Wall clock time and date at job start Wed Apr 1 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38623 * 120.75898 * 2 1 4 4 C 1.38556 * 119.35338 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.55264 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.89996 * 359.74676 * 4 3 2 7 7 C 1.32711 * 121.64368 * 0.52390 * 6 4 3 8 8 C 1.48170 * 119.72397 * 179.75341 * 7 6 4 9 9 O 1.21512 * 120.00205 * 202.92843 * 8 7 6 10 10 N 1.34776 * 119.99608 * 22.92959 * 8 7 6 11 11 C 1.46943 * 120.84880 * 358.83102 * 10 8 7 12 12 C 1.53148 * 109.01905 * 126.00128 * 11 10 8 13 13 C 1.53108 * 109.47545 * 54.08363 * 12 11 10 14 14 C 1.52845 * 109.35174 * 299.34560 * 13 12 11 15 15 H 1.09002 * 108.59224 * 302.87360 * 14 13 12 16 16 C 1.52771 * 110.21411 * 183.23963 * 14 13 12 17 17 N 1.46892 * 109.19175 * 292.63317 * 16 14 13 18 18 C 1.36936 * 120.77456 * 126.67843 * 17 16 14 19 19 H 1.08009 * 119.99873 * 329.07562 * 18 17 16 20 20 C 1.38811 * 120.00212 * 149.07550 * 18 17 16 21 21 N 1.31614 * 119.99867 * 320.18022 * 20 18 17 22 22 Si 1.86801 * 120.00031 * 140.18553 * 20 18 17 23 23 H 1.48506 * 109.47094 * 94.99838 * 22 20 18 24 24 H 1.48500 * 109.46894 * 214.99437 * 22 20 18 25 25 H 1.48497 * 109.47297 * 334.99633 * 22 20 18 26 26 C 1.46969 * 118.45220 * 306.65388 * 17 16 14 27 27 C 1.53089 * 108.61709 * 54.31938 * 26 17 16 28 28 C 1.47313 * 120.83916 * 178.85903 * 10 8 7 29 29 H 1.08993 * 110.67597 * 355.40611 * 28 10 8 30 30 C 1.38597 * 120.75001 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46894 * 270.02227 * 1 2 3 32 32 H 1.09003 * 109.47266 * 30.01477 * 1 2 3 33 33 H 1.09000 * 109.47869 * 150.02174 * 1 2 3 34 34 H 1.07993 * 120.32213 * 359.96511 * 3 2 1 35 35 H 1.09001 * 109.46910 * 90.00121 * 5 4 3 36 36 H 1.08994 * 109.47414 * 210.00213 * 5 4 3 37 37 H 1.09003 * 109.46802 * 330.00687 * 5 4 3 38 38 H 1.08997 * 109.54681 * 245.86724 * 11 10 8 39 39 H 1.09004 * 109.54269 * 6.04831 * 11 10 8 40 40 H 1.09002 * 109.46463 * 174.08247 * 12 11 10 41 41 H 1.08994 * 109.47151 * 294.08133 * 12 11 10 42 42 H 1.09009 * 109.48647 * 179.38405 * 13 12 11 43 43 H 1.09001 * 109.49559 * 59.31269 * 13 12 11 44 44 H 1.09005 * 109.51492 * 52.54712 * 16 14 13 45 45 H 1.08993 * 109.52241 * 172.66303 * 16 14 13 46 46 H 0.97000 * 120.00064 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.61470 * 174.06222 * 26 17 16 48 48 H 1.09004 * 109.61376 * 294.58426 * 26 17 16 49 49 H 1.08996 * 109.45122 * 64.69146 * 27 26 17 50 50 H 1.09007 * 109.45494 * 184.64395 * 27 26 17 51 51 H 1.07994 * 120.47216 * 0.03924 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1572 0.0005 5 6 4.3763 2.4495 0.0011 6 7 4.2487 0.0124 0.0060 7 6 3.6081 -1.1499 0.0009 8 6 4.3804 -2.4144 0.0019 9 8 3.8719 -3.4373 -0.4123 10 7 5.6470 -2.4299 0.4623 11 6 6.2889 -1.1989 0.9438 12 6 6.8209 -1.4346 2.3604 13 6 7.7289 -2.6674 2.3662 14 6 6.9249 -3.8907 1.9268 15 1 6.0703 -4.0030 2.5941 16 6 7.7912 -5.1468 2.0024 17 7 8.8523 -5.0632 0.9901 18 6 10.1670 -5.2228 1.3383 19 1 10.5065 -4.9217 2.3184 20 6 11.0635 -5.7716 0.4316 21 7 10.6954 -6.7807 -0.3290 22 14 12.7922 -5.0781 0.2911 23 1 13.7146 -5.8714 1.1426 24 1 13.2403 -5.1484 -1.1229 25 1 12.7961 -3.6632 0.7419 26 6 8.4701 -4.8047 -0.4053 27 6 7.6185 -3.5333 -0.4512 28 6 6.4233 -3.6815 0.4951 29 1 5.8058 -4.5255 0.1881 30 6 2.2156 -1.1911 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3635 -0.8901 -0.5135 34 1 1.6937 2.1365 -0.0006 35 1 4.5628 2.7609 1.0290 36 1 5.3266 2.3035 -0.5124 37 1 3.8001 3.2191 -0.5127 38 1 7.1149 -0.9359 0.2831 39 1 5.5600 -0.3886 0.9566 40 1 7.3895 -0.5630 2.6846 41 1 5.9845 -1.5963 3.0404 42 1 8.1164 -2.8289 3.3722 43 1 8.5589 -2.5110 1.6772 44 1 8.2386 -5.2215 2.9936 45 1 7.1753 -6.0260 1.8137 46 1 11.3217 -7.1640 -0.9628 47 1 9.3660 -4.6670 -1.0106 48 1 7.8924 -5.6460 -0.7883 49 1 8.2226 -2.6804 -0.1422 50 1 7.2585 -3.3740 -1.4677 51 1 1.6957 -2.1377 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021617290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:10 Heat of formation + Delta-G solvation = 29.830707 kcal Electronic energy + Delta-G solvation = -31328.069205 eV Core-core repulsion = 27420.972033 eV Total energy + Delta-G solvation = -3907.097172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.14036 -39.79047 -37.92994 -35.57746 -34.55071 -33.23255 -32.53602 -32.18843 -30.01072 -29.78614 -28.40670 -27.83157 -25.61481 -25.48992 -23.77914 -22.35137 -21.96295 -21.54858 -21.32075 -19.53933 -17.80849 -17.42826 -16.71399 -16.56114 -16.18129 -15.89572 -15.27586 -14.95151 -14.54757 -14.38871 -14.31016 -13.92557 -13.74951 -13.61023 -13.45228 -13.28426 -13.07039 -12.99223 -12.74383 -12.61247 -12.53095 -12.40200 -12.14829 -12.11732 -11.94247 -11.48756 -11.27277 -10.88817 -10.74333 -10.60347 -10.49038 -10.30244 -10.13045 -10.03029 -9.94255 -9.79429 -9.71426 -9.45376 -9.24347 -8.96549 -8.30880 -8.17886 -6.74141 -5.86636 -3.12462 0.48370 0.86991 2.69976 3.07951 3.38689 3.49596 3.53855 3.54673 3.89547 4.22322 4.34639 4.54349 4.66139 4.75755 4.89772 5.00236 5.12804 5.15378 5.19572 5.21222 5.26770 5.31568 5.34606 5.39861 5.43808 5.47784 5.54837 5.65312 5.68827 5.76332 5.83418 5.91586 5.96594 6.06897 6.13621 6.22142 6.27072 6.37852 6.39855 6.47561 6.53452 6.58085 6.62431 6.87832 6.89991 6.97506 6.99768 7.15580 7.35873 7.48929 7.70118 7.90569 8.28825 8.42420 9.15263 9.85072 10.48435 11.16803 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002838 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.024371 B = 9864.136542 C =10359.979978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.157 4.157 4 C 0.123 3.877 5 C -0.105 4.105 6 N -0.452 5.452 7 C 0.100 3.900 8 C 0.564 3.436 9 O -0.540 6.540 10 N -0.579 5.579 11 C 0.076 3.924 12 C -0.134 4.134 13 C -0.108 4.108 14 C -0.106 4.106 15 H 0.056 0.944 16 C 0.152 3.848 17 N -0.582 5.582 18 C -0.275 4.275 19 H 0.063 0.937 20 C 0.024 3.976 21 N -0.863 5.863 22 Si 0.868 3.132 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.174 3.826 27 C -0.145 4.145 28 C 0.153 3.847 29 H 0.095 0.905 30 C -0.123 4.123 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.135 0.865 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.022 0.978 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 19.460 2.097 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.177 4.177 4 C -0.015 4.015 5 C -0.162 4.162 6 N -0.166 5.166 7 C -0.038 4.038 8 C 0.350 3.650 9 O -0.418 6.418 10 N -0.309 5.309 11 C -0.047 4.047 12 C -0.173 4.173 13 C -0.146 4.146 14 C -0.127 4.127 15 H 0.075 0.925 16 C 0.025 3.975 17 N -0.305 5.305 18 C -0.403 4.403 19 H 0.081 0.919 20 C -0.179 4.179 21 N -0.502 5.502 22 Si 0.696 3.304 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.047 3.953 27 C -0.185 4.185 28 C 0.051 3.949 29 H 0.113 0.887 30 C -0.144 4.144 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.864 18.753 1.761 25.960 hybrid contribution 0.132 0.287 -0.186 0.367 sum -17.732 19.040 1.575 26.066 Atomic orbital electron populations 1.20840 0.89684 1.03635 1.03124 1.20342 0.97087 0.92515 0.95256 1.22003 0.94712 0.98797 1.02226 1.21465 0.91339 0.94086 0.94654 1.20749 1.00536 0.91538 1.03396 1.67470 1.39076 0.97701 1.12364 1.21280 0.91762 0.92140 0.98604 1.17899 0.81630 0.86696 0.78769 1.90778 1.69616 1.33205 1.48163 1.48375 1.11721 1.10876 1.59917 1.22780 0.99839 0.87783 0.94254 1.21980 0.99433 0.99090 0.96754 1.21499 0.98325 0.93034 1.01697 1.21818 0.98214 0.97917 0.94783 0.92510 1.20809 0.90215 0.92360 0.94075 1.44028 1.02069 1.81947 1.02426 1.18838 0.82918 1.36887 1.01701 0.91894 1.24839 0.97388 0.94885 1.00776 1.70424 1.36402 1.18066 1.25318 0.86844 0.86115 0.80346 0.77135 1.21439 1.21555 1.20199 1.20651 0.96372 0.91506 0.86808 1.22521 0.96494 1.02075 0.97376 1.21393 0.91966 0.85352 0.96190 0.88721 1.21962 0.93667 0.99523 0.99272 0.90278 0.90827 0.90645 0.84485 0.90109 0.90036 0.90553 0.91615 0.84902 0.91455 0.92762 0.92465 0.90143 0.92319 0.96354 0.93668 0.91546 0.95993 0.91569 0.93134 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.06 36.00 0.36 -0.28 16 2 C -0.04 -0.38 5.91 -104.35 -0.62 -1.00 16 3 C -0.16 -1.24 9.45 -39.32 -0.37 -1.61 16 4 C 0.12 1.16 6.78 -82.60 -0.56 0.60 16 5 C -0.10 -0.66 10.17 36.01 0.37 -0.29 16 6 N -0.45 -5.56 6.31 -6.06 -0.04 -5.60 16 7 C 0.10 1.38 6.45 -83.01 -0.54 0.84 16 8 C 0.56 9.58 7.61 -12.18 -0.09 9.49 16 9 O -0.54 -10.67 16.03 5.36 0.09 -10.59 16 10 N -0.58 -9.61 2.66 -165.86 -0.44 -10.05 16 11 C 0.08 1.08 5.54 -3.72 -0.02 1.06 16 12 C -0.13 -1.84 6.08 -26.60 -0.16 -2.00 16 13 C -0.11 -1.79 4.86 -26.76 -0.13 -1.92 16 14 C -0.11 -1.92 2.45 -90.74 -0.22 -2.14 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.15 3.24 5.90 -3.95 -0.02 3.22 16 17 N -0.58 -14.32 2.63 -172.63 -0.45 -14.78 16 18 C -0.28 -7.47 9.36 -15.06 -0.14 -7.62 16 19 H 0.06 1.71 8.06 -52.48 -0.42 1.29 16 20 C 0.02 0.66 4.21 -17.43 -0.07 0.59 16 21 N -0.86 -25.26 13.06 55.49 0.72 -24.53 16 22 Si 0.87 21.21 29.69 -169.99 -5.05 16.16 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.17 4.09 5.69 -3.74 -0.02 4.07 16 27 C -0.14 -2.85 5.02 -26.60 -0.13 -2.98 16 28 C 0.15 2.84 2.63 -67.33 -0.18 2.66 16 29 H 0.09 1.95 7.10 -51.93 -0.37 1.58 16 30 C -0.12 -1.43 9.33 -39.05 -0.36 -1.79 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.07 0.97 7.25 -51.93 -0.38 0.59 16 39 H 0.13 1.75 3.97 -78.14 -0.31 1.44 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.08 1.52 6.16 -51.93 -0.32 1.20 16 44 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.07 1.70 6.92 -51.93 -0.36 1.34 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 1.29 5.33 -51.93 -0.28 1.02 16 50 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.15 1.64 7.82 -52.49 -0.41 1.23 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -31.95 391.81 -10.48 -42.44 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.30 Total: 0.15 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.92 Total: 0.89 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.21 Total: -54.96 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.05 Total: 16.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.95 -10.48 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021617290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.268 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds