Wall clock time and date at job start Wed Apr 1 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38631 * 120.76056 * 2 1 4 4 C 1.38549 * 119.35667 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.55023 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.90389 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.64305 * 359.97438 * 6 4 3 8 8 C 1.48162 * 119.72315 * 180.02562 * 7 6 4 9 9 O 1.21523 * 120.00071 * 169.45761 * 8 7 6 10 10 N 1.34780 * 120.00301 * 349.45135 * 8 7 6 11 11 C 1.47071 * 120.84143 * 350.58661 * 10 8 7 12 12 C 1.53123 * 109.04684 * 233.39655 * 11 10 8 13 13 C 1.53146 * 109.61995 * 306.00680 * 12 11 10 14 14 C 1.52824 * 109.26725 * 60.84194 * 13 12 11 15 15 H 1.09003 * 109.46790 * 58.00517 * 14 13 12 16 16 C 1.53033 * 110.51655 * 178.41831 * 14 13 12 17 17 N 1.47068 * 108.50305 * 175.23217 * 16 14 13 18 18 C 1.36929 * 120.47283 * 126.78383 * 17 16 14 19 19 H 1.08003 * 120.00265 * 333.91804 * 18 17 16 20 20 C 1.38820 * 120.00241 * 153.92001 * 18 17 16 21 21 N 1.31615 * 119.99980 * 158.62349 * 20 18 17 22 22 Si 1.86803 * 119.99586 * 338.62126 * 20 18 17 23 23 H 1.48497 * 109.47030 * 94.61070 * 22 20 18 24 24 H 1.48501 * 109.46878 * 214.60736 * 22 20 18 25 25 H 1.48498 * 109.46922 * 334.60754 * 22 20 18 26 26 C 1.46868 * 119.05525 * 306.80801 * 17 16 14 27 27 C 1.53308 * 109.10252 * 52.65260 * 26 17 16 28 28 C 1.46707 * 120.84638 * 170.55867 * 10 8 7 29 29 H 1.09005 * 109.53385 * 245.23171 * 28 10 8 30 30 C 1.38594 * 120.75619 * 180.27318 * 2 1 3 31 31 H 1.08994 * 109.47075 * 90.00413 * 1 2 3 32 32 H 1.08999 * 109.46641 * 210.00164 * 1 2 3 33 33 H 1.08996 * 109.46852 * 330.00292 * 1 2 3 34 34 H 1.08004 * 120.31719 * 0.02562 * 3 2 1 35 35 H 1.09007 * 109.47276 * 270.02355 * 5 4 3 36 36 H 1.09000 * 109.47230 * 30.01975 * 5 4 3 37 37 H 1.09004 * 109.47414 * 150.01796 * 5 4 3 38 38 H 1.09000 * 109.54049 * 113.52400 * 11 10 8 39 39 H 1.09002 * 109.61087 * 353.30891 * 11 10 8 40 40 H 1.09003 * 109.44541 * 66.04716 * 12 11 10 41 41 H 1.08997 * 109.44884 * 185.96015 * 12 11 10 42 42 H 1.08999 * 109.50660 * 180.78004 * 13 12 11 43 43 H 1.08998 * 109.50352 * 300.90928 * 13 12 11 44 44 H 1.08997 * 109.50212 * 55.52604 * 16 14 13 45 45 H 1.09005 * 109.74503 * 295.07700 * 16 14 13 46 46 H 0.97008 * 119.99762 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.53025 * 292.76550 * 26 17 16 48 48 H 1.08999 * 109.53097 * 172.54062 * 26 17 16 49 49 H 1.09001 * 109.56003 * 186.05700 * 27 26 17 50 50 H 1.09004 * 109.64826 * 65.78897 * 27 26 17 51 51 H 1.07996 * 120.47294 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4497 -0.0011 6 7 4.2488 0.0126 -0.0016 7 6 3.6082 -1.1498 -0.0016 8 6 4.3806 -2.4142 -0.0022 9 8 3.8145 -3.4721 0.1903 10 7 5.7111 -2.3911 -0.2164 11 6 6.3832 -1.1579 -0.6529 12 6 7.1949 -1.4521 -1.9175 13 6 8.1380 -2.6310 -1.6606 14 6 7.3138 -3.8680 -1.3053 15 1 6.6201 -4.0877 -2.1169 16 6 8.2275 -5.0749 -1.0807 17 7 7.4033 -6.2069 -0.6311 18 6 7.4638 -7.4110 -1.2803 19 1 7.7534 -7.4500 -2.3200 20 6 7.1530 -8.5817 -0.6020 21 7 6.7991 -9.6570 -1.2734 22 14 7.2370 -8.6307 1.2634 23 1 5.8909 -8.3558 1.8270 24 1 7.6929 -9.9738 1.7033 25 1 8.1941 -7.6015 1.7430 26 6 6.5140 -6.0273 0.5239 27 6 5.6312 -4.7958 0.2907 28 6 6.5257 -3.5952 -0.0193 29 1 7.2195 -3.4348 0.8061 30 6 2.2157 -1.1910 -0.0057 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6937 2.1366 0.0004 35 1 4.5623 2.7613 -1.0290 36 1 3.8002 3.2190 0.5131 37 1 5.3267 2.3036 0.5121 38 1 7.0499 -0.8075 0.1350 39 1 5.6383 -0.3917 -0.8678 40 1 6.5171 -1.7009 -2.7341 41 1 7.7791 -0.5721 -2.1867 42 1 8.7247 -2.8299 -2.5575 43 1 8.8061 -2.3892 -0.8341 44 1 8.9679 -4.8338 -0.3181 45 1 8.7308 -5.3341 -2.0122 46 1 6.5815 -10.4749 -0.7994 47 1 7.1109 -5.8827 1.4244 48 1 5.8849 -6.9099 0.6401 49 1 5.0449 -4.5921 1.1867 50 1 4.9617 -4.9786 -0.5498 51 1 1.6960 -2.1376 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021617289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:05 Heat of formation + Delta-G solvation = 47.208302 kcal Electronic energy + Delta-G solvation = -31443.811596 eV Core-core repulsion = 27537.467973 eV Total energy + Delta-G solvation = -3906.343623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.20252 -39.90883 -37.75706 -36.05800 -34.61173 -33.32155 -32.83177 -32.25180 -30.42837 -29.70077 -28.39387 -27.84876 -25.71564 -25.58447 -23.58779 -22.87274 -22.12139 -21.51929 -20.46379 -19.72391 -19.24663 -17.27118 -16.63479 -16.56194 -16.30687 -15.62437 -15.42251 -15.14851 -14.74263 -14.50212 -14.23656 -14.10037 -14.01704 -13.71629 -13.54143 -13.29826 -13.03503 -13.00332 -12.81304 -12.62336 -12.51189 -12.45417 -12.25973 -12.22514 -11.95355 -11.78369 -11.39771 -11.11223 -11.01068 -10.86890 -10.49006 -10.29315 -10.21924 -10.08353 -9.86148 -9.63045 -9.39070 -9.27220 -9.23195 -8.90646 -8.48636 -8.23325 -6.87276 -5.85835 -3.19391 0.45087 0.86221 2.68722 3.03338 3.43270 3.56156 3.59377 3.59860 3.82463 4.21065 4.32675 4.62970 4.65068 4.75424 4.85597 4.94114 4.99269 5.07626 5.11230 5.14933 5.21143 5.22062 5.24817 5.28890 5.35036 5.46975 5.49437 5.54081 5.61995 5.68131 5.73445 5.78883 5.90990 5.93825 6.05749 6.06261 6.16125 6.17539 6.25543 6.28534 6.37775 6.39746 6.52413 6.61557 6.71384 6.82271 6.90363 6.96073 7.24540 7.45983 7.64128 8.04930 8.30731 8.40871 9.03463 9.82089 10.19106 11.30215 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003240 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.054760 B = 8638.794398 C = 9782.985822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.157 4.157 4 C 0.121 3.879 5 C -0.104 4.104 6 N -0.455 5.455 7 C 0.095 3.905 8 C 0.563 3.437 9 O -0.517 6.517 10 N -0.586 5.586 11 C 0.083 3.917 12 C -0.134 4.134 13 C -0.114 4.114 14 C -0.115 4.115 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.910 5.910 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.270 1.270 26 C 0.121 3.879 27 C -0.117 4.117 28 C 0.156 3.844 29 H 0.067 0.933 30 C -0.121 4.121 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.261 0.739 47 H 0.021 0.979 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 28.609 2.071 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.177 4.177 4 C -0.017 4.017 5 C -0.161 4.161 6 N -0.169 5.169 7 C -0.043 4.043 8 C 0.349 3.651 9 O -0.393 6.393 10 N -0.317 5.317 11 C -0.039 4.039 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.136 4.136 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.330 5.330 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.176 4.176 21 N -0.553 5.553 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.196 1.196 26 C -0.005 4.005 27 C -0.157 4.157 28 C 0.054 3.946 29 H 0.085 0.915 30 C -0.142 4.142 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.270 27.806 2.179 28.823 hybrid contribution -0.780 -0.124 1.027 1.295 sum -8.049 27.683 3.206 29.007 Atomic orbital electron populations 1.20846 0.89662 1.03644 1.03195 1.20365 0.97137 0.92520 0.95155 1.22012 0.94740 0.98799 1.02156 1.21453 0.91339 0.94122 0.94835 1.20737 1.00445 0.91612 1.03328 1.67557 1.39031 0.97727 1.12558 1.21437 0.91853 0.92221 0.98753 1.17949 0.82069 0.86959 0.78121 1.90894 1.69628 1.29329 1.49456 1.48056 1.06136 1.12399 1.65061 1.22719 0.98338 0.87316 0.95546 1.21955 0.98565 0.98607 0.98141 1.21522 0.97631 0.94550 1.01472 1.22050 0.98452 0.95648 0.97405 0.90733 1.20871 0.91380 0.86173 0.98310 1.44401 1.44599 1.09503 1.34457 1.18920 1.43280 0.81961 0.94417 0.89763 1.25225 0.99610 0.95244 0.97538 1.69853 1.47556 1.02612 1.35272 0.86954 0.77852 0.75888 0.88070 1.21602 1.23318 1.19552 1.21527 0.92144 0.97180 0.89690 1.22471 0.96880 0.93136 1.03169 1.21329 0.92289 0.83824 0.97176 0.91514 1.22020 0.93795 0.99651 0.98688 0.90219 0.90583 0.90855 0.84524 0.90166 0.90589 0.90151 0.92122 0.84855 0.92090 0.91249 0.91743 0.92068 0.95961 0.91628 0.92879 0.96123 0.90809 0.91168 0.90208 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.06 36.01 0.36 -0.32 16 2 C -0.04 -0.39 5.91 -104.35 -0.62 -1.00 16 3 C -0.16 -1.21 9.45 -39.32 -0.37 -1.58 16 4 C 0.12 1.08 6.78 -82.61 -0.56 0.52 16 5 C -0.10 -0.57 10.17 36.00 0.37 -0.21 16 6 N -0.45 -5.27 6.15 -6.06 -0.04 -5.30 16 7 C 0.09 1.28 6.54 -83.01 -0.54 0.74 16 8 C 0.56 9.36 7.56 -12.18 -0.09 9.27 16 9 O -0.52 -10.09 11.96 5.35 0.06 -10.02 16 10 N -0.59 -9.24 2.97 -166.31 -0.49 -9.74 16 11 C 0.08 1.04 5.81 -3.67 -0.02 1.02 16 12 C -0.13 -1.59 6.07 -26.59 -0.16 -1.75 16 13 C -0.11 -1.52 5.25 -26.75 -0.14 -1.66 16 14 C -0.11 -2.00 2.21 -90.55 -0.20 -2.20 16 15 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 16 C 0.16 3.24 5.86 -3.72 -0.02 3.22 16 17 N -0.61 -15.20 2.80 -172.28 -0.48 -15.68 16 18 C -0.26 -7.50 10.03 -15.06 -0.15 -7.65 16 19 H 0.08 2.59 8.05 -52.48 -0.42 2.17 16 20 C 0.02 0.67 5.22 -17.43 -0.09 0.58 16 21 N -0.91 -28.93 13.97 55.49 0.78 -28.15 16 22 Si 0.88 23.52 24.33 -169.99 -4.14 19.38 16 23 H -0.29 -7.55 6.68 56.52 0.38 -7.18 16 24 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 25 H -0.27 -7.05 6.51 56.52 0.37 -6.68 16 26 C 0.12 2.88 4.19 -3.68 -0.02 2.86 16 27 C -0.12 -2.48 3.80 -26.63 -0.10 -2.58 16 28 C 0.16 2.78 2.63 -67.73 -0.18 2.60 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 C -0.12 -1.42 9.33 -39.05 -0.36 -1.78 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 1.59 4.23 -73.75 -0.31 1.28 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 46 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 47 H 0.02 0.49 6.96 -51.93 -0.36 0.13 16 48 H 0.07 1.94 4.48 -51.93 -0.23 1.71 16 49 H 0.07 1.47 6.60 -51.93 -0.34 1.13 16 50 H 0.08 1.87 7.01 -51.93 -0.36 1.50 16 51 H 0.15 1.76 7.68 -52.49 -0.40 1.35 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -34.34 382.49 -9.82 -44.17 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.38 Total: -0.49 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.90 Total: 0.08 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.24 Total: -58.87 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.02 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.34 -9.82 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021617289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.377 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds