Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38631 * 120.76056 * 2 1 4 4 C 1.38549 * 119.35667 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.55023 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.90389 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.64305 * 359.97438 * 6 4 3 8 8 C 1.48162 * 119.72315 * 180.02562 * 7 6 4 9 9 O 1.21523 * 120.00071 * 169.45761 * 8 7 6 10 10 N 1.34780 * 120.00301 * 349.45135 * 8 7 6 11 11 C 1.47071 * 120.84143 * 350.58661 * 10 8 7 12 12 C 1.53123 * 109.04684 * 233.39655 * 11 10 8 13 13 C 1.53146 * 109.61995 * 306.00680 * 12 11 10 14 14 C 1.52824 * 109.26725 * 60.84194 * 13 12 11 15 15 H 1.09003 * 109.46790 * 58.00517 * 14 13 12 16 16 C 1.53033 * 110.51655 * 178.41831 * 14 13 12 17 17 N 1.47068 * 108.50305 * 175.23217 * 16 14 13 18 18 C 1.36929 * 120.47283 * 126.78383 * 17 16 14 19 19 H 1.08003 * 120.00265 * 333.91804 * 18 17 16 20 20 C 1.38820 * 120.00241 * 153.92001 * 18 17 16 21 21 N 1.31615 * 119.99980 * 158.62349 * 20 18 17 22 22 Si 1.86803 * 119.99586 * 338.62126 * 20 18 17 23 23 H 1.48497 * 109.47030 * 94.61070 * 22 20 18 24 24 H 1.48501 * 109.46878 * 214.60736 * 22 20 18 25 25 H 1.48498 * 109.46922 * 334.60754 * 22 20 18 26 26 C 1.46868 * 119.05525 * 306.80801 * 17 16 14 27 27 C 1.53308 * 109.10252 * 52.65260 * 26 17 16 28 28 C 1.46707 * 120.84638 * 170.55867 * 10 8 7 29 29 H 1.09005 * 109.53385 * 245.23171 * 28 10 8 30 30 C 1.38594 * 120.75619 * 180.27318 * 2 1 3 31 31 H 1.08994 * 109.47075 * 90.00413 * 1 2 3 32 32 H 1.08999 * 109.46641 * 210.00164 * 1 2 3 33 33 H 1.08996 * 109.46852 * 330.00292 * 1 2 3 34 34 H 1.08004 * 120.31719 * 0.02562 * 3 2 1 35 35 H 1.09007 * 109.47276 * 270.02355 * 5 4 3 36 36 H 1.09000 * 109.47230 * 30.01975 * 5 4 3 37 37 H 1.09004 * 109.47414 * 150.01796 * 5 4 3 38 38 H 1.09000 * 109.54049 * 113.52400 * 11 10 8 39 39 H 1.09002 * 109.61087 * 353.30891 * 11 10 8 40 40 H 1.09003 * 109.44541 * 66.04716 * 12 11 10 41 41 H 1.08997 * 109.44884 * 185.96015 * 12 11 10 42 42 H 1.08999 * 109.50660 * 180.78004 * 13 12 11 43 43 H 1.08998 * 109.50352 * 300.90928 * 13 12 11 44 44 H 1.08997 * 109.50212 * 55.52604 * 16 14 13 45 45 H 1.09005 * 109.74503 * 295.07700 * 16 14 13 46 46 H 0.97008 * 119.99762 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.53025 * 292.76550 * 26 17 16 48 48 H 1.08999 * 109.53097 * 172.54062 * 26 17 16 49 49 H 1.09001 * 109.56003 * 186.05700 * 27 26 17 50 50 H 1.09004 * 109.64826 * 65.78897 * 27 26 17 51 51 H 1.07996 * 120.47294 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4497 -0.0011 6 7 4.2488 0.0126 -0.0016 7 6 3.6082 -1.1498 -0.0016 8 6 4.3806 -2.4142 -0.0022 9 8 3.8145 -3.4721 0.1903 10 7 5.7111 -2.3911 -0.2164 11 6 6.3832 -1.1579 -0.6529 12 6 7.1949 -1.4521 -1.9175 13 6 8.1380 -2.6310 -1.6606 14 6 7.3138 -3.8680 -1.3053 15 1 6.6201 -4.0877 -2.1169 16 6 8.2275 -5.0749 -1.0807 17 7 7.4033 -6.2069 -0.6311 18 6 7.4638 -7.4110 -1.2803 19 1 7.7534 -7.4500 -2.3200 20 6 7.1530 -8.5817 -0.6020 21 7 6.7991 -9.6570 -1.2734 22 14 7.2370 -8.6307 1.2634 23 1 5.8909 -8.3558 1.8270 24 1 7.6929 -9.9738 1.7033 25 1 8.1941 -7.6015 1.7430 26 6 6.5140 -6.0273 0.5239 27 6 5.6312 -4.7958 0.2907 28 6 6.5257 -3.5952 -0.0193 29 1 7.2195 -3.4348 0.8061 30 6 2.2157 -1.1910 -0.0057 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6937 2.1366 0.0004 35 1 4.5623 2.7613 -1.0290 36 1 3.8002 3.2190 0.5131 37 1 5.3267 2.3036 0.5121 38 1 7.0499 -0.8075 0.1350 39 1 5.6383 -0.3917 -0.8678 40 1 6.5171 -1.7009 -2.7341 41 1 7.7791 -0.5721 -2.1867 42 1 8.7247 -2.8299 -2.5575 43 1 8.8061 -2.3892 -0.8341 44 1 8.9679 -4.8338 -0.3181 45 1 8.7308 -5.3341 -2.0122 46 1 6.5815 -10.4749 -0.7994 47 1 7.1109 -5.8827 1.4244 48 1 5.8849 -6.9099 0.6401 49 1 5.0449 -4.5921 1.1867 50 1 4.9617 -4.9786 -0.5498 51 1 1.6960 -2.1376 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021617289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 25.752330 kcal Electronic energy + Delta-G solvation = -31444.741997 eV Core-core repulsion = 27537.467973 eV Total energy + Delta-G solvation = -3907.274024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.23875 -40.99877 -39.18547 -37.59702 -35.39462 -34.58037 -34.15685 -33.72145 -32.21860 -31.21921 -29.06081 -28.37959 -27.35967 -26.86924 -24.88336 -24.35357 -23.75482 -22.29330 -21.64906 -21.36005 -20.40574 -18.85809 -18.07678 -17.67548 -17.28234 -16.96321 -16.70440 -16.60459 -16.05704 -15.79158 -15.60189 -15.38259 -15.21911 -14.86329 -14.64920 -14.45592 -14.14871 -14.12166 -13.92095 -13.76004 -13.68295 -13.55972 -13.35427 -13.24796 -13.08069 -12.99346 -12.80321 -12.59968 -12.32818 -12.25652 -12.08862 -11.96284 -11.74975 -11.70200 -11.51978 -11.29521 -10.72791 -10.67939 -10.48331 -10.02739 -9.94220 -9.52406 -8.95317 -8.20186 -5.50098 -0.39413 0.14790 1.28303 1.35309 1.45774 1.64260 1.86033 2.39141 2.71294 2.95717 2.99284 3.31016 3.47383 3.65579 3.74329 3.77375 3.92983 3.98046 4.01599 4.12934 4.19292 4.26550 4.31800 4.37904 4.43289 4.49612 4.57095 4.65160 4.72002 4.73468 4.75951 4.77525 4.82651 4.88747 4.89318 4.93764 4.98144 5.03578 5.07168 5.12061 5.19485 5.23936 5.27664 5.29037 5.31629 5.37851 5.53403 5.61597 5.80039 5.82296 6.08171 6.37764 6.70350 6.86870 7.08795 7.58490 7.98749 8.99670 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003240 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.054760 B = 8638.794398 C = 9782.985822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.143 4.143 4 C 0.116 3.884 5 C -0.101 4.101 6 N -0.465 5.465 7 C 0.070 3.930 8 C 0.553 3.447 9 O -0.563 6.563 10 N -0.586 5.586 11 C 0.081 3.919 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.103 4.103 15 H 0.042 0.958 16 C 0.155 3.845 17 N -0.621 5.621 18 C -0.248 4.248 19 H 0.054 0.946 20 C -0.036 4.036 21 N -0.957 5.957 22 Si 0.945 3.055 23 H -0.286 1.286 24 H -0.306 1.306 25 H -0.255 1.255 26 C 0.119 3.881 27 C -0.100 4.100 28 C 0.159 3.841 29 H 0.081 0.919 30 C -0.138 4.138 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.046 0.954 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.262 0.738 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.068 0.932 50 H 0.045 0.955 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 33.987 3.220 34.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.162 4.162 4 C -0.023 4.023 5 C -0.158 4.158 6 N -0.179 5.179 7 C -0.066 4.066 8 C 0.341 3.659 9 O -0.442 6.442 10 N -0.316 5.316 11 C -0.039 4.039 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.124 4.124 15 H 0.061 0.939 16 C 0.030 3.970 17 N -0.345 5.345 18 C -0.378 4.378 19 H 0.072 0.928 20 C -0.230 4.230 21 N -0.603 5.603 22 Si 0.774 3.226 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.179 1.179 26 C -0.006 4.006 27 C -0.139 4.139 28 C 0.056 3.944 29 H 0.099 0.901 30 C -0.159 4.159 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.195 0.805 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.064 0.936 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.915 33.259 3.327 34.132 hybrid contribution -0.971 -1.637 0.575 1.988 sum -7.886 31.622 3.902 32.823 Atomic orbital electron populations 1.20924 0.87510 1.04641 1.04112 1.20706 0.98656 0.91774 0.94022 1.22484 0.94454 0.99841 0.99423 1.22147 0.92459 0.94309 0.93400 1.20860 1.00253 0.90149 1.04552 1.67421 1.39408 0.97793 1.13299 1.20929 0.91987 0.91673 1.02007 1.18531 0.82346 0.87853 0.77150 1.90852 1.70507 1.31331 1.51561 1.48136 1.06020 1.12629 1.64860 1.22984 0.98767 0.85950 0.96235 1.21946 0.98181 0.99228 0.97231 1.21504 0.97543 0.92778 1.02641 1.21876 0.97798 0.96573 0.96184 0.93932 1.21097 0.91793 0.85532 0.98589 1.44533 1.45858 1.09419 1.34671 1.18890 1.41595 0.83807 0.93489 0.92829 1.25858 1.00202 0.95054 1.01929 1.69977 1.49853 1.03418 1.37047 0.85925 0.78097 0.75949 0.82636 1.21330 1.23428 1.17932 1.21522 0.92081 0.97220 0.89792 1.22183 0.96215 0.93799 1.01728 1.21138 0.91950 0.83583 0.97690 0.90126 1.22043 0.93478 1.00486 0.99937 0.89208 0.91114 0.88371 0.80500 0.88742 0.88041 0.90407 0.90563 0.83903 0.93552 0.87543 0.90692 0.90150 0.93694 0.91998 0.92958 0.94686 0.93799 0.91370 0.93590 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.06 71.24 0.72 -0.35 16 2 C -0.04 -0.68 5.91 -19.69 -0.12 -0.80 16 3 C -0.14 -1.64 9.45 22.44 0.21 -1.43 16 4 C 0.12 1.66 6.78 42.68 0.29 1.95 16 5 C -0.10 -0.65 10.17 71.23 0.72 0.08 16 6 N -0.46 -9.89 6.15 -173.10 -1.06 -10.96 16 7 C 0.07 1.90 6.54 41.91 0.27 2.17 16 8 C 0.55 19.05 7.56 86.88 0.66 19.71 16 9 O -0.56 -23.58 11.96 -3.79 -0.05 -23.63 16 10 N -0.59 -18.34 2.97 -798.36 -2.37 -20.71 16 11 C 0.08 1.84 5.81 86.31 0.50 2.35 16 12 C -0.13 -2.64 6.07 30.68 0.19 -2.45 16 13 C -0.11 -2.58 5.25 30.58 0.16 -2.42 16 14 C -0.10 -3.58 2.21 -10.75 -0.02 -3.60 16 15 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.15 6.26 5.86 86.28 0.51 6.77 16 17 N -0.62 -31.80 2.80 -698.96 -1.96 -33.76 16 18 C -0.25 -15.07 10.03 84.04 0.84 -14.22 16 19 H 0.05 3.50 8.05 -2.91 -0.02 3.48 16 20 C -0.04 -2.24 5.22 84.86 0.44 -1.79 16 21 N -0.96 -63.53 13.97 21.65 0.30 -63.23 16 22 Si 0.94 50.09 24.33 68.60 1.67 51.76 16 23 H -0.29 -14.90 6.68 99.48 0.66 -14.24 16 24 H -0.31 -16.10 7.11 99.48 0.71 -15.40 16 25 H -0.26 -12.74 6.51 99.48 0.65 -12.10 16 26 C 0.12 5.82 4.19 86.41 0.36 6.18 16 27 C -0.10 -4.39 3.80 30.66 0.12 -4.27 16 28 C 0.16 5.65 2.63 45.01 0.12 5.77 16 29 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 30 C -0.14 -3.29 9.33 22.61 0.21 -3.08 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 33 H 0.10 0.44 8.10 -2.39 -0.02 0.42 16 34 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.10 0.17 8.08 -2.39 -0.02 0.15 16 37 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.14 3.07 4.23 -45.47 -0.19 2.88 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.06 2.52 7.93 -2.38 -0.02 2.50 16 46 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 47 H 0.04 1.62 6.96 -2.39 -0.02 1.60 16 48 H 0.04 2.39 4.48 -2.39 -0.01 2.38 16 49 H 0.07 3.00 6.60 -2.39 -0.02 2.98 16 50 H 0.05 2.31 7.01 -2.39 -0.02 2.29 16 51 H 0.13 3.43 7.68 -2.91 -0.02 3.41 16 Total: -1.00 -80.94 382.49 3.35 -77.59 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.64 Total: 12.39 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.18 Total: 10.55 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -5.09 Total: -128.66 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 1.67 Total: 51.76 kcal Total: -80.94 3.35 -77.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021617289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.340 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds