Wall clock time and date at job start Wed Apr 1 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38600 * 120.32335 * 2 1 4 4 N 1.31499 * 120.90089 * 180.02562 * 3 2 1 5 5 C 1.32744 * 121.64087 * 359.97438 * 4 3 2 6 6 C 1.48171 * 119.72050 * 180.27213 * 5 4 3 7 7 O 1.21525 * 119.99657 * 157.99165 * 6 5 4 8 8 N 1.34776 * 120.00120 * 337.99407 * 6 5 4 9 9 C 1.47058 * 120.84256 * 0.23379 * 8 6 5 10 10 C 1.53130 * 109.03608 * 233.41446 * 9 8 6 11 11 C 1.53146 * 109.61701 * 305.98551 * 10 9 8 12 12 C 1.52815 * 109.27152 * 60.85283 * 11 10 9 13 13 H 1.08996 * 109.47294 * 58.03505 * 12 11 10 14 14 C 1.53069 * 110.33975 * 178.58064 * 12 11 10 15 15 N 1.47073 * 108.32772 * 175.44231 * 14 12 11 16 16 C 1.36939 * 120.46249 * 126.71317 * 15 14 12 17 17 H 1.07995 * 119.99848 * 210.35475 * 16 15 14 18 18 C 1.38814 * 120.00142 * 30.36453 * 16 15 14 19 19 N 1.31619 * 119.99761 * 16.21496 * 18 16 15 20 20 Si 1.86802 * 119.99867 * 196.21442 * 18 16 15 21 21 H 1.48494 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46727 * 119.99837 * 20 18 16 23 23 H 1.48493 * 109.46949 * 239.99754 * 20 18 16 24 24 C 1.46859 * 119.06824 * 306.68654 * 15 14 12 25 25 C 1.53314 * 109.10448 * 52.64253 * 24 15 14 26 26 C 1.46711 * 120.84078 * 179.97438 * 8 6 5 27 27 H 1.09003 * 109.52888 * 245.23497 * 26 8 6 28 28 C 1.39276 * 120.55718 * 0.02562 * 5 4 3 29 29 C 1.38582 * 120.32337 * 180.02562 * 2 1 3 30 30 C 1.50703 * 120.75719 * 359.96316 * 29 2 1 31 31 H 1.09000 * 109.47428 * 269.98105 * 1 2 3 32 32 H 1.08998 * 109.47311 * 29.98178 * 1 2 3 33 33 H 1.08999 * 109.47028 * 149.98089 * 1 2 3 34 34 H 1.07998 * 119.55286 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.54720 * 353.27743 * 9 8 6 36 36 H 1.08998 * 109.54794 * 113.45995 * 9 8 6 37 37 H 1.08996 * 109.45214 * 66.03402 * 10 9 8 38 38 H 1.09004 * 109.45085 * 185.97426 * 10 9 8 39 39 H 1.08994 * 109.50695 * 180.79040 * 11 10 9 40 40 H 1.09002 * 109.50222 * 300.91163 * 11 10 9 41 41 H 1.09000 * 109.69222 * 295.14823 * 14 12 11 42 42 H 1.08998 * 109.68919 * 55.69697 * 14 12 11 43 43 H 0.97003 * 119.99261 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.52807 * 172.52469 * 24 15 14 45 45 H 1.08998 * 109.53368 * 292.74919 * 24 15 14 46 46 H 1.09004 * 109.55855 * 65.73680 * 25 24 15 47 47 H 1.08998 * 109.56023 * 185.94777 * 25 24 15 48 48 H 1.07994 * 120.46562 * 179.97438 * 28 5 4 49 49 H 1.08996 * 109.47043 * 270.01498 * 30 29 2 50 50 H 1.09003 * 109.47143 * 30.01949 * 30 29 2 51 51 H 1.09009 * 109.47117 * 150.01706 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0866 -0.0005 6 6 5.7097 0.1512 0.0050 7 8 6.3578 -0.7981 0.3996 8 7 6.3374 1.2627 -0.4275 9 6 5.5714 2.4240 -0.9040 10 6 6.0663 2.8097 -2.3009 11 6 7.5828 3.0208 -2.2689 12 6 8.2643 1.7198 -1.8468 13 1 7.9921 0.9251 -2.5413 14 6 9.7851 1.8935 -1.8408 15 7 10.3899 0.6561 -1.3250 16 6 11.3607 0.0073 -2.0403 17 1 11.4599 -1.0656 -1.9662 18 6 12.2175 0.7285 -2.8604 19 7 12.3204 2.0331 -2.7195 20 14 13.2245 -0.1525 -4.1640 21 1 12.9288 -1.6070 -4.1187 22 1 12.8746 0.3818 -5.5046 23 1 14.6701 0.0676 -3.9052 24 6 9.9383 0.1265 -0.0317 25 6 8.4108 -0.0036 -0.0485 26 6 7.8021 1.3467 -0.4295 27 1 8.1240 2.1136 0.2751 28 6 3.5922 -1.1519 -0.0005 29 6 2.2067 -1.1962 -0.0005 30 6 1.4779 -2.5153 -0.0003 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6647 2.1305 0.0004 35 1 4.5127 2.1687 -0.9500 36 1 5.7152 3.2610 -0.2208 37 1 5.8256 2.0126 -3.0042 38 1 5.5786 3.7319 -2.6169 39 1 7.9311 3.3089 -3.2607 40 1 7.8257 3.8074 -1.5545 41 1 10.1376 2.0793 -2.8554 42 1 10.0565 2.7312 -1.1984 43 1 12.9188 2.5371 -3.2928 44 1 10.3857 -0.8531 0.1370 45 1 10.2374 0.8071 0.7653 46 1 8.1169 -0.7587 -0.7777 47 1 8.0585 -0.2952 0.9409 48 1 4.1695 -2.0646 -0.0010 49 1 1.3025 -2.8333 1.0274 50 1 0.5230 -2.4030 -0.5139 51 1 2.0811 -3.2638 -0.5143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021638368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:58 Heat of formation + Delta-G solvation = 22.843245 kcal Electronic energy + Delta-G solvation = -31246.930446 eV Core-core repulsion = 27339.530275 eV Total energy + Delta-G solvation = -3907.400171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20098 -40.96271 -39.06013 -37.41667 -35.75855 -34.45753 -34.07743 -33.39343 -31.90942 -30.91697 -29.40557 -28.29943 -27.17997 -26.31841 -24.46286 -23.90906 -23.73982 -23.27462 -21.44005 -21.19825 -20.32655 -18.73225 -18.22067 -17.74297 -17.02098 -16.68064 -16.54834 -16.36766 -15.95060 -15.75753 -15.54395 -15.28194 -15.20634 -15.11532 -14.58258 -14.24287 -14.11678 -13.89192 -13.83805 -13.67897 -13.58642 -13.47761 -13.42389 -13.20563 -12.87339 -12.75173 -12.70940 -12.52039 -12.42072 -12.15451 -12.09038 -12.05014 -11.76719 -11.67384 -11.54632 -11.12890 -10.68733 -10.55906 -10.40780 -9.99271 -9.87264 -9.51441 -8.65646 -7.90257 -5.38637 -0.35642 0.18205 1.42725 1.43845 1.55686 1.65178 1.89803 2.47970 2.72231 3.07080 3.22802 3.55731 3.59981 3.75574 3.83217 3.87541 3.88833 3.91637 4.01883 4.10779 4.21230 4.27964 4.37109 4.46204 4.54518 4.59337 4.65107 4.70349 4.70800 4.77449 4.84452 4.85861 4.90497 4.94552 4.98538 5.00737 5.05520 5.08056 5.13547 5.16080 5.26337 5.30593 5.36812 5.39570 5.40865 5.47140 5.60399 5.64626 5.70562 5.81646 6.36306 6.42234 6.69844 7.11210 7.12043 7.80632 8.34681 9.15632 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.002789 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.417654 B =10037.375350 C =10625.415124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C 0.092 3.908 4 N -0.463 5.463 5 C 0.056 3.944 6 C 0.556 3.444 7 O -0.563 6.563 8 N -0.585 5.585 9 C 0.077 3.923 10 C -0.124 4.124 11 C -0.109 4.109 12 C -0.105 4.105 13 H 0.042 0.958 14 C 0.195 3.805 15 N -0.612 5.612 16 C -0.268 4.268 17 H 0.058 0.942 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.287 1.287 24 C 0.138 3.862 25 C -0.097 4.097 26 C 0.161 3.839 27 H 0.067 0.933 28 C -0.123 4.123 29 C -0.053 4.053 30 C -0.118 4.118 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.151 0.849 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.003 0.997 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.765 -0.355 4.490 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.067 4.067 4 N -0.176 5.176 5 C -0.079 4.079 6 C 0.344 3.656 7 O -0.442 6.442 8 N -0.315 5.315 9 C -0.044 4.044 10 C -0.162 4.162 11 C -0.147 4.147 12 C -0.126 4.126 13 H 0.061 0.939 14 C 0.069 3.931 15 N -0.335 5.335 16 C -0.399 4.399 17 H 0.075 0.925 18 C -0.241 4.241 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.214 1.214 24 C 0.012 3.988 25 C -0.136 4.136 26 C 0.058 3.942 27 H 0.085 0.915 28 C -0.144 4.144 29 C -0.061 4.061 30 C -0.174 4.174 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.214 0.786 35 H 0.167 0.833 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.021 0.979 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.151 0.849 49 H 0.108 0.892 50 H 0.117 0.883 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.822 0.020 4.627 30.179 hybrid contribution 1.307 -1.071 -0.653 1.812 sum -28.515 -1.051 3.974 28.810 Atomic orbital electron populations 1.20941 0.86992 1.04976 1.04077 1.21410 0.99674 0.92621 0.97515 1.23470 0.88684 0.99656 0.94919 1.67426 1.09540 1.28436 1.12152 1.20895 0.92869 0.90931 1.03233 1.18512 0.87011 0.82290 0.77751 1.90799 1.65828 1.38002 1.49614 1.48188 1.06438 1.15575 1.61299 1.23015 1.00136 0.86885 0.94359 1.21915 0.94794 1.02486 0.97001 1.21486 0.95751 0.95922 1.01587 1.22057 0.97174 0.98012 0.95343 0.93940 1.20512 0.87966 0.86596 0.98026 1.44363 1.42778 1.27802 1.18586 1.19474 1.08116 0.90700 1.21580 0.92466 1.25846 0.98520 0.96527 1.03228 1.70178 1.40215 1.06988 1.40221 0.85212 0.77981 0.78357 0.78934 1.19550 1.21217 1.21395 1.21219 0.93574 0.96855 0.87184 1.22225 0.94406 0.95068 1.01901 1.21200 0.78443 0.97864 0.96708 0.91480 1.22013 0.95649 0.97946 0.98770 1.20549 0.92063 0.97906 0.95595 1.20978 1.00970 0.91349 1.04100 0.89208 0.89162 0.89622 0.78628 0.83294 0.90902 0.93122 0.87840 0.91992 0.91371 0.92764 0.97896 0.93883 0.93218 0.96748 0.93930 0.90147 0.84855 0.89189 0.88256 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 9.65 71.24 0.69 0.24 16 2 C -0.11 -1.32 5.91 -19.70 -0.12 -1.44 16 3 C 0.09 1.31 10.86 84.83 0.92 2.23 16 4 N -0.46 -10.22 6.39 -184.90 -1.18 -11.40 16 5 C 0.06 1.54 6.45 41.90 0.27 1.81 16 6 C 0.56 19.49 7.54 86.88 0.66 20.15 16 7 O -0.56 -23.02 12.10 -3.79 -0.05 -23.07 16 8 N -0.59 -19.81 2.96 -797.52 -2.36 -22.17 16 9 C 0.08 2.02 5.99 86.32 0.52 2.54 16 10 C -0.12 -3.17 6.07 30.69 0.19 -2.98 16 11 C -0.11 -3.55 5.24 30.58 0.16 -3.39 16 12 C -0.10 -4.35 2.21 -10.60 -0.02 -4.37 16 13 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 14 C 0.20 9.99 4.60 86.29 0.40 10.39 16 15 N -0.61 -33.83 2.99 -698.89 -2.09 -35.91 16 16 C -0.27 -15.95 9.54 84.03 0.80 -15.15 16 17 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 18 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 19 N -0.93 -56.72 11.32 21.65 0.25 -56.48 16 20 Si 0.97 46.88 29.58 68.60 2.03 48.91 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 C 0.14 6.71 6.50 86.42 0.56 7.27 16 25 C -0.10 -4.25 3.80 30.68 0.12 -4.13 16 26 C 0.16 6.34 2.67 45.16 0.12 6.46 16 27 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 28 C -0.12 -2.89 9.33 22.61 0.21 -2.68 16 29 C -0.05 -0.84 5.91 -19.69 -0.12 -0.96 16 30 C -0.12 -1.08 9.67 71.24 0.69 -0.39 16 31 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 0.11 8.09 -2.39 -0.02 0.09 16 33 H 0.09 0.19 6.06 -2.39 -0.01 0.17 16 34 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.15 3.52 4.02 -51.38 -0.21 3.32 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 3.09 6.23 -2.39 -0.01 3.07 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.05 2.41 7.93 -2.38 -0.02 2.39 16 45 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.04 2.04 7.32 -2.38 -0.02 2.03 16 47 H 0.08 3.49 6.26 -2.39 -0.01 3.48 16 48 H 0.13 3.35 7.80 -2.91 -0.02 3.33 16 49 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 0.45 6.07 -2.39 -0.01 0.44 16 51 H 0.07 0.72 8.10 -2.38 -0.02 0.70 16 Total: -1.00 -75.46 385.22 3.78 -71.68 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.73 Total: 15.09 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.46 Total: 13.35 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -5.39 Total: -125.97 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.46 3.78 -71.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021638368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.528 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds