Wall clock time and date at job start Wed Apr 1 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38600 * 120.32335 * 2 1 4 4 N 1.31499 * 120.90089 * 180.02562 * 3 2 1 5 5 C 1.32744 * 121.64087 * 359.97438 * 4 3 2 6 6 C 1.48171 * 119.72050 * 180.27213 * 5 4 3 7 7 O 1.21525 * 119.99657 * 157.99165 * 6 5 4 8 8 N 1.34776 * 120.00120 * 337.99407 * 6 5 4 9 9 C 1.47058 * 120.84256 * 0.23379 * 8 6 5 10 10 C 1.53130 * 109.03608 * 233.41446 * 9 8 6 11 11 C 1.53146 * 109.61701 * 305.98551 * 10 9 8 12 12 C 1.52815 * 109.27152 * 60.85283 * 11 10 9 13 13 H 1.08996 * 109.47294 * 58.03505 * 12 11 10 14 14 C 1.53069 * 110.33975 * 178.58064 * 12 11 10 15 15 N 1.47073 * 108.32772 * 175.44231 * 14 12 11 16 16 C 1.36939 * 120.46249 * 126.71317 * 15 14 12 17 17 H 1.07995 * 119.99848 * 210.35475 * 16 15 14 18 18 C 1.38814 * 120.00142 * 30.36453 * 16 15 14 19 19 N 1.31619 * 119.99761 * 16.21496 * 18 16 15 20 20 Si 1.86802 * 119.99867 * 196.21442 * 18 16 15 21 21 H 1.48494 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46727 * 119.99837 * 20 18 16 23 23 H 1.48493 * 109.46949 * 239.99754 * 20 18 16 24 24 C 1.46859 * 119.06824 * 306.68654 * 15 14 12 25 25 C 1.53314 * 109.10448 * 52.64253 * 24 15 14 26 26 C 1.46711 * 120.84078 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.52888 * 245.23497 * 26 8 6 28 28 C 1.39276 * 120.55718 * 0.02562 * 5 4 3 29 29 C 1.38582 * 120.32337 * 180.02562 * 2 1 3 30 30 C 1.50703 * 120.75719 * 359.96316 * 29 2 1 31 31 H 1.09000 * 109.47428 * 269.98105 * 1 2 3 32 32 H 1.08998 * 109.47311 * 29.98178 * 1 2 3 33 33 H 1.08999 * 109.47028 * 149.98089 * 1 2 3 34 34 H 1.07998 * 119.55286 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.54720 * 353.27743 * 9 8 6 36 36 H 1.08998 * 109.54794 * 113.45995 * 9 8 6 37 37 H 1.08996 * 109.45214 * 66.03402 * 10 9 8 38 38 H 1.09004 * 109.45085 * 185.97426 * 10 9 8 39 39 H 1.08994 * 109.50695 * 180.79040 * 11 10 9 40 40 H 1.09002 * 109.50222 * 300.91163 * 11 10 9 41 41 H 1.09000 * 109.69222 * 295.14823 * 14 12 11 42 42 H 1.08998 * 109.68919 * 55.69697 * 14 12 11 43 43 H 0.97003 * 119.99261 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.52807 * 172.52469 * 24 15 14 45 45 H 1.08998 * 109.53368 * 292.74919 * 24 15 14 46 46 H 1.09004 * 109.55855 * 65.73680 * 25 24 15 47 47 H 1.08998 * 109.56023 * 185.94777 * 25 24 15 48 48 H 1.07994 * 120.46562 * 179.97438 * 28 5 4 49 49 H 1.08996 * 109.47043 * 270.01498 * 30 29 2 50 50 H 1.09003 * 109.47143 * 30.01949 * 30 29 2 51 51 H 1.09009 * 109.47117 * 150.01706 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0866 -0.0005 6 6 5.7097 0.1512 0.0050 7 8 6.3578 -0.7981 0.3996 8 7 6.3374 1.2627 -0.4275 9 6 5.5714 2.4240 -0.9040 10 6 6.0663 2.8097 -2.3009 11 6 7.5828 3.0208 -2.2689 12 6 8.2643 1.7198 -1.8468 13 1 7.9921 0.9251 -2.5413 14 6 9.7851 1.8935 -1.8408 15 7 10.3899 0.6561 -1.3250 16 6 11.3607 0.0073 -2.0403 17 1 11.4599 -1.0656 -1.9662 18 6 12.2175 0.7285 -2.8604 19 7 12.3204 2.0331 -2.7195 20 14 13.2245 -0.1525 -4.1640 21 1 12.9288 -1.6070 -4.1187 22 1 12.8746 0.3818 -5.5046 23 1 14.6701 0.0676 -3.9052 24 6 9.9383 0.1265 -0.0317 25 6 8.4108 -0.0036 -0.0485 26 6 7.8021 1.3467 -0.4295 27 1 8.1240 2.1136 0.2751 28 6 3.5922 -1.1519 -0.0005 29 6 2.2067 -1.1962 -0.0005 30 6 1.4779 -2.5153 -0.0003 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6647 2.1305 0.0004 35 1 4.5127 2.1687 -0.9500 36 1 5.7152 3.2610 -0.2208 37 1 5.8256 2.0126 -3.0042 38 1 5.5786 3.7319 -2.6169 39 1 7.9311 3.3089 -3.2607 40 1 7.8257 3.8074 -1.5545 41 1 10.1376 2.0793 -2.8554 42 1 10.0565 2.7312 -1.1984 43 1 12.9188 2.5371 -3.2928 44 1 10.3857 -0.8531 0.1370 45 1 10.2374 0.8071 0.7653 46 1 8.1169 -0.7587 -0.7777 47 1 8.0585 -0.2952 0.9409 48 1 4.1695 -2.0646 -0.0010 49 1 1.3025 -2.8333 1.0274 50 1 0.5230 -2.4030 -0.5139 51 1 2.0811 -3.2638 -0.5143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021638368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:59 Heat of formation + Delta-G solvation = 41.122439 kcal Electronic energy + Delta-G solvation = -31246.137800 eV Core-core repulsion = 27339.530275 eV Total energy + Delta-G solvation = -3906.607526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.14555 -39.80736 -37.55636 -35.85089 -34.88614 -32.85309 -32.67338 -32.35454 -30.12658 -29.32426 -28.63324 -27.51479 -25.39001 -24.94972 -23.15524 -22.82932 -22.33704 -22.00053 -20.11338 -19.39534 -19.08253 -17.30442 -16.72041 -16.56646 -15.73999 -15.49868 -15.26755 -15.01259 -14.80607 -14.59322 -14.20920 -13.95014 -13.70624 -13.47345 -13.35978 -13.28144 -13.12799 -13.04921 -12.87620 -12.55060 -12.35044 -12.29102 -12.09033 -11.96093 -11.82173 -11.44720 -10.95366 -10.90207 -10.80038 -10.68637 -10.59804 -10.19408 -10.01165 -9.97034 -9.80741 -9.71009 -9.47986 -9.22527 -9.15110 -8.74138 -8.37991 -8.11236 -6.52785 -5.71816 -3.15325 0.49313 0.91390 2.74987 3.14158 3.41234 3.48915 3.52146 3.62332 4.01928 4.30275 4.38669 4.51220 4.53547 4.55964 4.90232 5.03826 5.09978 5.14532 5.18970 5.24809 5.28186 5.34820 5.39760 5.46621 5.52215 5.54653 5.57882 5.61872 5.70230 5.77954 5.88700 5.95572 5.97889 6.09786 6.18516 6.27909 6.36131 6.41179 6.49450 6.53016 6.59573 6.66604 6.74066 6.88336 7.02916 7.13047 7.27490 7.40439 7.50255 7.69461 7.73989 7.88490 8.39889 8.54784 9.29403 9.92703 10.50837 11.36484 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.002789 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.417654 B =10037.375350 C =10625.415124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.125 4.125 3 C 0.094 3.906 4 N -0.450 5.450 5 C 0.084 3.916 6 C 0.564 3.436 7 O -0.525 6.525 8 N -0.582 5.582 9 C 0.078 3.922 10 C -0.134 4.134 11 C -0.113 4.113 12 C -0.119 4.119 13 H 0.065 0.935 14 C 0.185 3.815 15 N -0.594 5.594 16 C -0.248 4.248 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.139 3.861 25 C -0.119 4.119 26 C 0.155 3.845 27 H 0.067 0.933 28 C -0.110 4.110 29 C -0.050 4.050 30 C -0.119 4.119 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.020 0.980 43 H 0.252 0.748 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.147 0.853 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.726 -0.986 4.769 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.127 4.127 3 C -0.065 4.065 4 N -0.162 5.162 5 C -0.053 4.053 6 C 0.350 3.650 7 O -0.402 6.402 8 N -0.312 5.312 9 C -0.044 4.044 10 C -0.172 4.172 11 C -0.151 4.151 12 C -0.140 4.140 13 H 0.084 0.916 14 C 0.058 3.942 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.012 3.988 25 C -0.158 4.158 26 C 0.053 3.947 27 H 0.085 0.915 28 C -0.131 4.131 29 C -0.058 4.058 30 C -0.175 4.175 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.164 0.836 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.752 -0.615 4.901 26.221 hybrid contribution 0.183 -0.857 -0.808 1.192 sum -25.568 -1.472 4.093 25.936 Atomic orbital electron populations 1.20811 0.90049 1.03407 1.02812 1.20957 0.97649 0.93614 1.00506 1.22822 0.89753 0.97659 0.96282 1.67634 1.07942 1.29259 1.11372 1.21457 0.94875 0.89473 0.99507 1.17945 0.85253 0.83050 0.78767 1.90850 1.64424 1.36889 1.48063 1.48161 1.07656 1.14398 1.61026 1.22752 0.99583 0.87750 0.94324 1.21953 0.97110 1.01023 0.97111 1.21507 0.93839 0.98129 1.01653 1.22329 1.00096 0.96547 0.95030 0.91628 1.20713 0.85205 0.87765 1.00500 1.44098 1.42611 1.27385 1.17499 1.19230 1.07289 0.90628 1.20692 0.91834 1.25089 0.97331 0.95757 1.01455 1.70041 1.39528 1.05729 1.39492 0.86256 0.79723 0.79234 0.81803 1.20251 1.21644 1.21749 1.21134 0.91916 0.97385 0.88321 1.22510 0.96313 0.94488 1.02469 1.21502 0.76302 0.99270 0.97621 0.91470 1.21986 0.94097 0.99067 0.97958 1.20200 0.93257 0.95842 0.96519 1.20889 1.00408 0.93082 1.03135 0.90605 0.90963 0.90849 0.82169 0.84946 0.91969 0.92320 0.91449 0.91839 0.92159 0.89698 0.96243 0.93795 0.92658 0.96819 0.91641 0.90392 0.83567 0.90262 0.90578 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.65 36.01 0.35 -0.16 16 2 C -0.13 -0.98 5.91 -104.36 -0.62 -1.60 16 3 C 0.09 0.83 10.86 -17.56 -0.19 0.64 16 4 N -0.45 -5.41 6.39 -9.80 -0.06 -5.47 16 5 C 0.08 1.16 6.45 -83.01 -0.54 0.62 16 6 C 0.56 9.59 7.54 -12.18 -0.09 9.50 16 7 O -0.53 -10.17 12.10 5.34 0.06 -10.11 16 8 N -0.58 -9.75 2.96 -166.04 -0.49 -10.25 16 9 C 0.08 1.09 5.99 -3.67 -0.02 1.07 16 10 C -0.13 -1.83 6.07 -26.59 -0.16 -1.99 16 11 C -0.11 -1.85 5.24 -26.75 -0.14 -1.99 16 12 C -0.12 -2.37 2.21 -90.33 -0.20 -2.57 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.18 4.50 4.60 -3.69 -0.02 4.48 16 15 N -0.59 -15.61 2.99 -172.25 -0.51 -16.13 16 16 C -0.25 -7.10 9.54 -15.06 -0.14 -7.24 16 17 H 0.06 1.81 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 19 N -0.90 -26.72 11.32 55.49 0.63 -26.09 16 20 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C 0.14 3.21 6.50 -3.68 -0.02 3.19 16 25 C -0.12 -2.46 3.80 -26.60 -0.10 -2.56 16 26 C 0.15 2.95 2.67 -67.49 -0.18 2.77 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 C -0.11 -1.31 9.33 -39.05 -0.36 -1.67 16 29 C -0.05 -0.45 5.91 -104.35 -0.62 -1.07 16 30 C -0.12 -0.70 9.67 36.01 0.35 -0.35 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.07 0.27 6.06 -51.93 -0.31 -0.04 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.71 4.02 -76.74 -0.31 1.40 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 2.30 6.23 -51.93 -0.32 1.98 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.05 1.27 7.93 -51.93 -0.41 0.86 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 1.48 7.32 -51.93 -0.38 1.10 16 47 H 0.08 1.61 6.26 -51.93 -0.33 1.28 16 48 H 0.15 1.72 7.80 -52.49 -0.41 1.31 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.33 6.07 -51.93 -0.32 0.01 16 51 H 0.07 0.43 8.10 -51.92 -0.42 0.01 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -32.71 385.22 -10.65 -43.36 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.25 Total: 0.60 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.80 Total: 1.03 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.44 Total: -57.93 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.06 Total: -10.11 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.71 -10.65 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021638368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.480 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds