Wall clock time and date at job start Wed Apr 1 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38623 * 120.75898 * 2 1 4 4 C 1.38556 * 119.35338 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.55264 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.89996 * 359.74676 * 4 3 2 7 7 C 1.32711 * 121.64368 * 0.52390 * 6 4 3 8 8 C 1.48170 * 119.72397 * 179.75341 * 7 6 4 9 9 O 1.21512 * 120.00205 * 202.92843 * 8 7 6 10 10 N 1.34776 * 119.99608 * 22.92959 * 8 7 6 11 11 C 1.46943 * 120.84880 * 358.83102 * 10 8 7 12 12 C 1.53148 * 109.01905 * 126.00128 * 11 10 8 13 13 C 1.53108 * 109.47545 * 54.08363 * 12 11 10 14 14 C 1.52845 * 109.35174 * 299.34560 * 13 12 11 15 15 H 1.09002 * 108.59224 * 302.87360 * 14 13 12 16 16 C 1.52771 * 110.21411 * 183.23963 * 14 13 12 17 17 N 1.46892 * 109.19175 * 292.63317 * 16 14 13 18 18 C 1.36936 * 120.77456 * 126.67843 * 17 16 14 19 19 H 1.08009 * 119.99873 * 329.07562 * 18 17 16 20 20 C 1.38811 * 120.00212 * 149.07550 * 18 17 16 21 21 N 1.31614 * 119.99867 * 320.18022 * 20 18 17 22 22 Si 1.86801 * 120.00031 * 140.18553 * 20 18 17 23 23 H 1.48506 * 109.47094 * 94.99838 * 22 20 18 24 24 H 1.48500 * 109.46894 * 214.99437 * 22 20 18 25 25 H 1.48497 * 109.47297 * 334.99633 * 22 20 18 26 26 C 1.46969 * 118.45220 * 306.65388 * 17 16 14 27 27 C 1.53089 * 108.61709 * 54.31938 * 26 17 16 28 28 C 1.47313 * 120.83916 * 178.85903 * 10 8 7 29 29 H 1.08993 * 110.67597 * 355.40611 * 28 10 8 30 30 C 1.38597 * 120.75001 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46894 * 270.02227 * 1 2 3 32 32 H 1.09003 * 109.47266 * 30.01477 * 1 2 3 33 33 H 1.09000 * 109.47869 * 150.02174 * 1 2 3 34 34 H 1.07993 * 120.32213 * 359.96511 * 3 2 1 35 35 H 1.09001 * 109.46910 * 90.00121 * 5 4 3 36 36 H 1.08994 * 109.47414 * 210.00213 * 5 4 3 37 37 H 1.09003 * 109.46802 * 330.00687 * 5 4 3 38 38 H 1.08997 * 109.54681 * 245.86724 * 11 10 8 39 39 H 1.09004 * 109.54269 * 6.04831 * 11 10 8 40 40 H 1.09002 * 109.46463 * 174.08247 * 12 11 10 41 41 H 1.08994 * 109.47151 * 294.08133 * 12 11 10 42 42 H 1.09009 * 109.48647 * 179.38405 * 13 12 11 43 43 H 1.09001 * 109.49559 * 59.31269 * 13 12 11 44 44 H 1.09005 * 109.51492 * 52.54712 * 16 14 13 45 45 H 1.08993 * 109.52241 * 172.66303 * 16 14 13 46 46 H 0.97000 * 120.00064 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.61470 * 174.06222 * 26 17 16 48 48 H 1.09004 * 109.61376 * 294.58426 * 26 17 16 49 49 H 1.08996 * 109.45122 * 64.69146 * 27 26 17 50 50 H 1.09007 * 109.45494 * 184.64395 * 27 26 17 51 51 H 1.07994 * 120.47216 * 0.03924 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1572 0.0005 5 6 4.3763 2.4495 0.0011 6 7 4.2487 0.0124 0.0060 7 6 3.6081 -1.1499 0.0009 8 6 4.3804 -2.4144 0.0019 9 8 3.8719 -3.4373 -0.4123 10 7 5.6470 -2.4299 0.4623 11 6 6.2889 -1.1989 0.9438 12 6 6.8209 -1.4346 2.3604 13 6 7.7289 -2.6674 2.3662 14 6 6.9249 -3.8907 1.9268 15 1 6.0703 -4.0030 2.5941 16 6 7.7912 -5.1468 2.0024 17 7 8.8523 -5.0632 0.9901 18 6 10.1670 -5.2228 1.3383 19 1 10.5065 -4.9217 2.3184 20 6 11.0635 -5.7716 0.4316 21 7 10.6954 -6.7807 -0.3290 22 14 12.7922 -5.0781 0.2911 23 1 13.7146 -5.8714 1.1426 24 1 13.2403 -5.1484 -1.1229 25 1 12.7961 -3.6632 0.7419 26 6 8.4701 -4.8047 -0.4053 27 6 7.6185 -3.5333 -0.4512 28 6 6.4233 -3.6815 0.4951 29 1 5.8058 -4.5255 0.1881 30 6 2.2156 -1.1911 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3635 -0.8901 -0.5135 34 1 1.6937 2.1365 -0.0006 35 1 4.5628 2.7609 1.0290 36 1 5.3266 2.3035 -0.5124 37 1 3.8001 3.2191 -0.5127 38 1 7.1149 -0.9359 0.2831 39 1 5.5600 -0.3886 0.9566 40 1 7.3895 -0.5630 2.6846 41 1 5.9845 -1.5963 3.0404 42 1 8.1164 -2.8289 3.3722 43 1 8.5589 -2.5110 1.6772 44 1 8.2386 -5.2215 2.9936 45 1 7.1753 -6.0260 1.8137 46 1 11.3217 -7.1640 -0.9628 47 1 9.3660 -4.6670 -1.0106 48 1 7.8924 -5.6460 -0.7883 49 1 8.2226 -2.6804 -0.1422 50 1 7.2585 -3.3740 -1.4677 51 1 1.6957 -2.1377 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021617290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:09 Heat of formation + Delta-G solvation = 12.555643 kcal Electronic energy + Delta-G solvation = -31328.818308 eV Core-core repulsion = 27420.972033 eV Total energy + Delta-G solvation = -3907.846275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.17793 -40.98079 -39.36329 -37.16353 -35.35193 -34.49441 -33.84384 -33.65638 -31.78492 -31.38461 -29.07602 -28.37056 -27.33568 -26.79803 -25.15577 -23.83599 -23.59514 -22.87788 -22.17614 -20.80976 -19.45562 -18.53379 -18.43792 -17.57866 -17.13963 -17.07001 -16.70407 -16.37172 -16.13611 -15.86503 -15.44645 -15.19670 -15.02727 -14.88459 -14.55676 -14.29641 -14.24578 -14.10269 -14.01870 -13.63753 -13.60984 -13.41249 -13.30876 -13.07817 -13.01591 -12.90287 -12.64467 -12.60189 -12.44819 -12.28629 -12.05384 -11.94980 -11.80898 -11.51940 -11.45627 -11.34621 -11.06092 -10.51861 -10.40751 -10.04729 -9.97293 -9.57892 -8.81169 -7.97051 -5.27076 -0.36995 0.15067 1.42867 1.49163 1.59637 1.59956 1.83233 2.51020 2.66014 2.97925 3.08087 3.47534 3.58815 3.66661 3.74974 3.87767 3.97536 4.01324 4.03291 4.13846 4.22578 4.27225 4.34852 4.44540 4.49017 4.58068 4.65167 4.67782 4.73586 4.77279 4.79434 4.85731 4.88336 4.91185 4.96641 5.00924 5.03133 5.08426 5.12949 5.16689 5.19715 5.23472 5.28673 5.29612 5.34652 5.41456 5.56160 5.63339 5.73911 5.78443 6.33256 6.36449 6.69707 7.02507 7.06245 7.79542 8.40965 9.04816 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002838 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.024371 B = 9864.136542 C =10359.979978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.142 4.142 4 C 0.117 3.883 5 C -0.103 4.103 6 N -0.471 5.471 7 C 0.073 3.927 8 C 0.558 3.442 9 O -0.581 6.581 10 N -0.580 5.580 11 C 0.075 3.925 12 C -0.124 4.124 13 C -0.102 4.102 14 C -0.095 4.095 15 H 0.069 0.931 16 C 0.150 3.850 17 N -0.593 5.593 18 C -0.280 4.280 19 H 0.064 0.936 20 C -0.026 4.026 21 N -0.906 5.906 22 Si 0.938 3.062 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.182 3.818 27 C -0.126 4.126 28 C 0.158 3.842 29 H 0.068 0.932 30 C -0.135 4.135 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.003 0.997 46 H 0.252 0.748 47 H 0.042 0.958 48 H -0.004 1.004 49 H 0.073 0.927 50 H 0.052 0.948 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 23.993 3.222 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.161 4.161 4 C -0.022 4.022 5 C -0.160 4.160 6 N -0.185 5.185 7 C -0.063 4.063 8 C 0.346 3.654 9 O -0.462 6.462 10 N -0.308 5.308 11 C -0.046 4.046 12 C -0.162 4.162 13 C -0.140 4.140 14 C -0.116 4.116 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.316 5.316 18 C -0.409 4.409 19 H 0.082 0.918 20 C -0.225 4.225 21 N -0.548 5.548 22 Si 0.764 3.236 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.055 3.945 27 C -0.166 4.166 28 C 0.055 3.945 29 H 0.086 0.914 30 C -0.156 4.156 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.196 0.804 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.169 0.831 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.021 0.979 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.290 23.324 2.913 30.407 hybrid contribution 0.449 -1.081 -0.534 1.286 sum -18.841 22.243 2.379 29.248 Atomic orbital electron populations 1.20930 0.87226 1.04707 1.04242 1.20714 0.98753 0.91631 0.93812 1.22469 0.94188 1.00048 0.99392 1.22092 0.92600 0.94031 0.93527 1.20867 1.00144 0.90406 1.04577 1.67257 1.39791 0.98010 1.13459 1.20779 0.92099 0.91310 1.02122 1.18493 0.81577 0.87687 0.77610 1.90738 1.70485 1.35136 1.49836 1.48359 1.11780 1.10628 1.60082 1.23000 1.00072 0.87135 0.94386 1.21928 0.99239 0.98520 0.96492 1.21424 0.97869 0.93434 1.01238 1.21649 0.98108 0.97162 0.94677 0.91301 1.20910 0.89721 0.93635 0.93311 1.44212 1.02254 1.82019 1.03128 1.19125 0.84108 1.35852 1.01843 0.91847 1.25592 1.01051 0.94951 1.00949 1.70500 1.37934 1.19645 1.26697 0.85764 0.81409 0.79750 0.76637 1.21113 1.21979 1.19192 1.20447 0.95467 0.92421 0.86162 1.22260 0.96404 0.99953 0.97997 1.21059 0.91259 0.86028 0.96129 0.91417 1.22024 0.93004 1.00646 0.99942 0.88974 0.88510 0.90883 0.80422 0.88652 0.90928 0.87871 0.92072 0.83138 0.88691 0.92001 0.91800 0.92356 0.91980 0.97889 0.93893 0.93976 0.98630 0.90810 0.92933 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.06 71.24 0.72 -0.16 16 2 C -0.04 -0.60 5.91 -19.69 -0.12 -0.72 16 3 C -0.14 -1.62 9.45 22.44 0.21 -1.41 16 4 C 0.12 1.80 6.78 42.68 0.29 2.09 16 5 C -0.10 -0.86 10.17 71.24 0.72 -0.14 16 6 N -0.47 -10.77 6.31 -173.08 -1.09 -11.87 16 7 C 0.07 1.99 6.45 41.91 0.27 2.26 16 8 C 0.56 19.53 7.61 86.88 0.66 20.20 16 9 O -0.58 -24.32 16.03 -3.75 -0.06 -24.38 16 10 N -0.58 -19.44 2.66 -796.97 -2.12 -21.56 16 11 C 0.08 2.04 5.54 86.34 0.48 2.52 16 12 C -0.12 -3.10 6.08 30.68 0.19 -2.91 16 13 C -0.10 -3.27 4.86 30.58 0.15 -3.12 16 14 C -0.10 -3.48 2.45 -10.87 -0.03 -3.50 16 15 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 16 C 0.15 6.61 5.90 86.23 0.51 7.12 16 17 N -0.59 -30.27 2.63 -700.07 -1.84 -32.11 16 18 C -0.28 -15.53 9.36 84.03 0.79 -14.75 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 20 C -0.03 -1.47 4.21 84.86 0.36 -1.11 16 21 N -0.91 -54.99 13.06 21.65 0.28 -54.71 16 22 Si 0.94 44.55 29.69 68.60 2.04 46.59 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.18 9.05 5.69 86.32 0.49 9.55 16 27 C -0.13 -5.17 5.02 30.68 0.15 -5.01 16 28 C 0.16 6.11 2.63 44.94 0.12 6.23 16 29 H 0.07 2.99 7.10 -2.39 -0.02 2.97 16 30 C -0.13 -3.05 9.33 22.61 0.21 -2.83 16 31 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.33 8.10 -2.39 -0.02 0.31 16 33 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 34 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.33 8.08 -2.39 -0.02 0.31 16 38 H 0.06 1.72 7.25 -2.39 -0.02 1.70 16 39 H 0.15 3.68 3.97 -54.14 -0.21 3.47 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.06 2.15 6.16 -2.39 -0.01 2.14 16 44 H 0.06 2.65 7.93 -2.38 -0.02 2.63 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.04 2.27 6.92 -2.38 -0.02 2.25 16 48 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 49 H 0.07 2.92 5.33 -2.39 -0.01 2.91 16 50 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 51 H 0.14 3.19 7.82 -2.91 -0.02 3.17 16 Total: -1.00 -73.43 391.81 4.10 -69.33 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.72 Total: 14.41 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.17 Total: 14.29 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -4.77 Total: -120.24 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.04 Total: 46.59 kcal Total: -73.43 4.10 -69.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021617290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.886 kcal (2) G-P(sol) polarization free energy of solvation -73.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds