 4.88163 4.91360 4.98531 5.03163 5.06939 5.11346 5.19861 5.20596 5.30928 5.37648 5.42631 5.58434 5.63967 5.82657 5.86960 6.13066 6.51514 6.89828 7.05484 7.20955 7.61326 8.03472 9.02801 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002810 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.232384 B = 9962.840720 C =10046.089307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.178 4.178 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.128 4.128 8 C -0.089 4.089 9 C 0.514 3.486 10 O -0.585 6.585 11 N -0.603 5.603 12 C 0.102 3.898 13 C -0.126 4.126 14 C -0.104 4.104 15 C -0.101 4.101 16 H 0.066 0.934 17 C 0.130 3.870 18 N -0.612 5.612 19 C -0.235 4.235 20 H 0.061 0.939 21 C -0.027 4.027 22 N -0.952 5.952 23 Si 0.932 3.068 24 H -0.278 1.278 25 H -0.312 1.312 26 H -0.270 1.270 27 C 0.144 3.856 28 C -0.126 4.126 29 C 0.162 3.838 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.260 0.740 48 H 0.024 0.976 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 18.068 20.622 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.197 4.197 4 C -0.072 4.072 5 N -0.230 5.230 6 C -0.062 4.062 7 C -0.130 4.130 8 C -0.129 4.129 9 C 0.304 3.696 10 O -0.465 6.465 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.142 4.142 15 C -0.122 4.122 16 H 0.084 0.916 17 C 0.004 3.996 18 N -0.336 5.336 19 C -0.365 4.365 20 H 0.078 0.922 21 C -0.222 4.222 22 N -0.599 5.599 23 Si 0.763 3.237 24 H -0.206 1.206 25 H -0.241 1.241 26 H -0.195 1.195 27 C 0.019 3.981 28 C -0.166 4.166 29 C 0.058 3.942 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.176 0.824 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.049 18.322 20.091 28.090 hybrid contribution -0.129 -0.536 -1.560 1.654 sum 6.920 17.786 18.531 26.602 Atomic orbital electron populations 1.20880 0.88923 1.03466 1.03932 1.20533 0.97902 0.92627 0.93558 1.22313 0.95478 0.99526 1.02421 1.23163 0.92655 0.96512 0.94896 1.67655 1.42194 0.99342 1.13762 1.22858 0.91655 0.96597 0.95058 1.20386 0.94796 0.95323 1.02536 1.20700 1.03727 0.95261 0.93236 1.21052 0.76535 0.80089 0.91898 1.90711 1.55359 1.52594 1.47837 1.48481 1.56305 1.20920 1.07718 1.22057 1.01383 0.89137 0.89368 1.21654 1.01402 0.96916 0.96431 1.21108 1.01293 0.97317 0.94446 1.21672 0.99228 0.95442 0.95870 0.91555 1.21222 0.84553 0.98776 0.95049 1.44421 1.01959 1.07882 1.79352 1.18827 0.96376 0.96801 1.24477 0.92159 1.25734 1.00655 0.95787 1.00025 1.69929 1.44294 1.02421 1.43233 0.86142 0.81238 0.77705 0.78659 1.20550 1.24064 1.19478 1.21053 0.97143 0.85615 0.94294 1.22219 0.94450 1.01424 0.98474 1.20945 0.95038 0.94495 0.83722 0.91069 0.88029 0.90398 0.92075 0.82416 0.80798 0.82205 0.84823 0.84987 0.86059 0.90145 0.91267 0.88496 0.91871 0.94087 0.96425 0.92890 0.93045 0.95751 0.91606 0.90757 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.31 71.23 0.66 -0.84 16 2 C -0.04 -0.68 5.92 -19.67 -0.12 -0.80 16 3 C -0.18 -2.95 9.82 22.36 0.22 -2.73 16 4 C 0.08 1.59 11.18 84.67 0.95 2.53 16 5 N -0.52 -12.33 10.36 -195.84 -2.03 -14.36 16 6 C 0.09 2.04 10.84 84.69 0.92 2.96 16 7 C -0.13 -2.44 4.39 -19.77 -0.09 -2.53 16 8 C -0.09 -1.27 3.53 29.10 0.10 -1.17 16 9 C 0.51 12.08 7.01 87.66 0.61 12.69 16 10 O -0.58 -19.64 15.51 -3.04 -0.05 -19.69 16 11 N -0.60 -13.63 2.64 -793.94 -2.10 -15.73 16 12 C 0.10 1.55 5.83 86.35 0.50 2.06 16 13 C -0.13 -2.38 6.06 30.16 0.18 -2.19 16 14 C -0.10 -3.12 4.69 30.07 0.14 -2.98 16 15 C -0.10 -3.39 2.53 -10.89 -0.03 -3.42 16 16 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 17 C 0.13 5.55 3.61 86.23 0.31 5.86 16 18 N -0.61 -27.96 2.37 -700.06 -1.66 -29.62 16 19 C -0.24 -12.89 10.05 84.03 0.84 -12.05 16 20 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 21 C -0.03 -1.56 5.23 84.86 0.44 -1.11 16 22 N -0.95 -58.87 13.97 21.65 0.30 -58.57 16 23 Si 0.93 47.14 24.35 68.60 1.67 48.81 16 24 H -0.28 -13.43 6.62 99.48 0.66 -12.77 16 25 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 26 H -0.27 -13.43 6.63 99.48 0.66 -12.77 16 27 C 0.14 5.42 6.51 86.32 0.56 5.99 16 28 C -0.13 -3.75 4.97 30.69 0.15 -3.60 16 29 C 0.16 4.91 2.69 44.94 0.12 5.03 16 30 H 0.07 2.55 7.10 -2.39 -0.02 2.54 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.06 0.94 6.35 -2.39 -0.02 0.93 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.13 1.11 6.91 -2.39 -0.02 1.10 16 38 H 0.13 1.16 7.63 -2.39 -0.02 1.14 16 39 H 0.12 0.88 5.96 -2.38 -0.01 0.87 16 40 H 0.08 1.17 7.18 -2.39 -0.02 1.16 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 2.15 6.05 -2.39 -0.01 2.13 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.02 0.78 7.06 -2.39 -0.02 0.77 16 46 H 0.05 2.51 4.50 -2.38 -0.01 2.50 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 2.45 7.94 -2.39 -0.02 2.43 16 50 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.08 2.22 5.19 -2.39 -0.01 2.21 16 Total: -1.00 -76.41 381.22 3.47 -72.94 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.83 Total: 12.50 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.50 Total: 3.70 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -5.48 Total: -118.27 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal Total: -76.41 3.47 -72.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021606976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.563 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds